RLG00000002880

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016298
Physical Location & Seq
Forward (+)
41086307 .. 41087217
911 bp
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UTR
Exon/CDS
Intron
RLM00000002880

Sequence Viewer

Length: 540 bp
ATGGATGATCAAGATCTTAAAGTAAGGGATGTTATTTCTCCCAGTCTTCTAACAGCAATTGAAGAATCAAGGACTGAGAGAGAACTTGTTGATGCCATTGTGGACTTTGTCTGCACTAAAGTCCTACCTACTACAACTGAGTCCACGGGGGATTTCACAGTATTTGAAGCAACAAGACAAGCCATAGATCAGCTTATGGAGGCATTAAAAGATAACAAGGTCACTACCGTTGGGGTGTACGGCATGGGGGGCGTTGGAAAGACAACCCTTGTGGAACATGTCGGTCAAGAAGCTCGGAAGCAAGGCCTTTTTGATCATGTGATTATGGTTACAGTTAATCAAACCCCTGATTTGAAAAGAATTCAAGGCATATTGGCAGATAAGCTAGGCATCAAATTGATGAACGAGACAGATGAGGGAAGAGCTTCTAGATTGTATTCAGAGACAATGAGAAGAAACAAAACCCTTCTAATCTTGGACAACGTTTGGGGTAGACTAGACCTGCCAAGCATAGGAATTCCCACCTTCGACATTCTTTAG

Protein Analysis

180

Amino Acids

19.92

Weight (kDa)

4.9

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 60 - 174 3.1e-19 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 510
AccI GTMKAC 1 cut(s) 493
AclI AACGTT 1 cut(s) 483
AcsI RAATTY 2 cut(s) 360, 516
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 4 cut(s) 62, 167, 355, 365
AluBI AGCT 4 cut(s) 193, 293, 385, 425
AluI AGCT 4 cut(s) 193, 293, 385, 425
Alw26I GTCTC 2 cut(s) 401, 437
AoxI GGCC 1 cut(s) 304
ApoI RAATTY 2 cut(s) 360, 516
Asp700I GAANNNNTTC 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 38
BceAI ACGGC 1 cut(s) 256
BclI TGATCA 2 cut(s) 7, 313
BcoDI GTCTC 2 cut(s) 401, 437
BfaI CTAG 3 cut(s) 386, 429, 497
BfuAI ACCTGC 1 cut(s) 510
BglII AGATCT 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 2 cut(s) 82, 399
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 10, 34
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMII CTCAG 2 cut(s) 66, 129
BseNI ACTGG 1 cut(s) 42
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 2 cut(s) 401, 437
BsnI GGCC 1 cut(s) 306
Bsp143I GATC 4 cut(s) 7, 13, 187, 313
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 2 cut(s) 67, 130
BspMI ACCTGC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 415
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 4 cut(s) 7, 13, 187, 313
Bst4CI ACNGT 3 cut(s) 160, 229, 334
Bst6I CTCTTC 1 cut(s) 415
BstDEI CTNAG 2 cut(s) 75, 138
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 10, 34
BstKTI GATC 4 cut(s) 10, 16, 190, 316
BstMAI GTCTC 2 cut(s) 401, 437
BstMBI GATC 4 cut(s) 7, 13, 187, 313
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 10, 34
BveI ACCTGC 1 cut(s) 510
Csp6I GTAC 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 3 cut(s) 244, 278, 317
CviJI RGCY 6 cut(s) 182, 193, 293, 306, 385, 425
CviKI_1 RGCY 6 cut(s) 182, 193, 293, 306, 385, 425
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 2 cut(s) 75, 138
DpnI GATC 4 cut(s) 9, 15, 189, 315
DpnII GATC 4 cut(s) 7, 13, 187, 313
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Eco147I AGGCCT 1 cut(s) 306
EcoRI GAATTC 2 cut(s) 360, 516
FaeI CATG 3 cut(s) 247, 281, 320
FaiI YATR 8 cut(s) 185, 197, 245, 279, 318, 326, 371, 512
FatI CATG 3 cut(s) 243, 277, 316
FbaI TGATCA 2 cut(s) 7, 313
FblI GTMKAC 1 cut(s) 493
FokI GGATG 2 cut(s) 17, 41
FspBI CTAG 3 cut(s) 386, 429, 497
HaeIII GGCC 1 cut(s) 306
Hin1II CATG 3 cut(s) 247, 281, 320
HinfI GANTC 2 cut(s) 65, 140
Hpy166II GTNNAC 4 cut(s) 103, 144, 238, 494
Hpy188I TCNGA 2 cut(s) 297, 442
Hpy188III TCNNGA 3 cut(s) 11, 287, 429
Hpy8I GTNNAC 4 cut(s) 103, 144, 238, 494
HpyAV CCTTC 2 cut(s) 476, 535
HpyCH4III ACNGT 3 cut(s) 160, 229, 334
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 2 cut(s) 75, 138
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 3 cut(s) 247, 281, 320
Ksp22I TGATCA 2 cut(s) 7, 313
Kzo9I GATC 4 cut(s) 7, 13, 187, 313
LguI GCTCTTC 1 cut(s) 415
LpnPI CCDG 3 cut(s) 55, 360, 515
LweI GCATC 2 cut(s) 82, 399
MaeI CTAG 3 cut(s) 386, 429, 497
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 2 cut(s) 220, 328
MalI GATC 4 cut(s) 9, 15, 189, 315
MboI GATC 4 cut(s) 7, 13, 187, 313
MboII GAAGA 4 cut(s) 38, 74, 432, 465
MfeI CAATTG 1 cut(s) 57
MflI RGATCY 1 cut(s) 13
MluCI AATT 4 cut(s) 57, 360, 395, 516
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 2 cut(s) 193, 409
MroXI GAANNNNTTC 1 cut(s) 424
MseI TTAA 3 cut(s) 18, 206, 336
MunI CAATTG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 249
NdeII GATC 4 cut(s) 7, 13, 187, 313
NlaIII CATG 3 cut(s) 247, 281, 320
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 281
PceI AGGCCT 1 cut(s) 306
PciI ACATGT 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 415
PdmI GAANNNNTTC 1 cut(s) 424
PfeI GAWTC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 107
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PscI ACATGT 1 cut(s) 277
Psp1406I AACGTT 1 cut(s) 483
PsuI RGATCY 1 cut(s) 13
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SapI GCTCTTC 1 cut(s) 415
SaqAI TTAA 3 cut(s) 18, 206, 336
Sau3AI GATC 4 cut(s) 7, 13, 187, 313
SchI GAGTC 1 cut(s) 149
SetI ASST 9 cut(s) 130, 195, 222, 295, 387, 427, 486, 504, 527
SfaNI GCATC 2 cut(s) 82, 399
Sse9I AATT 4 cut(s) 57, 360, 395, 516
SseBI AGGCCT 1 cut(s) 306
SspMI CTAG 3 cut(s) 386, 429, 497
StuI AGGCCT 1 cut(s) 306
TaaI ACNGT 3 cut(s) 160, 229, 334
TaiI ACGT 1 cut(s) 486
TaqI TCGA 1 cut(s) 528
TaqII GACCGA 1 cut(s) 272
TasI AATT 4 cut(s) 57, 360, 395, 516
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 3 cut(s) 18, 206, 336
Tru9I TTAA 3 cut(s) 18, 206, 336
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 416
Tth111I GACNNNGTC 1 cut(s) 107
XapI RAATTY 2 cut(s) 360, 516
XbaI TCTAGA 1 cut(s) 428
XceI RCATGY 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 424
XspI CTAG 3 cut(s) 386, 429, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.