RchiOBHm_Chr3g0468981

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016298
Physical Location & Seq
Reverse (-)
14804060 .. 14805020
961 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43484

Sequence Viewer

Length: 918 bp
ATGGATAAGGTTATGAAGGCGCTACAAGATGATGAGGTCACTGTCGTAGGAGTCTATGGAATGGGAGGTATCGGAAAGACGACCATGGTGGAACATGTCGGTGCACAAGCCTGCAATACTGGGCTTTTTGATCATGTTATTATGGCCGTTGTATCCCAAAGCCCTGACTTCAGAAAAATTCAAGGCACATTGGCAGATCTGTTGGAATTGAAATTAGAGGGGGAGACAGAAGTTGGAAGAGCTCGTATATTACAGAAGGAGATAATTAGTAGAAATAAGATCCTTATAATCTTGGACGACATTTGGGAGATGATAGACTTGTCAAGAATAGGAATTCCTAGCTATGGCCAGCTCCAAAGACGCAATTCCAAAGTCCTTCTCACCACAAGGAGATTTAATGTCTGTCATTCCATGGAGAGCCAGTCAAGCATCCCTCTCAATATCTTATCAGAAGAAGATTCTTGGAAATTGTTTGTGAAGAAAGCAAGAAAGTCTTTTGAAAATTCGACTAATTTCTATGATATTGCAAGGAAGGTAGCAAGAGAATGTGCTGGTCTACCAGTTGCGTTGATAGCAGTTGCGAGGGCACTTGGAGATAAAGATTTGGATGAATGGAAGGAAGCAGCTCGACGACTGAAGGCTTCTCAACCTGTCCACCCTGAAGATGGGAGAGTTGTGTTGAAATATCATGCTTCTTACTTTGCTGCCTATTCCCAGAGGATTATGATATCCCAATTGAGGACTTGCTGGGGTATGGGTTCGGGAAAGGATTATTTCAACATTGCAACACATTGCAAGAAGCCAGAGCCACTGCTTATTCAGAGGTCAAGTACCTTAAAGCTTCTAGCTTGCTTTTGGCGGGTAAATATGACGAACAGGTTAGGATGCATGATGTCATTCGGGATATGGCCATACTAA

Protein Analysis

305

Amino Acids

34.49

Weight (kDa)

