RchiOBHm_Chr5g0076011

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016298
Physical Location & Seq
Forward (+)
81755987 .. 81756974
988 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35070

Sequence Viewer

Length: 903 bp
ATGAATGAGGTTATGAAGGCGCTAACAGATGACGAGGTCACTGCCGTCGGTGTCTACGGCATGGGAGGCGTTGGAAAGACAACCATGGTGAAACATGTTGTTGCACATGCCCGAAAAAGTGGGATTTTTGATTGTGTGATTATGGGTGTCGTATCCCAAAGCCCTGACTACAGAAAAATTCAAGGCACATTAGCAGACCTGTTAGGCGTCACATTGGGGGCAGAGACAGAAATTGGAAGAGCAGCTGGATTGAGTAAAGAGATGAAGAGAAGAAATAAGATCCTTATAATCCTGGACGACATTTGGGGGAGAACAGAGTTGTCAAAGATAGGGATTCCCAGCTACAAGGAGCTTCAAAAGTGCAAGTCCAAAGTGCTACTCACCACAAGGATACGGAATGTCTGTCATGTCATGGAGTGCCAAGAAAAGATAACACTCAACGTTCTCTCAAAAGAAGATTCTTGGACCTTGTTTGTGAGAATTGCAAGAAGGTCATTTGAATCGACCACTTTCGATGGTATAGCAAAGAAGGTAGCTGGAGAATGTAGGGGTCTACCCATTGCATTGATAGCAGTTGCAAGGGCACTTGGAGATAAAGAACTGGTGGAATGGAAAAGAGCAGCTCAACGACTAGAGAAGTCGCAATCTGCCAACCCTGACGATTATGGGGAAGCATCCGAATGTATAAAATTAAGCTATGATTACTTGAAAGATGAGGACTACAAGTCATTCTTCTTGCTCTGTTGCCTATTCCCAGAAGACCATGAAATCAATATAGAAGACTTGTTCAGGTATGCAATTGGAAAAGGATTGTTTCAAGATGCTGAAACAATGGACGAAGTCAGAGGAACAGCAGATTCAGTGCCATTCAAATTGCTCAATCTGAACATGGGTTTTTGGTGA

Protein Analysis

300

Amino Acids

33.58

Weight (kDa)

