Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016298

Physical Location & Seq

Genomic Coordinates Reverse (-)

36377132 .. 36380223

Gene Structure 3092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43661.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGAGATGCTTTAAACAAAATAGCCAACTTCTCGGGTGGAACACCCAAGAACATAAGACTCACAAAGAACTTGTTAAAGTCATTGTGGAATTTGTCTGCACGAAAGTAGTACCTGATGCAATTGAGTCCACAGGAGATTTTGAAGTGTTTGAAGTCACCAGACGTGCAATGTATGAGGTTATGAAGGCGTTTACAGATGATGAGGTCACTGCCATTGGTGTCTACAGCATGGGAGGCGTTGGAAAGACAACCCTGGTAAAACTTATCGCTGCACATGGAAAAAATAGTGGGATTTTTGATCATGTGATTATCAGTGTCGCATCCCAAAACCCTGAGTTGGAAAATATTCAAGGCACATTGGCAGAGCAGCTGGGCTTCAAATTACATGAGAAGAGAGAAATTGGACGAGCAGCGAGATTGAGTAAGGAGATAAAAGAGAAGAATAAGATCATTATAATCCTGGACGACATTTGGGAGAGAATTGATTTATCAAGAATAGGAATACCGAGCTACAAGGAACTTCAAAAGTGCAATTCAAAAGTCCTACTGACCACAAGGATAATGAATGTTTGTCATGCCATGGAGTGCCAAAGAAAGATCACCCTCAATGGTTCTGTCAGCACAAGATTCTTGGGCCTTGTTTATGAGAAAAGCAAGAACGTCTTTCGAATTGCCCTCTTTCGAGGGTGTGGCAAGGAAGGTAGCTGGAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

240

Amino Acids

27.12

Weight (kDa)