9.18

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 163 1.3e-31 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AccI GTMKAC 1 cut(s) 556
AciI CCGC 1 cut(s) 859
AclWI GGATC 1 cut(s) 274
AcoI YGGCCR 3 cut(s) 144, 346, 908
AcsI RAATTY 3 cut(s) 177, 333, 502
AcuI CTGAAG 3 cut(s) 154, 656, 681
AfaI GTAC 1 cut(s) 832
AfiI CCNNNNNNNGG 3 cut(s) 344, 665, 738
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 5 cut(s) 182, 211, 500, 682, 778
AluBI AGCT 6 cut(s) 242, 342, 352, 626, 841, 848
AluI AGCT 6 cut(s) 242, 342, 352, 626, 841, 848
Alw21I GWGCWC 2 cut(s) 106, 244
Alw26I GTCTC 1 cut(s) 218
Alw44I GTGCAC 1 cut(s) 102
AlwI GGATC 1 cut(s) 274
AoxI GGCC 3 cut(s) 144, 346, 908
ApaLI GTGCAC 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 623, 704
ApoI RAATTY 3 cut(s) 177, 333, 502
AspLEI GCGC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 373
BaeGI GKGCMC 2 cut(s) 106, 589
BalI TGGCCA 2 cut(s) 348, 910
BanII GRGCYC 1 cut(s) 244
Bbv12I GWGCWC 2 cut(s) 106, 244
BbvI GCAGC 2 cut(s) 635, 691
BccI CCATC 1 cut(s) 659
BceAI ACGGC 1 cut(s) 131
BciVI GTATCC 1 cut(s) 163
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 2 cut(s) 339, 845
BfoI RGCGCY 1 cut(s) 23
BfuI GTATCC 1 cut(s) 163
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 624, 705
BlsI GCNGC 2 cut(s) 625, 706
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 438, 875
BmuI ACTGGG 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 84, 411
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 665, 738
Bse1I ACTGG 3 cut(s) 124, 421, 560
Bse3DI GCAATG 2 cut(s) 780, 790
BseDI CCNNGG 2 cut(s) 84, 411
BseGI GGATG 3 cut(s) 429, 613, 890
BseLI CCNNNNNNNGG 3 cut(s) 344, 665, 738
BseMI GCAATG 2 cut(s) 780, 790
BseNI ACTGG 3 cut(s) 124, 421, 560
BseSI GKGCMC 2 cut(s) 106, 589
BseXI GCAGC 2 cut(s) 635, 691
BseYI CCCAGC 1 cut(s) 747
BshFI GGCC 3 cut(s) 146, 348, 910
BsiHKAI GWGCWC 2 cut(s) 106, 244
BslI CCNNNNNNNGG 3 cut(s) 344, 665, 738
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 3 cut(s) 146, 348, 910
Bsp1286I GDGCHC 3 cut(s) 106, 244, 589
Bsp143I GATC 3 cut(s) 130, 196, 279
Bsp19I CCATGG 2 cut(s) 84, 411
BspACI CCGC 1 cut(s) 859
BspANI GGCC 3 cut(s) 146, 348, 910
BspPI GGATC 1 cut(s) 274
BspQI GCTCTTC 1 cut(s) 232
BsrDI GCAATG 2 cut(s) 780, 790
BsrI ACTGG 3 cut(s) 124, 421, 560
BssECI CCNNGG 2 cut(s) 84, 411
BssMI GATC 3 cut(s) 130, 196, 279
BssT1I CCWWGG 2 cut(s) 84, 411
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 232
BstC8I GCNNGC 3 cut(s) 112, 350, 850
BstDSI CCRYGG 2 cut(s) 84, 411
BstF5I GGATG 3 cut(s) 429, 613, 890
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 3 cut(s) 133, 199, 282
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 130, 196, 279
BstMWI GCNNNNNNNGC 2 cut(s) 426, 572
BstNSI RCATGY 1 cut(s) 98
BstSLI GKGCMC 2 cut(s) 106, 589
BstV1I GCAGC 2 cut(s) 635, 691
BstX2I RGATCY 2 cut(s) 196, 279
BstYI RGATCY 2 cut(s) 196, 279
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 3 cut(s) 146, 348, 910
BtgI CCRYGG 2 cut(s) 84, 411
BtsCI GGATG 3 cut(s) 429, 613, 890
BtsI GCAGTG 1 cut(s) 809
BtsIMutI CAGTG 2 cut(s) 39, 809
Cac8I GCNNGC 3 cut(s) 112, 350, 850
CfoI GCGC 1 cut(s) 22
CseI GACGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 831
CviAII CATG 6 cut(s) 85, 95, 134, 412, 689, 889
CviQI GTAC 1 cut(s) 831
DpnI GATC 3 cut(s) 132, 198, 281
DpnII GATC 3 cut(s) 130, 196, 279
EaeI YGGCCR 3 cut(s) 144, 346, 908
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 242
Eco130I CCWWGG 2 cut(s) 84, 411
Eco24I GRGCYC 1 cut(s) 244
Eco32I GATATC 1 cut(s) 729
Eco53kI GAGCTC 1 cut(s) 242
Eco57I CTGAAG 3 cut(s) 154, 656, 681
EcoICRI GAGCTC 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 333
