Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008857

Physical Location & Seq

Genomic Coordinates Forward (+)

495045 .. 499375

Gene Structure 4331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGAAGACAAGGAAACCCTAATTAAGCATGTAGAACAAGACCCTGCTGAACCTGAACCTGAGGATTACCGAGAAGAGTTCCAGTGCTGTGTTTGCCTGGAACTTCTTTACAAGCCAGTTGTATTAGGATGTGGCCACATTTCGTGTTTCTGGTGCGTCTTCAATTGCATGAATGCTTGTCATGAATCCAATTGTCCAGTTTGTCGACACCCATATAATCATTTCCCTAGAATCTGTAATTTGCTGCACTTCATACTCCAAAAGTTGTATCCGAAAGCTTATCATACAAGGGAAAAGCAAGTGGGAGAAGAAGAGAAGAAAGCTGGCTACTTTTCACCTCAAGTTCAAAATCCGCTAGCAGGACCAGATCCTACTGAGTCAAACATTCCCAGAAATGTTGCACATTCTCCCCCTTGTCCAGAGTCGAAGAACTCTAAAGGTTGTTCTTCTGGGGCTTCACTTGTAAATTCACCAGAAGTGTTAGACCATGAAGCTAATATTGCAAGCTTTCCAACTTCTTCAAAGAATGTTAAACCAACTGAAAATGCAGCAGTCCAAGAGCATTGTTTGTATGGTAATGATCTTGAAAATGGAACTCACAAGGAGATTTCTGTTTCTGATCTACTCTGTGCTGCATGCAAGAATTTGCTCTTTCAACCTGTCGTTCTCAATTGTGGCCATGTATATTGTGAATCTTGTATAAGCATCCCAGAAGATGGAATTTCTAGGTGTCAGATTTGTCAAAGCATGCATCCAAATGGATTTCCAAGTGTGTGCTTAGTTTTAGAGCATTTCTTGGAGGAGCAGTATCCTGAAGCTTATGCACATAGACAAGCATCTTCACTAAAACAAGCTGACAGTCGGTTGAATGTTCGTCAACGTGCCAAACGATCATCATCAACACTTTCTGATGAGTACTTATCCTGCATGTACGGTGGCGGGCCGAAAGTTCACATTGGAATTGGTTGTGACTACTGCGGGATGTCTCCGATTATTGGTGAGAGGTACAGATGTAAAGACTGTGTGGAGAGGATGAGTTTTGACCTATGTGGAGCATGCTACAAGGCCCCTTCCAAGATTTCTGGTCGGTTTAATCAGCAACATAAACCAGAACACAAGCTTGAGAATGTACAGCCAGAGATAATAGACTTCCTTACCTACCAGTCAGATGAAGATGGCTCCGAGGTTCTGGAACACCTAGGAAATATTCCTCCTGTTCCACATCCACAAGAACCAGAAAATGGCTCTAACAATGTGCAGAATGATTCTGCTGCTTTTGTGATGTCAGTTGATACTTCACGAGATCCAGATGATGATTTTAATGATTCCTTACCAGATTTGACTCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

451

Amino Acids

50.27

Weight (kDa)

