Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001226.1

Orthogroup ID

OG0016298

Physical Location & Seq

Genomic Coordinates Forward (+)

79067 .. 79831

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001226.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggatgaggttatgaaggcgcttaaagatgatgaggtcactgccgttggtgtctacggcatgggaggcgtcggcaagacaaccatggtaaaccatgttgctgcacaatcctgcaaaagtgggacttttcatcatgtgattatggctgttgtatcccaaagccccaactttggaagaattcaagacacattggcagatttattgggcgttaaattggagggcgtgacagaaattggaagagctgctagactgaatagggagataatgagaagagaaaagatccttataatcttggatgatgtttgggacagaatagaattgtcatccataggaattcctagctacgaggagcttcaaaagtgcaattccaaagtcatactcaccacacggagaaggaatgtctgtcatgcaatgaagtgccaagaaaaggtcaccctcaatatcctctcagaagaagattcttggaccttgtttgtgagaaatgcaaggtcttttgaatcgatcacttttgagggtgtagcgaggaaagtagctggagaatgcctacccattgccttgatagcggttgcaagggcactcggagataaagatcaggtggaatggcaaaaagcagctcgaagattagagaagtcgcaatctgcaaccgttgaggatgagcaagatgccttcaaatgtataaaatttagctatgattacttgaaagatgaggattccaaatcatgcttcttgctctgttgcctatacccagaagatgaggacatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

254

Amino Acids

28.53

Weight (kDa)