EcoRV GATATC 1 cut(s) 729
EcoT14I CCWWGG 2 cut(s) 84, 411
EcoT22I ATGCAT 1 cut(s) 890
EcoT38I GRGCYC 1 cut(s) 244
ErhI CCWWGG 2 cut(s) 84, 411
FaeI CATG 6 cut(s) 88, 98, 137, 415, 692, 892
FalI AAGNNNNNCTT 2 cut(s) 478, 510
FatI CATG 6 cut(s) 84, 94, 133, 411, 688, 888
FauI CCCGC 1 cut(s) 852
FbaI TGATCA 1 cut(s) 130
FblI GTMKAC 1 cut(s) 556
Fnu4HI GCNGC 2 cut(s) 624, 705
FokI GGATG 3 cut(s) 416, 620, 897
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 624, 705
FspBI CTAG 2 cut(s) 339, 845
GlaI GCGC 1 cut(s) 21
GluI GCNGC 2 cut(s) 624, 705
GsaI CCCAGC 1 cut(s) 751
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 3 cut(s) 146, 348, 910
HgaI GACGC 1 cut(s) 369
HhaI GCGC 1 cut(s) 22
Hin1II CATG 6 cut(s) 88, 98, 137, 415, 692, 892
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 2 cut(s) 51, 458
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 3 cut(s) 104, 557, 655
Hpy188I TCNGA 4 cut(s) 74, 173, 451, 822
Hpy188III TCNNGA 3 cut(s) 324, 762, 901
Hpy8I GTNNAC 3 cut(s) 104, 557, 655
Hpy99I CGWCG 1 cut(s) 633
HpyAV CCTTC 6 cut(s) 10, 250, 386, 526, 610, 631
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 6 cut(s) 104, 114, 527, 785, 795, 888
HpyF10VI GCNNNNNNNGC 2 cut(s) 426, 572
Hsp92II CATG 6 cut(s) 88, 98, 137, 415, 692, 892
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 130, 196, 279
LguI GCTCTTC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 357
Lsp1109I GCAGC 2 cut(s) 635, 691
LweI GCATC 2 cut(s) 438, 875
MaeI CTAG 2 cut(s) 339, 845
MaeIII GTNAC 1 cut(s) 37
MalI GATC 3 cut(s) 132, 198, 281
MboI GATC 3 cut(s) 130, 196, 279
MboII GAAGA 5 cut(s) 249, 464, 467, 490, 674
MfeI CAATTG 1 cut(s) 734
MflI RGATCY 2 cut(s) 196, 279
MhlI GDGCHC 3 cut(s) 106, 244, 589
MlsI TGGCCA 2 cut(s) 348, 910
MluNI TGGCCA 2 cut(s) 348, 910
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 2 cut(s) 183, 214
MnlI CCTC 8 cut(s) 28, 59, 211, 444, 576, 711, 732, 816
Mox20I TGGCCA 2 cut(s) 348, 910
Mph1103I ATGCAT 1 cut(s) 890
MscI TGGCCA 2 cut(s) 348, 910
MseI TTAA 2 cut(s) 396, 836
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 2 cut(s) 348, 910
MunI CAATTG 1 cut(s) 734
MwoI GCNNNNNNNGC 2 cut(s) 426, 572
NcoI CCATGG 2 cut(s) 84, 411
NdeII GATC 3 cut(s) 130, 196, 279
NlaIII CATG 6 cut(s) 88, 98, 137, 415, 692, 892
NmuCI GTSAC 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 890
NspI RCATGY 1 cut(s) 98
PciI ACATGT 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 458
PkrI GCNGC 2 cut(s) 625, 706
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PscI ACATGT 1 cut(s) 94
PsiI TTATAA 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 747
PsuI RGATCY 2 cut(s) 196, 279
RsaI GTAC 1 cut(s) 832
RsaNI GTAC 1 cut(s) 831
RseI CAYNNNNRTG 1 cut(s) 99
SacI GAGCTC 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 2 cut(s) 396, 836
SatI GCNGC 2 cut(s) 624, 705
Sau3AI GATC 3 cut(s) 130, 196, 279
SchI GAGTC 1 cut(s) 60
SduI GDGCHC 3 cut(s) 106, 244, 589
SfaNI GCATC 2 cut(s) 438, 875
SmiMI CAYNNNNRTG 1 cut(s) 99
SsiI CCGC 1 cut(s) 859
SspMI CTAG 2 cut(s) 339, 845
SstI GAGCTC 1 cut(s) 244
StyI CCWWGG 2 cut(s) 84, 411
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 506, 628
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 2 cut(s) 396, 836
Tru9I TTAA 2 cut(s) 396, 836
TscAI CASTG 2 cut(s) 46, 816
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 623, 704
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 29, 624
TspRI CASTG 2 cut(s) 46, 816
VneI GTGCAC 1 cut(s) 102
XapI RAATTY 3 cut(s) 177, 333, 502
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 556
XspI CTAG 2 cut(s) 339, 845
Zsp2I ATGCAT 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.