Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016298

Physical Location & Seq

Genomic Coordinates Forward (+)

46878366 .. 46879031

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57932

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGAGATTTTGAAGCATTTGAAGCAACAAGGGAAGCCATGGACAAGGTTACAAAAGCGCTAAAAGATGATGAGGTCTCAGCTGTCGGGGTCTATGGAATGGGAGGCGTTGGCAAGACAACCATGGTAAAACATGTTGGTAATCAAGCCCGCAAAAATGGGATTTTTCATCATGTGATTATGGCTGTCATGTCCCAAAGCCCTGACTTGATGGAAATTCAGCACACATTGGCAGAGCTGCTGGGGATCGATTTACAAGAGAAGTCACAAAGTGGAAGAGCCTCTAGATTGAACAAAGAGATAATGAGAAAAAATAAAATCCTTATAATCTTGGATGACATTTGGGAGAGAATAGAATTGTCAAGCATAGGGATTCCCAGCTACAAGGAACTTCAAAAATGCAATTCCAAAGTCCTACTCACAACAAGGATACAGAATGTTTGTCATGCCATGGAGTGCCAAGAAATGATCACCCTTAATGTCCTCTCGGAAGAGGATTCTTGGACCTTATTTATGAGAAATGCAAGAAGGTCTTTCGAAATGACCATTTTCAGGGATATAGCGAGGAAGGTAGCTAGAGAATGTTGTGGTCTACCAATTGCATTGATAGCAGTTGCAAGGGCACTTGGAGATAAAGACCTGCGAGAATGGAAAAAGGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

221

Amino Acids

24.94

Weight (kDa)