6.47

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 162 7.6e-32 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AccI GTMKAC 2 cut(s) 54, 553
AclI AACGTT 1 cut(s) 441
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 6 cut(s) 182, 356, 500, 709, 818, 871
AhdI GACNNNNNGTC 1 cut(s) 724
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 6 cut(s) 245, 342, 352, 536, 623, 696
AluI AGCT 6 cut(s) 245, 342, 352, 536, 623, 696
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 242, 620
ApoI RAATTY 1 cut(s) 177
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 465
AsuHPI GGTGA 2 cut(s) 100, 373
AvaII GGWCC 1 cut(s) 465
BaeGI GKGCMC 1 cut(s) 586
BbsI GAAGAC 2 cut(s) 765, 786
BbvI GCAGC 2 cut(s) 254, 632
BccI CCATC 1 cut(s) 509
BceAI ACGGC 2 cut(s) 29, 73
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BciT130I CCWGG 1 cut(s) 293
BciVI GTATCC 2 cut(s) 163, 384
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 23
BfuI GTATCC 2 cut(s) 163, 384
BisI GCNGC 2 cut(s) 243, 621
BlsI GCNGC 2 cut(s) 244, 622
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 465
BmeRI GACNNNNNGTC 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 465
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 2 cut(s) 683, 811
BpiI GAAGAC 2 cut(s) 765, 786
BpmI CTGGAG 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 606
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 674
BseMI GCAATG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 606
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 2 cut(s) 254, 632
BseYI CCCAGC 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 84
BspPI GGATC 1 cut(s) 274
BspQI GCTCTTC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 558
BsrI ACTGG 1 cut(s) 606
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 279
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 293
Bst6I CTCTTC 2 cut(s) 232, 260
BstACI GRCGYC 1 cut(s) 207
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 674
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 2 cut(s) 66, 569
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 2 cut(s) 98, 110
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 586
BstV1I GCAGC 2 cut(s) 254, 632
BstV2I GAAGAC 2 cut(s) 765, 786
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BsuI GTATCC 2 cut(s) 163, 384
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 674
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 39, 867
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 465
CseI GACGC 1 cut(s) 196
CviAII CATG 8 cut(s) 61, 85, 95, 107, 407, 412, 764, 889
CviJI RGCY 7 cut(s) 162, 245, 342, 352, 536, 623, 696
CviKI_1 RGCY 7 cut(s) 162, 245, 342, 352, 536, 623, 696
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
DriI GACNNNNNGTC 1 cut(s) 724
Eam1104I CTCTTC 2 cut(s) 232, 260
Eam1105I GACNNNNNGTC 1 cut(s) 724
EarI CTCTTC 2 cut(s) 232, 260
Eco130I CCWWGG 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 8 cut(s) 64, 88, 98, 110, 410, 415, 767, 892
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FatI CATG 8 cut(s) 60, 84, 94, 106, 406, 411, 763, 888
FblI GTMKAC 2 cut(s) 54, 553
Fnu4HI GCNGC 2 cut(s) 243, 621
FokI GGATG 1 cut(s) 661
Fsp4HI GCNGC 2 cut(s) 243, 621
FspBI CTAG 1 cut(s) 632
GlaI GCGC 1 cut(s) 21
GluI GCNGC 2 cut(s) 243, 621
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 558
HaeII RGCGCY 1 cut(s) 23
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 8 cut(s) 64, 88, 98, 110, 410, 415, 767, 892
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 4 cut(s) 334, 458, 500, 857
HphI GGTGA 2 cut(s) 100, 373
Hpy166II GTNNAC 2 cut(s) 55, 554
Hpy188I TCNGA 3 cut(s) 679, 845, 885
Hpy188III TCNNGA 1 cut(s) 818
Hpy8I GTNNAC 2 cut(s) 55, 554
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 10, 483, 523
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 6 cut(s) 104, 363, 485, 563, 578, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 569
HpySE526I ACGT 1 cut(s) 441
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 8 cut(s) 64, 88, 98, 110, 410, 415, 767, 892
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 1 cut(s) 279
LguI GCTCTTC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 2 cut(s) 254, 632
LweI GCATC 2 cut(s) 683, 811
MaeI CTAG 1 cut(s) 632
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 37, 208
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 7 cut(s) 249, 277, 282, 467, 724, 770, 791
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 6 cut(s) 177, 231, 480, 689, 798, 872
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 4 cut(s) 28, 59, 709, 839
MseI TTAA 1 cut(s) 692
MslI CAYNNNNRTG 1 cut(s) 679
MspA1I CMGCKG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 293
MunI CAATTG 1 cut(s) 798
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 66, 569
NcoI CCATGG 1 cut(s) 84
NdeII GATC 1 cut(s) 279
NlaIII CATG 8 cut(s) 64, 88, 98, 110, 410, 415, 767, 892
NmuCI GTSAC 2 cut(s) 37, 208
NspI RCATGY 2 cut(s) 98, 110
PciI ACATGT 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 232
PfeI GAWTC 4 cut(s) 334, 458, 500, 857
PflFI GACNNNGTC 2 cut(s) 35, 839
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 2 cut(s) 244, 622
PscI ACATGT 1 cut(s) 94
PsiI TTATAA 1 cut(s) 287
Psp1406I AACGTT 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 291
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 291
PspPI GGNCC 1 cut(s) 465
PsuI RGATCY 1 cut(s) 279
PsyI GACNNNGTC 2 cut(s) 35, 839
PvuII CAGCTG 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 679
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 692
SatI GCNGC 2 cut(s) 243, 621
Sau3AI GATC 1 cut(s) 279
Sau96I GGNCC 1 cut(s) 465
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 2 cut(s) 683, 811
SfcI CTRYAG 1 cut(s) 169
SinI GGWCC 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 679
Sse9I AATT 6 cut(s) 177, 231, 480, 689, 798, 872
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 84
TaiI ACGT 1 cut(s) 444
TaqI TCGA 2 cut(s) 503, 513
TasI AATT 6 cut(s) 177, 231, 480, 689, 798, 872
TfiI GAWTC 4 cut(s) 334, 458, 500, 857
Tru1I TTAA 1 cut(s) 692
Tru9I TTAA 1 cut(s) 692
TscAI CASTG 2 cut(s) 46, 867
TseFI GTSAC 2 cut(s) 37, 208
TseI GCWGC 2 cut(s) 242, 620
Tsp45I GTSAC 2 cut(s) 37, 208
TspDTI ATGAA 4 cut(s) 17, 29, 278, 780
TspGWI ACGGA 1 cut(s) 409
TspRI CASTG 2 cut(s) 46, 867
Tth111I GACNNNGTC 2 cut(s) 35, 839
VpaK11BI GGWCC 1 cut(s) 465
XapI RAATTY 1 cut(s) 177
XceI RCATGY 2 cut(s) 98, 110
XmiI GTMKAC 2 cut(s) 54, 553
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.