RLG00000002616

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
37010237 .. 37019435
9199 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002616

Sequence Viewer

Length: 1512 bp
ATGGATGATCAAGATCTTAAAGTAGGGGATGTTATTTCTCCCAGACTTCTAACAGCAATTGAAGAATCAAGGTTTGCAATTGTGGTTCTCTCGCCAAACTATGCCTTTTCTACTTGGTGTTTGGAGGAACTTACACAGATATGTCAATGCATGGAAGACAACAAAATTCTTCCACTTTTTTATAATGTCAGTCCTACTGATATAACAAGGTCACTGCCGTTGGGGTGTACGGCATGGGGCGTTGGAAAGACAACCCTTGTGGAATATGTCGGTCAAGAAGCTCGGAATCAAGGCCTTTTTGATCATGTGATTATGGTTACAGTTAATCAAACCCCTGATTTGAAAAGAATTCAAGGCATATTGGCAGATAGGCTAGGCATCAAATTGATGAACGAGACAGATGAGGGAAGAGCTTCTAGATTGTATTCAGAGACAATGAGAAGAAACAAAACCCTTCTAATCTTGGACAACGTTTGGGGTAGACTAGACCTGCCAAGCATAGGAATTCCCACCTTCGACATTCTTAAGAGTCGCAACTCCAAAGTCCTACTTACCACAAGGAGACATACTGATGGATGTGTTAGGATGCATGATGTCATCCGGGATACAGCCATTCAAATTACACAATCTGAAGATGAGGACGGATTTCTAGTAAAAGTTGGCTGTGGTTTGAAGAATTGGCCATGTCGATTGCGTGAAGGACACTCTGCAATTTCAGTCATGAAGAACGACATTCGAGAGCTACCTGAGGAGCTGAAGCTTGAGATTCTCAGTATGAAGGAATACCCTCTAAAGGAATTGTCAACAGAAATAAGATATTTGACCAATTTAAGGGTGTTGGATGTTAGTGCTGAGGGTTCAGTGGGTGGAGGTATCGTCAGAATTCCATCTGAGGTGATATCAAAATTGCGTAAATTAGAAGAACTGTGCTTGCACAGTGGATTTTGGGACTGTAGGAGTAAAGTTGAGGGACAAGGAGAAACAACTAATGTTAGCTTTGATGAGAGCAAAGGAGGAGTGTCTTCAAAATGGGTAGAGAAAAAGATAGAAAGCTGGTCACGTGAGGCTTATCTCTTCTCCAAAAGGGTCGCCGGCGTTTGTGATATTATCGCTGGGTTGCTGCTGGATCAGCTAAGGCTAGCGGGGCTGGTTACCACTGGTTCTGGGGGAGCAAAGAAGCAGCTGCTGGGCACGAGATTGAAGGTTGATGATCTCACGAGGCTGCTGGTGGTGGCTCCTAGCACTGTTGGCGGATGGTGTTACGCGGTGATAACAGTAATAGCGTGGCTGCTGTGCATTGAGCATAATTGCTGTAAGAGTGCTACGTTGAGAATAACGCGGAATTACCCGCAAATCGGTTGCACTGGAGGAGCTGATGCTGCCAAGAGTCCTCAGATGCGGGTAAAACAGCGATTGTGCAATTCTCAGCCAGCAGCTAATCAAAGGAACACAGCTGAGAACATGGAGGACAAAAGGAACGGTGTAGCAGGGAAGGTGGAATCGGAGTTGTAG

Protein Analysis

504

Amino Acids

55.96

Weight (kDa)

