Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7975680.1

Orthogroup ID

OG0016298

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 511

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7975680.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 511 bp

taggtctgacagagaactcgtccaacgcattgtggaacttgtgcgccgtgatgtaaggcctatttcaataatgtcgagcagcaattttgaagcatttgaatcaacaagaaaagccatgaatgagctgatggaggcattagaagatgataaggtcgctgccattggggtctatggaatgggaggggttgggaagacaaccatggtgaaacatgtcggtgcacaagcccaaaaaatggggctttttgatcgtgtgattatggctgttgtatcccaaaccccagatccaagaaatattcaaggcgcacttgcggatctgctgggcttgaaattagaggaggagtccgaaagtggacgagccgatagattgcagaaggagatacttggaagaaataagatccttataatcttagacgacatttggaatacacttgacttgtcaagcattggaattcccagctacaacgagcttcaaatctgcaattccaaactgctattcaccacaaggagattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

170

Amino Acids

18.99

Weight (kDa)

5.96

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43661
rosa_chinensis	RchiOBHm_Chr1g0353701 RchiOBHm_Chr3g0468981 RchiOBHm_Chr5g0076011 RchiOBHm_Chr5g0079501
rosa_laevigata	RLG00000002616 RLG00000002880
rosa_multiflora	Rmu_co7975680.1_g000001 Rmu_co8055250.1_g000001 Rmu_sc0001226.1_g000015 Rmu_sc0009227.1_g000012 Rmu_sc0029401.1_g000001
rosa_rugosa	Rorug05G0363200
rosa_wichuraiana	Rw7G022040 Rw7G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AccB7I	CCANNNNNTGG	1 cut(s)	233
AciI	CCGC	1 cut(s)	309
AclWI	GGATC	3 cut(s)	276, 319, 389
AcsI	RAATTY	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	6 cut(s)	67, 90, 99, 297, 326, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AluBI	AGCT	3 cut(s)	125, 457, 467
AluI	AGCT	3 cut(s)	125, 457, 467
Alw21I	GWGCWC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	276, 319, 389
AoxI	GGCC	1 cut(s)	57
ApaLI	GTGCAC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	79, 156
ApoI	RAATTY	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	46, 303
AsuHPI	GGTGA	2 cut(s)	215, 488
BaeGI	GKGCMC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	91, 143
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	278
BisI	GCNGC	2 cut(s)	80, 157
BlsI	GCNGC	2 cut(s)	81, 158
BpiI	GAAGAC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseRI	GAGGAG	2 cut(s)	348, 351
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	91, 143
BseYI	CCCAGC	2 cut(s)	317, 453
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	233
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	4 cut(s)	245, 281, 311, 394
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	59
BspPI	GGATC	3 cut(s)	276, 319, 389
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	4 cut(s)	245, 281, 311, 394
BssT1I	CCWWGG	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	407
BstDSI	CCRYGG	1 cut(s)	199
BstHHI	GCGC	2 cut(s)	46, 303
BstKTI	GATC	4 cut(s)	248, 284, 314, 397
BstMBI	GATC	4 cut(s)	245, 281, 311, 394
BstNSI	RCATGY	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	91, 143
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	3 cut(s)	281, 311, 394
BstYI	RGATCY	3 cut(s)	281, 311, 394
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	199
CfoI	GCGC	2 cut(s)	46, 303
CviAII	CATG	3 cut(s)	116, 200, 210
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	4 cut(s)	247, 283, 313, 396
DpnII	GATC	4 cut(s)	245, 281, 311, 394
Eco130I	CCWWGG	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	3 cut(s)	119, 203, 213
FaiI	YATR	6 cut(s)	117, 172, 201, 211, 258, 402
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FatI	CATG	3 cut(s)	115, 199, 209
Fnu4HI	GCNGC	2 cut(s)	80, 157
Fsp4HI	GCNGC	2 cut(s)	80, 157
GlaI	GCGC	2 cut(s)	45, 302
GluI	GCNGC	2 cut(s)	80, 157
GsaI	CCCAGC	2 cut(s)	321, 457
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	46, 303
Hin1II	CATG	3 cut(s)	119, 203, 213
Hin6I	GCGC	2 cut(s)	44, 301
HinP1I	GCGC	2 cut(s)	44, 301
HinfI	GANTC	2 cut(s)	99, 339
HphI	GGTGA	2 cut(s)	215, 488
Hpy166II	GTNNAC	2 cut(s)	219, 351
Hpy188I	TCNGA	2 cut(s)	8, 344
Hpy8I	GTNNAC	2 cut(s)	219, 351
HpyAV	CCTTC	1 cut(s)	365
HpyCH4V	TGCA	3 cut(s)	219, 368, 478
HpyF3I	CTNAG	1 cut(s)	407
Hsp92II	CATG	3 cut(s)	119, 203, 213
HspAI	GCGC	2 cut(s)	44, 301
Kzo9I	GATC	4 cut(s)	245, 281, 311, 394
LpnPI	CCDG	3 cut(s)	292, 303, 467
Lsp1109I	GCAGC	2 cut(s)	91, 143
MalI	GATC	4 cut(s)	247, 283, 313, 396
MboI	GATC	4 cut(s)	245, 281, 311, 394
MboII	GAAGA	3 cut(s)	153, 203, 397
MflI	RGATCY	3 cut(s)	281, 311, 394
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	4 cut(s)	83, 327, 448, 479
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	4 cut(s)	125, 174, 326, 329
MslI	CAYNNNNRTG	1 cut(s)	214
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	4 cut(s)	245, 281, 311, 394
NlaIII	CATG	3 cut(s)	119, 203, 213
NspI	RCATGY	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	59
PciI	ACATGT	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	81, 158
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PscI	ACATGT	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	402
PspFI	CCCAGC	2 cut(s)	317, 453
PsuI	RGATCY	3 cut(s)	281, 311, 394
RseI	CAYNNNNRTG	1 cut(s)	214
SatI	GCNGC	2 cut(s)	80, 157
Sau3AI	GATC	4 cut(s)	245, 281, 311, 394
SchI	GAGTC	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	5 cut(s)	6, 127, 154, 459, 469
SmiMI	CAYNNNNRTG	1 cut(s)	214
Sse9I	AATT	4 cut(s)	83, 327, 448, 479
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	309
SspI	AATATT	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	199
TaqI	TCGA	1 cut(s)	75
TasI	AATT	4 cut(s)	83, 327, 448, 479
TfiI	GAWTC	1 cut(s)	99
TseI	GCWGC	2 cut(s)	79, 156
TspDTI	ATGAA	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.