5.15

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	210 - 244	6.6e-06	RING-type zinc-finger
ZZ	PF00569	321 - 358	1.8e-06	Zinc finger, ZZ type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00570 FvH4_4g00570
malus_domestica	MD04G1005700.v1.1
prunus_persica	Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1
pyrus_communis	pycom420g00860
rosa_chinensis	RchiOBHm_Chr4g0386021
rosa_laevigata	RLG00000010180
rosa_multiflora	Rmu_sc0000472.1_g000019
rosa_roxburghii	Rroxscaffold_5G00333780 Rroxscaffold_5G00338450 Rroxscaffold_5G00338750
rosa_rugosa	Rorug03G0306300 Rorug03G0306400 Rorug03G0306400 Rorug03G0306500
rosa_samantha	Rh4AG010100 Rh4BG007100 Rh4CG010800 Rh4DG008200
rosa_wichuraiana	Rw4G000130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	716, 1241
AccI	GTMKAC	1 cut(s)	205
AciI	CCGC	3 cut(s)	353, 939, 978
AclWI	GGATC	2 cut(s)	362, 1298
AcoI	YGGCCR	2 cut(s)	133, 676
AcsI	RAATTY	3 cut(s)	466, 643, 720
AcuI	CTGAAG	1 cut(s)	834
AfaI	GTAC	4 cut(s)	917, 932, 1007, 1131
AfiI	CCNNNNNNNGG	4 cut(s)	359, 716, 995, 1241
AgsI	TTSAA	6 cut(s)	163, 347, 522, 587, 656, 868
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	7 cut(s)	278, 323, 494, 507, 818, 854, 1120
AluI	AGCT	7 cut(s)	278, 323, 494, 507, 818, 854, 1120
Alw26I	GTCTC	1 cut(s)	990
AlwI	GGATC	2 cut(s)	362, 1298
AoxI	GGCC	4 cut(s)	133, 676, 941, 1065
ApeKI	GCWGC	4 cut(s)	244, 548, 632, 1271
ApoI	RAATTY	3 cut(s)	466, 643, 720
AspA2I	CCTAGG	1 cut(s)	1198
AspS9I	GGNCC	3 cut(s)	362, 941, 1066
AsuHPI	GGTGA	3 cut(s)	327, 462, 1010
AsuNHI	GCTAGC	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	362
AvrII	CCTAGG	1 cut(s)	1198
AxyI	CCTNAGG	1 cut(s)	60
BaeI	ACNNNNGTAYC	2 cut(s)	997, 1030
BalI	TGGCCA	2 cut(s)	135, 678
BauI	CACGAG	1 cut(s)	1299
BbsI	GAAGAC	2 cut(s)	12, 151
BbvI	GCAGC	4 cut(s)	231, 560, 619, 1258
BccI	CCATC	2 cut(s)	710, 1169
BciT130I	CCWGG	1 cut(s)	98
BciVI	GTATCC	2 cut(s)	279, 819
BcoDI	GTCTC	1 cut(s)	990
BfaI	CTAG	4 cut(s)	228, 356, 726, 1199
BfuI	GTATCC	2 cut(s)	279, 819
BisI	GCNGC	4 cut(s)	245, 549, 633, 1272
BlnI	CCTAGG	1 cut(s)	1198
BlsI	GCNGC	4 cut(s)	246, 550, 634, 1273
BmcAI	AGTACT	1 cut(s)	917
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	3 cut(s)	362, 941, 1066
BmiI	GGNNCC	2 cut(s)	1068, 1180
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	3 cut(s)	714, 760, 845
BmtI	GCTAGC	1 cut(s)	359
BpiI	GAAGAC	2 cut(s)	12, 151
BpuEI	CTTGAG	3 cut(s)	324, 1142, 1329
BsaBI	GATNNNNATC	1 cut(s)	895
BsaJI	CCNNGG	2 cut(s)	1182, 1198
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	4 cut(s)	359, 716, 995, 1241
Bse1I	ACTGG	4 cut(s)	82, 116, 197, 1162
Bse21I	CCTNAGG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	895
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	1182, 1198
BseGI	GGATG	6 cut(s)	134, 705, 751, 987, 1038, 1222
BseJI	GATNNNNATC	1 cut(s)	895
BseLI	CCNNNNNNNGG	4 cut(s)	359, 716, 995, 1241
BseMII	CTCAG	2 cut(s)	51, 366
BseNI	ACTGG	4 cut(s)	82, 116, 197, 1162
BseRI	GAGGAG	1 cut(s)	815
BseXI	GCAGC	4 cut(s)	231, 560, 619, 1258
BsgI	GTGCAG	2 cut(s)	230, 1277
BshFI	GGCC	4 cut(s)	135, 678, 943, 1067
BslI	CCNNNNNNNGG	4 cut(s)	359, 716, 995, 1241
BsmAI	GTCTC	1 cut(s)	990
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	4 cut(s)	135, 678, 943, 1067
Bsp1407I	TGTACA	1 cut(s)	1129
Bsp143I	GATC	5 cut(s)	367, 580, 619, 890, 1303
BspACI	CCGC	3 cut(s)	353, 939, 978
BspANI	GGCC	4 cut(s)	135, 678, 943, 1067