7.82

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR_2 PF13676 1 - 63 3.1e-08 TIR domain
TIR PF01582 2 - 68 2.3e-18 TIR domain
NB-ARC PF00931 80 - 209 2.3e-14 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
Acc36I ACCTGC 1 cut(s) 498
AccI GTMKAC 1 cut(s) 481
AccII CGCG 2 cut(s) 1265, 1339
AciI CCGC 6 cut(s) 1142, 1251, 1265, 1339, 1349, 1399
AclI AACGTT 1 cut(s) 471
AclWI GGATC 1 cut(s) 1134
AcoI YGGCCR 1 cut(s) 680
AcsI RAATTY 4 cut(s) 165, 348, 504, 882
AcuI CTGAAG 2 cut(s) 651, 776
AcvI CACGTG 1 cut(s) 1061
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 4 cut(s) 500, 793, 831, 1355
AflII CTTAAG 1 cut(s) 524
AgsI TTSAA 7 cut(s) 62, 343, 353, 617, 673, 1026, 1201
Alw26I GTCTC 3 cut(s) 389, 425, 556
AlwI GGATC 1 cut(s) 1134
AlwNI CAGNNNCTG 1 cut(s) 1186
AoxI GGCC 2 cut(s) 292, 680
ApeKI GCWGC 7 cut(s) 1120, 1180, 1183, 1222, 1288, 1379, 1433
ApoI RAATTY 4 cut(s) 165, 348, 504, 882
Asp700I GAANNNNTTC 1 cut(s) 412
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 2 cut(s) 907, 1279
AsuNHI GCTAGC 1 cut(s) 1138
AxyI CCTNAGG 1 cut(s) 747
BaeGI GKGCMC 1 cut(s) 1193
BalI TGGCCA 1 cut(s) 682
BauI CACGAG 2 cut(s) 1192, 1216
BbrPI CACGTG 1 cut(s) 1061
BbsI GAAGAC 2 cut(s) 162, 1014
BbvCI CCTCAGC 1 cut(s) 852
BbvI GCAGC 7 cut(s) 1107, 1170, 1192, 1209, 1275, 1366, 1445
BccI CCATC 3 cut(s) 566, 895, 1248
BceAI ACGGC 2 cut(s) 202, 246
BciVI GTATCC 1 cut(s) 598
BclI TGATCA 2 cut(s) 7, 301
BcnI CCSGG 1 cut(s) 602
BcoDI GTCTC 3 cut(s) 389, 425, 556
BfaI CTAG 6 cut(s) 374, 417, 485, 650, 1139, 1239
BfmI CTRYAG 1 cut(s) 952
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 498
BfuI GTATCC 1 cut(s) 598
BglII AGATCT 1 cut(s) 13
BisI GCNGC 7 cut(s) 1121, 1181, 1184, 1223, 1289, 1380, 1434
BlsI GCNGC 7 cut(s) 1122, 1182, 1185, 1224, 1290, 1381, 1435
Bme1390I CCNGG 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 1236
BmrFI CCNGG 1 cut(s) 602
BmsI GCATC 4 cut(s) 387, 576, 1366, 1386
BmtI GCTAGC 1 cut(s) 1142
BpiI GAAGAC 2 cut(s) 162, 1014
BpmI CTGGAG 1 cut(s) 1386
Bpu10I CCTNAGC 2 cut(s) 852, 1133
BpuEI CTTGAG 1 cut(s) 782
BpuMI CCSGG 1 cut(s) 602
BsaAI YACGTR 1 cut(s) 1061
BsaBI GATNNNNATC 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 861, 891
Bsc4I CCNNNNNNNGG 4 cut(s) 500, 793, 831, 1355
Bse118I RCCGGY 1 cut(s) 1091
Bse1I ACTGG 2 cut(s) 1162, 1369
Bse21I CCTNAGG 1 cut(s) 747
Bse8I GATNNNNATC 1 cut(s) 12
BseGI GGATG 7 cut(s) 10, 34, 581, 591, 597, 847, 1259
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 4 cut(s) 500, 793, 831, 1355
BseMII CTCAG 7 cut(s) 738, 784, 843, 882, 1406, 1439, 1446
BseNI ACTGG 2 cut(s) 1162, 1369
BseRI GAGGAG 3 cut(s) 764, 1029, 1383
BseSI GKGCMC 1 cut(s) 1193
BseXI GCAGC 7 cut(s) 1107, 1170, 1192, 1209, 1275, 1366, 1445