9.07

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	60 - 199	1.1e-24	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43661
rosa_chinensis	RchiOBHm_Chr1g0353701 RchiOBHm_Chr3g0468981 RchiOBHm_Chr5g0076011 RchiOBHm_Chr5g0079501
rosa_laevigata	RLG00000002616 RLG00000002880
rosa_multiflora	Rmu_co7975680.1_g000001 Rmu_co8055250.1_g000001 Rmu_sc0001226.1_g000015 Rmu_sc0009227.1_g000012 Rmu_sc0029401.1_g000001
rosa_rugosa	Rorug05G0363200
rosa_wichuraiana	Rw7G022040 Rw7G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AccI	GTMKAC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	92
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	6 cut(s)	146, 155, 353, 382, 527, 540
AjiI	CACGTC	1 cut(s)	167
AjnI	CCWGG	2 cut(s)	255, 462
AluBI	AGCT	3 cut(s)	373, 513, 708
AluI	AGCT	3 cut(s)	373, 513, 708
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	3 cut(s)	272, 370, 413
ApoI	RAATTY	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	637
AsuHPI	GGTGA	2 cut(s)	151, 595
AsuII	TTCGAA	1 cut(s)	670
AvaI	CYCGRG	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	259, 382, 425
BciT130I	CCWGG	2 cut(s)	257, 464
BclI	TGATCA	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	3 cut(s)	273, 371, 414
BlsI	GCNGC	3 cut(s)	274, 372, 415
Bme1390I	CCNGG	2 cut(s)	257, 464
BmeT110I	CYCGRG	1 cut(s)	35
BmgBI	CACGTC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	637
BmrFI	CCNGG	2 cut(s)	257, 464
BmsI	GCATC	2 cut(s)	109, 332
Bpu14I	TTCGAA	1 cut(s)	670
BsaJI	CCNNGG	2 cut(s)	255, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	257, 464
BseDI	CCNNGG	2 cut(s)	255, 582
BseGI	GGATG	1 cut(s)	323
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	327
BseXI	GCAGC	3 cut(s)	259, 382, 425
BseYI	CCCAGC	1 cut(s)	373
BsgI	GTGCAG	2 cut(s)	85, 258
BshFI	GGCC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	340
BsnI	GGCC	1 cut(s)	639
BsoBI	CYCGRG	1 cut(s)	35
Bsp119I	TTCGAA	1 cut(s)	670
Bsp143I	GATC	3 cut(s)	301, 450, 600
Bsp19I	CCATGG	1 cut(s)	582
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	1 cut(s)	328
BspT104I	TTCGAA	1 cut(s)	670
BsrDI	GCAATG	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	255, 582
BssMI	GATC	3 cut(s)	301, 450, 600
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	257, 464
Bst6I	CTCTTC	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	670
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	323
BstKTI	GATC	3 cut(s)	304, 453, 603
BstMBI	GATC	3 cut(s)	301, 450, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	257, 464
BstSCI	CCNGG	2 cut(s)	255, 462
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	259, 382, 425
BsuRI	GGCC	1 cut(s)	639
BtgI	CCRYGG	1 cut(s)	582
BtrI	CACGTC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	323
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	210, 322
Cfr13I	GGNCC	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	6 cut(s)	232, 278, 305, 389, 578, 583
CviJI	RGCY	6 cut(s)	27, 373, 378, 513, 639, 708
CviKI_1	RGCY	6 cut(s)	27, 373, 378, 513, 639, 708
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	3 cut(s)	303, 452, 602
DpnII	GATC	3 cut(s)	301, 450, 600
DraI	TTTAAA	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	255, 462
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	6 cut(s)	235, 281, 308, 392, 581, 586
FalI	AAGNNNNNCTT	2 cut(s)	650, 682
FatI	CATG	6 cut(s)	231, 277, 304, 388, 577, 582
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	273, 371, 414
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	3 cut(s)	273, 371, 414
GluI	GCNGC	3 cut(s)	273, 371, 414
GsaI	CCCAGC	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	639
Hin1II	CATG	6 cut(s)	235, 281, 308, 392, 581, 586
HinfI	GANTC	3 cut(s)	61, 128, 630
HphI	GGTGA	2 cut(s)	151, 595
Hpy166II	GTNNAC	3 cut(s)	132, 195, 226
Hpy188III	TCNNGA	1 cut(s)	495
Hpy8I	GTNNAC	3 cut(s)	132, 195, 226
HpyAV	CCTTC	2 cut(s)	181, 695
HpyCH4IV	ACGT	2 cut(s)	166, 663
HpyCH4V	TGCA	5 cut(s)	102, 122, 170, 275, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	2 cut(s)	166, 663
Hsp92II	CATG	6 cut(s)	235, 281, 308, 392, 581, 586
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	301, 450, 600
Lsp1109I	GCAGC	3 cut(s)	259, 382, 425
LweI	GCATC	2 cut(s)	109, 332
MaeII	ACGT	2 cut(s)	166, 663
MaeIII	GTNAC	2 cut(s)	157, 208
MalI	GATC	3 cut(s)	303, 452, 602
MboI	GATC	3 cut(s)	301, 450, 600
MboII	GAAGA	2 cut(s)	406, 454
MfeI	CAATTG	1 cut(s)	123
MluCI	AATT	7 cut(s)	92, 123, 383, 402, 483, 535, 672
MlyI	GAGTC	2 cut(s)	55, 137
MmeI	TCCRAC	2 cut(s)	223, 321
MnlI	CCTC	6 cut(s)	172, 199, 230, 617, 680, 689
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	15, 78
MspA1I	CMGCKG	1 cut(s)	373
MspR9I	CCNGG	2 cut(s)	257, 464
MunI	CAATTG	1 cut(s)	123
MvaI	CCWGG	2 cut(s)	257, 464
MwoI	GCNNNNNNNGC	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	3 cut(s)	301, 450, 600
NlaIII	CATG	6 cut(s)	235, 281, 308, 392, 581, 586
NmuCI	GTSAC	2 cut(s)	157, 208
NspV	TTCGAA	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	630
PfoI	TCCNGGA	1 cut(s)	462
PkrI	GCNGC	3 cut(s)	274, 372, 415
PleI	GAGTC	2 cut(s)	55, 136
PpsI	GAGTC	2 cut(s)	55, 136
PsiI	TTATAA	1 cut(s)	458
Psp6I	CCWGG	2 cut(s)	255, 462
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	2 cut(s)	255, 462
PspPI	GGNCC	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	15, 78
SatI	GCNGC	3 cut(s)	273, 371, 414
Sau3AI	GATC	3 cut(s)	301, 450, 600
Sau96I	GGNCC	1 cut(s)	637
SchI	GAGTC	2 cut(s)	55, 137
ScrFI	CCNGG	2 cut(s)	257, 464
SetI	ASST	9 cut(s)	118, 169, 183, 210, 375, 515, 666, 706, 710
SfaNI	GCATC	2 cut(s)	109, 332
SfcI	CTRYAG	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	670
Sse9I	AATT	7 cut(s)	92, 123, 383, 402, 483, 535, 672
SspI	AATATT	1 cut(s)	349
StyD4I	CCNGG	2 cut(s)	255, 462
StyI	CCWWGG	1 cut(s)	582
TaiI	ACGT	2 cut(s)	169, 666
TaqI	TCGA	2 cut(s)	670, 685
TasI	AATT	7 cut(s)	92, 123, 383, 402, 483, 535, 672
TfiI	GAWTC	1 cut(s)	630
Tru1I	TTAA	2 cut(s)	15, 78
Tru9I	TTAA	2 cut(s)	15, 78
TscAI	CASTG	2 cut(s)	217, 322
TseFI	GTSAC	2 cut(s)	157, 208
TseI	GCWGC	3 cut(s)	272, 370, 413
Tsp45I	GTSAC	2 cut(s)	157, 208
TspDTI	ATGAA	2 cut(s)	200, 581
TspRI	CASTG	2 cut(s)	217, 322
XapI	RAATTY	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.