Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009227.1

Orthogroup ID

OG0016298

Physical Location & Seq

Genomic Coordinates Forward (+)

43753 .. 44250

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009227.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgtccacagtagaatttaaagcatttgaagcaacaagagaagccatggataaggttatgaagacgcttagagatgacaatgtcactggcattgggatctatggaatgggtggagttggaaaaacaactttggttgaacatgtcggtacacaagccaaaaattgtaggctatttgatcaagtgattacggctgttgcatcccaaacccctgacacaaggaaaattcaaggcacatttgcagatctactgggcttgaaactggaggaggagacagaatttggaagagcctgtaggttgaagaagaagataattagaggaaccaggatactcataatcttggatgacaaatggaagagaattgacttttcaagtatcggaattccgagccacaatgaacttcaaagatgcaattccaaagtcctactgaccaacagaagattgagggggtctattgtttatggaattagtagaacttttaaagaaatctatggaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

165

Amino Acids

18.57

Weight (kDa)

9.67

Isoelectric Point (pI)

21.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43661
rosa_chinensis	RchiOBHm_Chr1g0353701 RchiOBHm_Chr3g0468981 RchiOBHm_Chr5g0076011 RchiOBHm_Chr5g0079501
rosa_laevigata	RLG00000002616 RLG00000002880
rosa_multiflora	Rmu_co7975680.1_g000001 Rmu_co8055250.1_g000001 Rmu_sc0001226.1_g000015 Rmu_sc0009227.1_g000012 Rmu_sc0029401.1_g000001
rosa_rugosa	Rorug05G0363200
rosa_wichuraiana	Rw7G022040 Rw7G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	5 cut(s)	14, 222, 275, 378, 492
AfaI	GTAC	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	7 cut(s)	29, 137, 227, 256, 298, 369, 401
AjnI	CCWGG	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	104
ApoI	RAATTY	5 cut(s)	14, 222, 275, 378, 492
BbsI	GAAGAC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	322
BciVI	GTATCC	1 cut(s)	318
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	289
BfuI	GTATCC	1 cut(s)	318
BglII	AGATCT	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	322
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	2 cut(s)	206, 395
BmuI	ACTGGG	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	45
Bse1I	ACTGG	3 cut(s)	91, 252, 264
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	197, 346
BseNI	ACTGG	3 cut(s)	91, 252, 264
BseRI	GAGGAG	2 cut(s)	278, 281
BsmAI	GTCTC	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	96, 175, 241
Bsp19I	CCATGG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	319
BspPI	GGATC	1 cut(s)	104
BspQI	GCTCTTC	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	91, 252, 264
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	96, 175, 241
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	2 cut(s)	277, 347
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	197, 346
BstKTI	GATC	3 cut(s)	99, 178, 244
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	3 cut(s)	96, 175, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	2 cut(s)	96, 241
BstYI	RGATCY	2 cut(s)	96, 241
BsuI	GTATCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	197, 346
BtsIMutI	CAGTG	1 cut(s)	84
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	2 cut(s)	46, 140
CviJI	RGCY	7 cut(s)	44, 155, 169, 191, 252, 287, 387
CviKI_1	RGCY	7 cut(s)	44, 155, 169, 191, 252, 287, 387
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	3 cut(s)	98, 177, 243
DpnII	GATC	3 cut(s)	96, 175, 241
DraI	TTTAAA	2 cut(s)	19, 478
Eam1104I	CTCTTC	2 cut(s)	277, 347
EarI	CTCTTC	2 cut(s)	277, 347
Eco130I	CCWWGG	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	49, 143
FaiI	YATR	7 cut(s)	47, 59, 102, 141, 332, 459, 489
FatI	CATG	2 cut(s)	45, 139
FbaI	TGATCA	1 cut(s)	175
FokI	GGATG	2 cut(s)	184, 353
GsuI	CTGGAG	1 cut(s)	281
HgaI	GACGC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	49, 143
Hpy166II	GTNNAC	2 cut(s)	6, 149
Hpy188I	TCNGA	2 cut(s)	377, 384
Hpy8I	GTNNAC	2 cut(s)	6, 149
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	3 cut(s)	197, 239, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	49, 143
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	96, 175, 241
LguI	GCTCTTC	1 cut(s)	277
LpnPI	CCDG	7 cut(s)	72, 222, 233, 245, 301, 307, 334
LweI	GCATC	2 cut(s)	206, 395
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	3 cut(s)	98, 177, 243
MboI	GATC	3 cut(s)	96, 175, 241
MboII	GAAGA	7 cut(s)	73, 294, 310, 313, 316, 364, 447
MflI	RGATCY	2 cut(s)	96, 241
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	4 cut(s)	256, 259, 308, 435
MseI	TTAA	3 cut(s)	18, 477, 496
MspR9I	CCNGG	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	96, 175, 241
NlaIII	CATG	2 cut(s)	49, 143
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	143
PciI	ACATGT	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	277
PflFI	GACNNNGTC	1 cut(s)	80
PscI	ACATGT	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	96, 241
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	3 cut(s)	18, 477, 496
Sau3AI	GATC	3 cut(s)	96, 175, 241
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	2 cut(s)	57, 296
SfaNI	GCATC	2 cut(s)	206, 395
SfcI	CTRYAG	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	320
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	10
Tru1I	TTAA	3 cut(s)	18, 477, 496
Tru9I	TTAA	3 cut(s)	18, 477, 496
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	74, 408
TspRI	CASTG	1 cut(s)	91
Tth111I	GACNNNGTC	1 cut(s)	80
XapI	RAATTY	5 cut(s)	14, 222, 275, 378, 492
XceI	RCATGY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.