5.42

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43661
rosa_chinensis	RchiOBHm_Chr1g0353701 RchiOBHm_Chr3g0468981 RchiOBHm_Chr5g0076011 RchiOBHm_Chr5g0079501
rosa_laevigata	RLG00000002616 RLG00000002880
rosa_multiflora	Rmu_co7975680.1_g000001 Rmu_co8055250.1_g000001 Rmu_sc0001226.1_g000015 Rmu_sc0009227.1_g000012 Rmu_sc0029401.1_g000001
rosa_rugosa	Rorug05G0363200
rosa_wichuraiana	Rw7G022040 Rw7G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	1 cut(s)	563
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	3 cut(s)	177, 333, 680
AcyI	GRCGYC	1 cut(s)	69
AfiI	CCNNNNNNNGG	2 cut(s)	170, 427
AgsI	TTSAA	5 cut(s)	182, 356, 497, 670, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	707, 739
AluBI	AGCT	6 cut(s)	242, 342, 352, 533, 614, 687
AluI	AGCT	6 cut(s)	242, 342, 352, 533, 614, 687
AlwI	GGATC	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	101, 242, 611
ApoI	RAATTY	3 cut(s)	177, 333, 680
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	373, 424
AvaII	GGWCC	1 cut(s)	465
BaeGI	GKGCMC	1 cut(s)	577
BbvI	GCAGC	3 cut(s)	88, 229, 623
BceAI	ACGGC	2 cut(s)	29, 73
BciVI	GTATCC	1 cut(s)	163
BfaI	CTAG	2 cut(s)	246, 339
BfoI	RGCGCY	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	163
BisI	GCNGC	3 cut(s)	102, 243, 612
BlsI	GCNGC	3 cut(s)	103, 244, 613
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	465
BmsI	GCATC	1 cut(s)	652
BpmI	CTGGAG	1 cut(s)	555
Bsa29I	ATCGAT	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	588
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 427
Bse3DI	GCAATG	2 cut(s)	417, 549
Bse8I	GATNNNNATC	1 cut(s)	588
BseCI	ATCGAT	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	4 cut(s)	10, 301, 323, 658
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	170, 427
BseMI	GCAATG	2 cut(s)	417, 549
BseMII	CTCAG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	3 cut(s)	88, 229, 623
BsgI	GTGCAG	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	500
BslFI	GGGAC	2 cut(s)	136, 320
BslI	CCNNNNNNNGG	2 cut(s)	170, 427
BsmFI	GGGAC	2 cut(s)	136, 320
BsmI	GAATGC	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	3 cut(s)	279, 501, 589
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	1 cut(s)	563
BspCNI	CTCAG	1 cut(s)	461
BspDI	ATCGAT	1 cut(s)	500
BspPI	GGATC	1 cut(s)	274
BspQI	GCTCTTC	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	417, 549
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	3 cut(s)	279, 501, 589
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	2 cut(s)	232, 265
BstACI	GRCGYC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	448
BstDSI	CCRYGG	1 cut(s)	84
BstEII	GGTNACC	1 cut(s)	430
BstF5I	GGATG	4 cut(s)	10, 301, 323, 658
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	3 cut(s)	282, 504, 592
BstMBI	GATC	3 cut(s)	279, 501, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 560
BstPI	GGTNACC	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	577
BstV1I	GCAGC	3 cut(s)	88, 229, 623
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
Bsu15I	ATCGAT	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	163
BsuTUI	ATCGAT	1 cut(s)	500
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	4 cut(s)	10, 301, 323, 658
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	465
ClaI	ATCGAT	1 cut(s)	500
CseI	GACGC	1 cut(s)	58
CviAII	CATG	6 cut(s)	61, 85, 95, 134, 407, 720
CviJI	RGCY	8 cut(s)	146, 162, 242, 342, 352, 533, 614, 687
CviKI_1	RGCY	8 cut(s)	146, 162, 242, 342, 352, 533, 614, 687
DdeI	CTNAG	1 cut(s)	448
DpnI	GATC	3 cut(s)	281, 503, 591
DpnII	GATC	3 cut(s)	279, 501, 589
Eam1104I	CTCTTC	2 cut(s)	232, 265
EarI	CTCTTC	2 cut(s)	232, 265
Eco130I	CCWWGG	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	430
EcoO65I	GGTNACC	1 cut(s)	430
EcoRI	GAATTC	2 cut(s)	177, 333
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	6 cut(s)	64, 88, 98, 137, 410, 723
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FaqI	GGGAC	2 cut(s)	136, 320
FatI	CATG	6 cut(s)	60, 84, 94, 133, 406, 719
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	102, 243, 612
FokI	GGATG	4 cut(s)	17, 308, 310, 665
Fsp4HI	GCNGC	3 cut(s)	102, 243, 612
FspBI	CTAG	2 cut(s)	246, 339
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	102, 243, 612
GsuI	CTGGAG	1 cut(s)	555
HaeII	RGCGCY	1 cut(s)	23
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	6 cut(s)	64, 88, 98, 137, 410, 723
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	3 cut(s)	458, 497, 710
HphI	GGTGA	2 cut(s)	373, 424
Hpy166II	GTNNAC	2 cut(s)	55, 91
Hpy188I	TCNGA	3 cut(s)	451, 581, 764
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	2 cut(s)	55, 91
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	10, 387, 676
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4V	TGCA	7 cut(s)	104, 114, 363, 410, 485, 569, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 560
HpyF3I	CTNAG	1 cut(s)	448
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	6 cut(s)	64, 88, 98, 137, 410, 723
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	3 cut(s)	279, 501, 589
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	4 cut(s)	124, 519, 578, 759
Lsp1109I	GCAGC	3 cut(s)	88, 229, 623
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	2 cut(s)	246, 339
MaeIII	GTNAC	3 cut(s)	37, 223, 430
MalI	GATC	3 cut(s)	281, 503, 591
MboI	GATC	3 cut(s)	279, 501, 589
MboII	GAAGA	7 cut(s)	186, 249, 282, 464, 467, 630, 761
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	7 cut(s)	177, 212, 231, 317, 333, 364, 680
MseI	TTAA	2 cut(s)	24, 210
Mva1269I	GAATGC	1 cut(s)	545
MwoI	GCNNNNNNNGC	2 cut(s)	66, 560
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	3 cut(s)	279, 501, 589
NlaIII	CATG	6 cut(s)	64, 88, 98, 137, 410, 723
NmuCI	GTSAC	3 cut(s)	37, 223, 430
PciSI	GCTCTTC	1 cut(s)	232
PctI	GAATGC	1 cut(s)	545
PfeI	GAWTC	3 cut(s)	458, 497, 710
PkrI	GCNGC	3 cut(s)	103, 244, 613
PsiI	TTATAA	1 cut(s)	287
PspEI	GGTNACC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	24, 210
SatI	GCNGC	3 cut(s)	102, 243, 612
Sau3AI	GATC	3 cut(s)	279, 501, 589
Sau96I	GGNCC	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	577
SfaNI	GCATC	1 cut(s)	652
SinI	GGWCC	1 cut(s)	465
Sse9I	AATT	7 cut(s)	177, 212, 231, 317, 333, 364, 680
SsiI	CCGC	1 cut(s)	563
SspMI	CTAG	2 cut(s)	246, 339
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	646
TaqI	TCGA	2 cut(s)	500, 616
TasI	AATT	7 cut(s)	177, 212, 231, 317, 333, 364, 680
TfiI	GAWTC	3 cut(s)	458, 497, 710
Tru1I	TTAA	2 cut(s)	24, 210
Tru9I	TTAA	2 cut(s)	24, 210
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	3 cut(s)	37, 223, 430
TseI	GCWGC	3 cut(s)	101, 242, 611
Tsp45I	GTSAC	3 cut(s)	37, 223, 430
TspDTI	ATGAA	3 cut(s)	29, 119, 428
TspGWI	ACGGA	1 cut(s)	403
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	3 cut(s)	177, 333, 680
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	2 cut(s)	246, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.