BspCNI	CTCAG	2 cut(s)	52, 367
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	1068, 1180
BspOI	GCTAGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	362, 1298
BsrGI	TGTACA	1 cut(s)	1129
BsrI	ACTGG	4 cut(s)	82, 116, 197, 1162
BssECI	CCNNGG	2 cut(s)	1182, 1198
BssMI	GATC	5 cut(s)	367, 580, 619, 890, 1303
BssSI	CACGAG	1 cut(s)	1299
BssT1I	CCWWGG	1 cut(s)	1198
Bst2BI	CACGAG	1 cut(s)	1299
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	3 cut(s)	860, 935, 1022
Bst6I	CTCTTC	2 cut(s)	69, 306
BstAUI	TGTACA	1 cut(s)	1129
BstC8I	GCNNGC	7 cut(s)	325, 357, 505, 637, 749, 941, 1057
BstDEI	CTNAG	3 cut(s)	60, 375, 778
BstF5I	GGATG	6 cut(s)	134, 705, 751, 987, 1038, 1222
BstKTI	GATC	5 cut(s)	370, 583, 622, 893, 1306
BstMAI	GTCTC	1 cut(s)	990
BstMBI	GATC	5 cut(s)	367, 580, 619, 890, 1303
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 500
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	5 cut(s)	32, 639, 751, 931, 1059
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	4 cut(s)	231, 560, 619, 1258
BstV2I	GAAGAC	2 cut(s)	12, 151
BstX2I	RGATCY	2 cut(s)	367, 1303
BstYI	RGATCY	2 cut(s)	367, 1303
Bsu36I	CCTNAGG	1 cut(s)	60
BsuI	GTATCC	2 cut(s)	279, 819
BsuRI	GGCC	4 cut(s)	135, 678, 943, 1067
BtsCI	GGATG	6 cut(s)	134, 705, 751, 987, 1038, 1222
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	7 cut(s)	325, 357, 505, 637, 749, 941, 1057
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	3 cut(s)	362, 941, 1066
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	4 cut(s)	916, 931, 1006, 1130
CviAII	CATG	9 cut(s)	29, 169, 182, 488, 636, 680, 748, 928, 1056
CviQI	GTAC	4 cut(s)	916, 931, 1006, 1130
DdeI	CTNAG	3 cut(s)	60, 375, 778
DpnI	GATC	5 cut(s)	369, 582, 621, 892, 1305
DpnII	GATC	5 cut(s)	367, 580, 619, 890, 1303
EaeI	YGGCCR	2 cut(s)	133, 676
Eam1104I	CTCTTC	2 cut(s)	69, 306
EarI	CTCTTC	2 cut(s)	69, 306
Eco130I	CCWWGG	1 cut(s)	1198
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	834
Eco81I	CCTNAGG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	1066
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	1198
EcoT22I	ATGCAT	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	1198
FaeI	CATG	9 cut(s)	32, 172, 185, 491, 639, 683, 751, 931, 1059
FatI	CATG	9 cut(s)	28, 168, 181, 487, 635, 679, 747, 927, 1055
FauI	CCCGC	2 cut(s)	932, 971
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	245, 549, 633, 1272
FokI	GGATG	6 cut(s)	141, 692, 738, 994, 1045, 1209
Fsp4HI	GCNGC	4 cut(s)	245, 549, 633, 1272
FspBI	CTAG	4 cut(s)	228, 356, 726, 1199
GluI	GCNGC	4 cut(s)	245, 549, 633, 1272
HaeIII	GGCC	4 cut(s)	135, 678, 943, 1067
HgaI	GACGC	1 cut(s)	145
Hin1II	CATG	9 cut(s)	32, 172, 185, 491, 639, 683, 751, 931, 1059
HincII	GTYRAC	2 cut(s)	206, 878
HindII	GTYRAC	2 cut(s)	206, 878
HindIII	AAGCTT	4 cut(s)	276, 505, 816, 1118
HinfI	GANTC	8 cut(s)	185, 231, 377, 422, 692, 1265, 1325, 1342
HphI	GGTGA	3 cut(s)	327, 462, 1010
Hpy166II	GTNNAC	3 cut(s)	206, 878, 952
Hpy188I	TCNGA	7 cut(s)	273, 619, 735, 910, 990, 1168, 1183
Hpy188III	TCNNGA	8 cut(s)	182, 419, 584, 812, 1190, 1299, 1307, 1346
Hpy8I	GTNNAC	3 cut(s)	206, 878, 952
HpyAV	CCTTC	1 cut(s)	1080
HpyCH4III	ACNGT	3 cut(s)	860, 935, 1022
HpyCH4IV	ACGT	1 cut(s)	880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 500
HpyF3I	CTNAG	3 cut(s)	60, 375, 778
HpySE526I	ACGT	1 cut(s)	880
Hsp92II	CATG	9 cut(s)	32, 172, 185, 491, 639, 683, 751, 931, 1059