BseYI CCCAGC 2 cut(s) 1112, 1186
Bsh1236I CGCG 2 cut(s) 1265, 1339
BshFI GGCC 2 cut(s) 294, 682
BsiSI CCGG 2 cut(s) 601, 1092
BslFI GGGAC 2 cut(s) 962, 984
BslI CCNNNNNNNGG 4 cut(s) 500, 793, 831, 1355
BsmAI GTCTC 3 cut(s) 389, 425, 556
BsmFI GGGAC 2 cut(s) 962, 984
BsnI GGCC 2 cut(s) 294, 682
Bsp1286I GDGCHC 1 cut(s) 1193
Bsp143I GATC 5 cut(s) 7, 13, 301, 1126, 1210
BspACI CCGC 6 cut(s) 1142, 1251, 1265, 1339, 1349, 1399
BspANI GGCC 2 cut(s) 294, 682
BspCNI CTCAG 7 cut(s) 739, 783, 844, 883, 1405, 1438, 1447
BspFNI CGCG 2 cut(s) 1265, 1339
BspHI TCATGA 1 cut(s) 720
BspLI GGNNCC 1 cut(s) 1236
BspMI ACCTGC 1 cut(s) 498
BspOI GCTAGC 1 cut(s) 1142
BspPI GGATC 1 cut(s) 1134
BspQI GCTCTTC 1 cut(s) 403
BspTI CTTAAG 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 1091
BsrI ACTGG 2 cut(s) 1162, 1369
BssAI RCCGGY 1 cut(s) 1091
BssMI GATC 5 cut(s) 7, 13, 301, 1126, 1210
BssSI CACGAG 2 cut(s) 1192, 1216
Bst2BI CACGAG 2 cut(s) 1192, 1216
Bst4CI ACNGT 7 cut(s) 322, 927, 938, 953, 1246, 1276, 1481
Bst6I CTCTTC 2 cut(s) 403, 1079
BstAFI CTTAAG 1 cut(s) 524
BstBAI YACGTR 1 cut(s) 1061
BstC8I GCNNGC 4 cut(s) 932, 1093, 1140, 1431
BstDEI CTNAG 8 cut(s) 747, 770, 852, 891, 1133, 1392, 1425, 1455
BstEII GGTNACC 1 cut(s) 1150
BstF5I GGATG 7 cut(s) 10, 34, 581, 591, 597, 847, 1259
BstFNI CGCG 2 cut(s) 1265, 1339
BstKTI GATC 5 cut(s) 10, 16, 304, 1129, 1213
BstMAI GTCTC 3 cut(s) 389, 425, 556
BstMBI GATC 5 cut(s) 7, 13, 301, 1126, 1210
BstMWI GCNNNNNNNGC 4 cut(s) 1129, 1144, 1248, 1379
BstPI GGTNACC 1 cut(s) 1150
BstSCI CCNGG 1 cut(s) 600
BstSFI CTRYAG 1 cut(s) 952
BstSLI GKGCMC 1 cut(s) 1193
BstUI CGCG 2 cut(s) 1265, 1339
BstV1I GCAGC 7 cut(s) 1107, 1170, 1192, 1209, 1275, 1366, 1445
BstV2I GAAGAC 2 cut(s) 162, 1014
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
Bsu36I CCTNAGG 1 cut(s) 747
BsuI GTATCC 1 cut(s) 598
BsuRI GGCC 2 cut(s) 294, 682
BtsCI GGATG 7 cut(s) 10, 34, 581, 591, 597, 847, 1259
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 6 cut(s) 212, 867, 943, 1155, 1242, 1362
BveI ACCTGC 1 cut(s) 498
Cac8I GCNNGC 4 cut(s) 932, 1093, 1140, 1431
CaiI CAGNNNCTG 1 cut(s) 1186
CciI TCATGA 1 cut(s) 720
Cfr10I RCCGGY 1 cut(s) 1091
Csp6I GTAC 1 cut(s) 228
CspCI CAANNNNNGTGG 2 cut(s) 240, 275
CviAII CATG 7 cut(s) 151, 234, 305, 590, 684, 721, 1462
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 8 cut(s) 747, 770, 852, 891, 1133, 1392, 1425, 1455
DpnI GATC 5 cut(s) 9, 15, 303, 1128, 1212
DpnII GATC 5 cut(s) 7, 13, 301, 1126, 1210
EaeI YGGCCR 1 cut(s) 680
Eam1104I CTCTTC 2 cut(s) 403, 1079
EarI CTCTTC 2 cut(s) 403, 1079
EciI GGCGGA 1 cut(s) 1266
Eco147I AGGCCT 1 cut(s) 294
Eco32I GATATC 1 cut(s) 900
Eco57I CTGAAG 2 cut(s) 651, 776
Eco72I CACGTG 1 cut(s) 1061