8.25

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	12 - 175	5.8e-34	NB-ARC domain
AAA_22	PF13401	31 - 114	5.2e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43661
rosa_chinensis	RchiOBHm_Chr1g0353701 RchiOBHm_Chr3g0468981 RchiOBHm_Chr5g0076011 RchiOBHm_Chr5g0079501
rosa_laevigata	RLG00000002616 RLG00000002880
rosa_multiflora	Rmu_co7975680.1_g000001 Rmu_co8055250.1_g000001 Rmu_sc0001226.1_g000015 Rmu_sc0009227.1_g000012 Rmu_sc0029401.1_g000001
rosa_rugosa	Rorug05G0363200
rosa_wichuraiana	Rw7G022040 Rw7G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	648
AccI	GTMKAC	1 cut(s)	592
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	272
AfeI	AGCGCT	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	552
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	14, 23, 292, 395
AluBI	AGCT	5 cut(s)	83, 238, 381, 575, 662
AluI	AGCT	5 cut(s)	83, 238, 381, 575, 662
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	254
Aor51HI	AGCGCT	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	238, 659
ApoI	RAATTY	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	504
AsuHPI	GGTGA	1 cut(s)	463
AsuII	TTCGAA	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	504
BaeGI	GKGCMC	1 cut(s)	625
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	1 cut(s)	205
BciVI	GTATCC	1 cut(s)	423
BclI	TGATCA	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	285, 576
BfoI	RGCGCY	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	423
BisI	GCNGC	2 cut(s)	239, 660
BlsI	GCNGC	2 cut(s)	240, 661
Bme18I	GGWCC	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	537
Bsa29I	ATCGAT	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	39, 123, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	552
BseCI	ATCGAT	1 cut(s)	249
BseDI	CCNNGG	3 cut(s)	39, 123, 450
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	552
BseMII	CTCAG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	625
BseXI	GCAGC	1 cut(s)	225
BseYI	CCCAGC	2 cut(s)	241, 377
BshVI	ATCGAT	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	552
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	82
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp143I	GATC	2 cut(s)	246, 468
Bsp19I	CCATGG	3 cut(s)	39, 123, 450
BspACI	CCGC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	92
BspDI	ATCGAT	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	648
BspPI	GGATC	1 cut(s)	254
BspQI	GCTCTTC	1 cut(s)	271
BspT104I	TTCGAA	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	39, 123, 450
BssMI	GATC	2 cut(s)	246, 468
BssT1I	CCWWGG	3 cut(s)	39, 123, 450
Bst6I	CTCTTC	2 cut(s)	271, 486
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	79
BstDSI	CCRYGG	3 cut(s)	39, 123, 450
BstF5I	GGATG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	249, 471
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	246, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 608
BstNSI	RCATGY	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	625
BstV1I	GCAGC	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	423
BsuTUI	ATCGAT	1 cut(s)	249
BtgI	CCRYGG	3 cut(s)	39, 123, 450
BtsCI	GGATG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	648
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	504
ClaI	ATCGAT	1 cut(s)	249
CviAII	CATG	7 cut(s)	40, 124, 134, 173, 190, 446, 451
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	2 cut(s)	248, 470
DpnII	GATC	2 cut(s)	246, 468
DraIII	CACNNNGTG	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	271, 486
EarI	CTCTTC	2 cut(s)	271, 486
Eco130I	CCWWGG	3 cut(s)	39, 123, 450
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	504
Eco47III	AGCGCT	1 cut(s)	60
EcoT14I	CCWWGG	3 cut(s)	39, 123, 450
ErhI	CCWWGG	3 cut(s)	39, 123, 450
FaeI	CATG	7 cut(s)	43, 127, 137, 176, 193, 449, 454
FalI	AAGNNNNNCTT	2 cut(s)	517, 549
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	7 cut(s)	39, 123, 133, 172, 189, 445, 450
FauI	CCCGC	1 cut(s)	158
FbaI	TGATCA	1 cut(s)	468
FblI	GTMKAC	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	239, 660
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	239, 660
FspBI	CTAG	2 cut(s)	285, 576
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	2 cut(s)	239, 660
GsaI	CCCAGC	2 cut(s)	245, 381
HaeII	RGCGCY	1 cut(s)	62
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	7 cut(s)	43, 127, 137, 176, 193, 449, 454
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	2 cut(s)	373, 497
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	1 cut(s)	593
HpyAV	CCTTC	2 cut(s)	522, 562
HpyCH4V	TGCA	4 cut(s)	402, 524, 602, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 608
HpyF3I	CTNAG	1 cut(s)	79
Hsp92II	CATG	7 cut(s)	43, 127, 137, 176, 193, 449, 454
HspAI	GCGC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	2 cut(s)	246, 468
LguI	GCTCTTC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	216, 227, 391, 538, 653
Lsp1109I	GCAGC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	285, 576
MaeIII	GTNAC	2 cut(s)	49, 264
MalI	GATC	2 cut(s)	248, 470
MboI	GATC	2 cut(s)	246, 468
MboII	GAAGA	2 cut(s)	288, 503
MfeI	CAATTG	1 cut(s)	597
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	4 cut(s)	216, 356, 403, 597
MnlI	CCTC	6 cut(s)	67, 98, 292, 487, 494, 558
MseI	TTAA	2 cut(s)	477, 664
MspA1I	CMGCKG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	23, 608
NcoI	CCATGG	3 cut(s)	39, 123, 450
NdeII	GATC	2 cut(s)	246, 468
NlaIII	CATG	7 cut(s)	43, 127, 137, 176, 193, 449, 454
NmuCI	GTSAC	1 cut(s)	264
NspI	RCATGY	1 cut(s)	137
NspV	TTCGAA	1 cut(s)	537
PciI	ACATGT	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	373, 497
PkrI	GCNGC	2 cut(s)	240, 661
PscI	ACATGT	1 cut(s)	133
PsiI	TTATAA	1 cut(s)	326
PspFI	CCCAGC	2 cut(s)	241, 377
PspPI	GGNCC	1 cut(s)	504
PvuII	CAGCTG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	477, 664
SatI	GCNGC	2 cut(s)	239, 660
Sau3AI	GATC	2 cut(s)	246, 468
Sau96I	GGNCC	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	625
SfuI	TTCGAA	1 cut(s)	537
SinI	GGWCC	1 cut(s)	504
Sse9I	AATT	4 cut(s)	216, 356, 403, 597
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	2 cut(s)	285, 576
StyI	CCWWGG	3 cut(s)	39, 123, 450
TaqI	TCGA	2 cut(s)	249, 537
TasI	AATT	4 cut(s)	216, 356, 403, 597
TfiI	GAWTC	2 cut(s)	373, 497
Tru1I	TTAA	2 cut(s)	477, 664
Tru9I	TTAA	2 cut(s)	477, 664
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	2 cut(s)	238, 659
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	504
XapI	RAATTY	1 cut(s)	216
XbaI	TCTAGA	1 cut(s)	284
XceI	RCATGY	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	592
XspI	CTAG	2 cut(s)	285, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.