Kzo9I	GATC	5 cut(s)	367, 580, 619, 890, 1303
LmnI	GCTCC	3 cut(s)	802, 1052, 1184
Lsp1109I	GCAGC	4 cut(s)	231, 560, 619, 1258
LweI	GCATC	3 cut(s)	714, 760, 845
MaeI	CTAG	4 cut(s)	228, 356, 726, 1199
MaeII	ACGT	1 cut(s)	880
MaeIII	GTNAC	1 cut(s)	968
MalI	GATC	5 cut(s)	369, 582, 621, 892, 1305
MboI	GATC	5 cut(s)	367, 580, 619, 890, 1303
MfeI	CAATTG	3 cut(s)	163, 190, 670
MflI	RGATCY	2 cut(s)	367, 1303
MlsI	TGGCCA	2 cut(s)	135, 678
MluCI	AATT	9 cut(s)	21, 163, 190, 238, 466, 643, 670, 720, 960
MluNI	TGGCCA	2 cut(s)	135, 678
MlyI	GAGTC	3 cut(s)	386, 431, 1336
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	7 cut(s)	55, 348, 793, 996, 1023, 1177, 1221
Mox20I	TGGCCA	2 cut(s)	135, 678
Mph1103I	ATGCAT	1 cut(s)	753
MscI	TGGCCA	2 cut(s)	135, 678
MseI	TTAA	4 cut(s)	24, 531, 1092, 1320
MslI	CAYNNNNRTG	1 cut(s)	756
Msp20I	TGGCCA	2 cut(s)	135, 678
MspR9I	CCNGG	1 cut(s)	98
MunI	CAATTG	3 cut(s)	163, 190, 670
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	93, 500
NdeII	GATC	5 cut(s)	367, 580, 619, 890, 1303
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	9 cut(s)	32, 172, 185, 491, 639, 683, 751, 931, 1059
NlaIV	GGNNCC	2 cut(s)	1068, 1180
NmuCI	GTSAC	1 cut(s)	968
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	5 cut(s)	32, 639, 751, 931, 1059
PaeI	GCATGC	3 cut(s)	639, 751, 1059
PagI	TCATGA	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	886
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	5 cut(s)	185, 231, 692, 1265, 1325
PflMI	CCANNNNNTGG	2 cut(s)	716, 1241
PkrI	GCNGC	4 cut(s)	246, 550, 634, 1273
PleI	GAGTC	3 cut(s)	385, 430, 1336
PpsI	GAGTC	3 cut(s)	385, 430, 1336
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	1068, 1180
PspPI	GGNCC	3 cut(s)	362, 941, 1066
PsuI	RGATCY	2 cut(s)	367, 1303
RsaI	GTAC	4 cut(s)	917, 932, 1007, 1131
RsaNI	GTAC	4 cut(s)	916, 931, 1006, 1130
RseI	CAYNNNNRTG	1 cut(s)	756
SalI	GTCGAC	1 cut(s)	204
SaqAI	TTAA	4 cut(s)	24, 531, 1092, 1320
SatI	GCNGC	4 cut(s)	245, 549, 633, 1272
Sau3AI	GATC	5 cut(s)	367, 580, 619, 890, 1303
Sau96I	GGNCC	3 cut(s)	362, 941, 1066
ScaI	AGTACT	1 cut(s)	917
SchI	GAGTC	3 cut(s)	386, 431, 1336
ScrFI	CCNGG	1 cut(s)	98
SfaNI	GCATC	3 cut(s)	714, 760, 845
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	3 cut(s)	339, 1121, 1344
SmoI	CTYRAG	3 cut(s)	339, 1121, 1344
SphI	GCATGC	3 cut(s)	639, 751, 1059
Sse9I	AATT	9 cut(s)	21, 163, 190, 238, 466, 643, 670, 720, 960
SsiI	CCGC	3 cut(s)	353, 939, 978
SspI	AATATT	2 cut(s)	499, 1207
SspMI	CTAG	4 cut(s)	228, 356, 726, 1199
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	1198
TaaI	ACNGT	3 cut(s)	860, 935, 1022
TaiI	ACGT	1 cut(s)	883
TaqI	TCGA	2 cut(s)	205, 425
TasI	AATT	9 cut(s)	21, 163, 190, 238, 466, 643, 670, 720, 960
TatI	WGTACW	2 cut(s)	915, 1129
TfiI	GAWTC	5 cut(s)	185, 231, 692, 1265, 1325
Tru1I	TTAA	4 cut(s)	24, 531, 1092, 1320
Tru9I	TTAA	4 cut(s)	24, 531, 1092, 1320
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	968
TseI	GCWGC	4 cut(s)	244, 548, 632, 1271
Tsp45I	GTSAC	1 cut(s)	968
TspDTI	ATGAA	5 cut(s)	185, 198, 241, 504, 1185
TspRI	CASTG	1 cut(s)	89
Van91I	CCANNNNNTGG	2 cut(s)	716, 1241
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	3 cut(s)	466, 643, 720
XceI	RCATGY	5 cut(s)	32, 639, 751, 931, 1059
XmaJI	CCTAGG	1 cut(s)	1198
XmiI	GTMKAC	1 cut(s)	205
XspI	CTAG	4 cut(s)	228, 356, 726, 1199
ZrmI	AGTACT	1 cut(s)	917
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.