Eco81I CCTNAGG 1 cut(s) 747
Eco91I GGTNACC 1 cut(s) 1150
EcoO65I GGTNACC 1 cut(s) 1150
EcoRI GAATTC 3 cut(s) 348, 504, 882
EcoRV GATATC 1 cut(s) 900
EcoT22I ATGCAT 2 cut(s) 152, 591
FaeI CATG 7 cut(s) 154, 237, 308, 593, 687, 724, 1465
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 2 cut(s) 962, 984
FatI CATG 7 cut(s) 150, 233, 304, 589, 683, 720, 1461
FauI CCCGC 3 cut(s) 1135, 1356, 1392
FbaI TGATCA 2 cut(s) 7, 301
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 7 cut(s) 1121, 1181, 1184, 1223, 1289, 1380, 1434
FokI GGATG 7 cut(s) 17, 41, 584, 588, 598, 854, 1266
Fsp4HI GCNGC 7 cut(s) 1121, 1181, 1184, 1223, 1289, 1380, 1434
FspBI CTAG 6 cut(s) 374, 417, 485, 650, 1139, 1239
GluI GCNGC 7 cut(s) 1121, 1181, 1184, 1223, 1289, 1380, 1434
GsaI CCCAGC 2 cut(s) 1116, 1190
GsuI CTGGAG 1 cut(s) 1386
HaeIII GGCC 2 cut(s) 294, 682
HapII CCGG 2 cut(s) 601, 1092
Hin1II CATG 7 cut(s) 154, 237, 308, 593, 687, 724, 1465
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 6 cut(s) 65, 286, 529, 766, 1387, 1499
HpaII CCGG 2 cut(s) 601, 1092
HphI GGTGA 2 cut(s) 907, 1279
Hpy166II GTNNAC 3 cut(s) 228, 482, 804
Hpy188I TCNGA 7 cut(s) 285, 430, 631, 881, 892, 1395, 1504
Hpy188III TCNNGA 6 cut(s) 11, 275, 417, 721, 737, 1216
Hpy8I GTNNAC 3 cut(s) 228, 482, 804
HpyAV CCTTC 6 cut(s) 464, 523, 692, 772, 1195, 1486
HpyCH4III ACNGT 7 cut(s) 322, 927, 938, 953, 1246, 1276, 1481
HpyCH4IV ACGT 3 cut(s) 471, 1060, 1325
HpyCH4V TGCA 8 cut(s) 77, 150, 589, 710, 934, 1296, 1362, 1419
HpyF10VI GCNNNNNNNGC 4 cut(s) 1129, 1144, 1248, 1379
HpyF3I CTNAG 8 cut(s) 747, 770, 852, 891, 1133, 1392, 1425, 1455
HpySE526I ACGT 3 cut(s) 471, 1060, 1325
Hsp92II CATG 7 cut(s) 154, 237, 308, 593, 687, 724, 1465
KroI GCCGGC 1 cut(s) 1091
KroNI GCCGGC 1 cut(s) 1093
Ksp22I TGATCA 2 cut(s) 7, 301
Kzo9I GATC 5 cut(s) 7, 13, 301, 1126, 1210
LguI GCTCTTC 1 cut(s) 403
LmnI GCTCC 4 cut(s) 751, 1169, 1240, 1370
Lsp1109I GCAGC 7 cut(s) 1107, 1170, 1192, 1209, 1275, 1366, 1445
LweI GCATC 4 cut(s) 387, 576, 1366, 1386
MaeI CTAG 6 cut(s) 374, 417, 485, 650, 1139, 1239
MaeII ACGT 3 cut(s) 471, 1060, 1325
MaeIII GTNAC 5 cut(s) 210, 316, 1056, 1150, 1259
MalI GATC 5 cut(s) 9, 15, 303, 1128, 1212
MboI GATC 5 cut(s) 7, 13, 301, 1126, 1210
MfeI CAATTG 2 cut(s) 57, 78
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 1 cut(s) 1193
MlsI TGGCCA 1 cut(s) 682
MluNI TGGCCA 1 cut(s) 682
MlyI GAGTC 2 cut(s) 538, 1396
MmeI TCCRAC 2 cut(s) 223, 819
Mox20I TGGCCA 1 cut(s) 682
Mph1103I ATGCAT 2 cut(s) 152, 591
MreI CGCCGGCG 1 cut(s) 1091
MroNI GCCGGC 1 cut(s) 1091
MroXI GAANNNNTTC 1 cut(s) 412
MscI TGGCCA 1 cut(s) 682
MseI TTAA 4 cut(s) 18, 324, 525, 830
MslI CAYNNNNRTG 2 cut(s) 139, 570
Msp20I TGGCCA 1 cut(s) 682
MspA1I CMGCKG 2 cut(s) 1183, 1454
MspCI CTTAAG 1 cut(s) 524
MspI CCGG 2 cut(s) 601, 1092
MspR9I CCNGG 1 cut(s) 602
MunI CAATTG 2 cut(s) 57, 78
MvnI CGCG 2 cut(s) 1265, 1339
MwoI GCNNNNNNNGC 4 cut(s) 1129, 1144, 1248, 1379
NaeI GCCGGC 1 cut(s) 1093
NciI CCSGG 1 cut(s) 602
NdeII GATC 5 cut(s) 7, 13, 301, 1126, 1210
NgoMIV GCCGGC 1 cut(s) 1091
NheI GCTAGC 1 cut(s) 1138
NlaIII CATG 7 cut(s) 154, 237, 308, 593, 687, 724, 1465
NlaIV GGNNCC 1 cut(s) 1236
NmuCI GTSAC 2 cut(s) 210, 1056
NsiI ATGCAT 2 cut(s) 152, 591
PagI TCATGA 1 cut(s) 720
PceI AGGCCT 1 cut(s) 294
PciSI GCTCTTC 1 cut(s) 403
PdiI GCCGGC 1 cut(s) 1093
PdmI GAANNNNTTC 1 cut(s) 412
PfeI GAWTC 4 cut(s) 65, 286, 766, 1499
PfoI TCCNGGA 1 cut(s) 600
PkrI GCNGC 7 cut(s) 1122, 1182, 1185, 1224, 1290, 1381, 1435
PleI GAGTC 2 cut(s) 537, 1395
PmaCI CACGTG 1 cut(s) 1061
PmlI CACGTG 1 cut(s) 1061
PpsI GAGTC 2 cut(s) 537, 1395
Ppu21I YACGTR 1 cut(s) 1061
PsiI TTATAA 1 cut(s) 183
Psp1406I AACGTT 1 cut(s) 471
PspCI CACGTG 1 cut(s) 1061
PspEI GGTNACC 1 cut(s) 1150
PspFI CCCAGC 2 cut(s) 1112, 1186
PspN4I GGNNCC 1 cut(s) 1236
PstNI CAGNNNCTG 1 cut(s) 1186
PsuI RGATCY 1 cut(s) 13
PvuII CAGCTG 2 cut(s) 1183, 1454
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 2 cut(s) 139, 570
SapI GCTCTTC 1 cut(s) 403
SaqAI TTAA 4 cut(s) 18, 324, 525, 830
SatI GCNGC 7 cut(s) 1121, 1181, 1184, 1223, 1289, 1380, 1434
Sau3AI GATC 5 cut(s) 7, 13, 301, 1126, 1210
SchI GAGTC 2 cut(s) 538, 1396
ScrFI CCNGG 1 cut(s) 602
SduI GDGCHC 1 cut(s) 1193
SfaNI GCATC 4 cut(s) 387, 576, 1366, 1386
SfcI CTRYAG 1 cut(s) 952
SgrAI CRCCGGYG 1 cut(s) 1091
SmiMI CAYNNNNRTG 2 cut(s) 139, 570
SmlI CTYRAG 2 cut(s) 524, 761
SmoI CTYRAG 2 cut(s) 524, 761
SseBI AGGCCT 1 cut(s) 294
SsiI CCGC 6 cut(s) 1142, 1251, 1265, 1339, 1349, 1399
SspMI CTAG 6 cut(s) 374, 417, 485, 650, 1139, 1239
StuI AGGCCT 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 600
TaaI ACNGT 7 cut(s) 322, 927, 938, 953, 1246, 1276, 1481
TaiI ACGT 3 cut(s) 474, 1063, 1328
TaqI TCGA 3 cut(s) 516, 688, 736
TaqII GACCGA 1 cut(s) 260
TfiI GAWTC 4 cut(s) 65, 286, 766, 1499
Tru1I TTAA 4 cut(s) 18, 324, 525, 830
Tru9I TTAA 4 cut(s) 18, 324, 525, 830
TscAI CASTG 6 cut(s) 219, 867, 943, 1162, 1249, 1369
TseFI GTSAC 2 cut(s) 210, 1056
TseI GCWGC 7 cut(s) 1120, 1180, 1183, 1222, 1288, 1379, 1433
Tsp45I GTSAC 2 cut(s) 210, 1056
TspDTI ATGAA 3 cut(s) 404, 737, 791
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 6 cut(s) 219, 867, 943, 1162, 1249, 1369
Vha464I CTTAAG 1 cut(s) 524
XapI RAATTY 4 cut(s) 165, 348, 504, 882
XbaI TCTAGA 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 412
XspI CTAG 6 cut(s) 374, 417, 485, 650, 1139, 1239
Zsp2I ATGCAT 2 cut(s) 152, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.