Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008857

Physical Location & Seq

Genomic Coordinates Forward (+)

1843479 .. 1847888

Gene Structure 4410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG010800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAGTGCTTGTCATGAATCCAATTGTCCAGTTTGTCGATTCCCATATAATCATTTCCCTAGTATCTGTAATTTGCTGCATTTCATACTCCAAAAGTTGTATCCGACAGCATATCAGAGAAGGGAAAAGCAAGTGGGAGAAGAAGAGAAGGAAGCTGGCTTCTTTTCACCTGAAGTTCAAAATCCGCTAGCCGGACCACAGCCTACTGAGTCAAATATTCCTGGAAATGTTGCACATTCTCCCCCTTGTCCAAAGTCAAAGAACTCTGAAAGTTGTTCTTCTGGGGTAGGAGAATCTCCTTCACTTGTAAATTCACCAGAAATGTTAGACCATGAAGCTAATAGTTCAAGCGTTTCAATATCTTCAATGAATGTTGAACAAACTGAAAATGCAGCCATCCAAGAGCATTGTTTGCATGGTAATGATCTTGAAAATGGAACTCACAAGGAGATTTCTGTTTCTGATCTACTATGTGCTGCATGCAAGAACTTGCTCTATCAACCTGTTGTTCTCAATTGTGGCCATGTATATTGTAAATCTTGTATAAGCATCCCAGAAGATGGAATTTCTAGGTGTCAGGTTTGTCAAAGCATGCATCCAAATGGATTTCCAAGTGTGTGCTTAGTTTTAGAGCATTTCTTGGAGGAGCAGTACCCTGAAGCTTATGCACAGAGACGAGCATCTTCACTAAAACAAGCTGACAGTCAGTTGAATGTTCATCAACGTGCGGGCCGATCATCATCAACACTTTCTGATGAGTACTTATCCTGCTGGAATGGTGTCGGGCCAAAAGTTCACTTTGGAATTGGTTGTGACTACTGTGGGATGTCTCCAATTATTGGAGAGAGGTACAGATGTAAAGATTGTGTGGAGCTAATGGGTTTTGACCTATGTGGAGCATGCTATAAAGCCCCTTTTAAGATGTCTGGTCGATTCAATCAGCAACATAAACCAGAACACAAGCTTGAGAGTGTACAGCCAGAGATGATAGACATCGTTCCCTACCAGTCAGATGAAGATGGCGCGGAGGTTATTGAACACCTAGGAAATATCCCTCCTGTTCCCATTCCACAAGAACCAGAAAATGGCTCTAACAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

367

Amino Acids

40.46

Weight (kDa)

5.23

Isoelectric Point (pI)

67.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	158 - 192	7.1e-06	RING-type zinc-finger
zf-C3HC4	PF00097	158 - 195	8.2e-06	Zinc finger, C3HC4 type (RING finger)
ZZ	PF00569	266 - 304	4.8e-07	Zinc finger, ZZ type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00570 FvH4_4g00570
malus_domestica	MD04G1005700.v1.1
prunus_persica	Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1
pyrus_communis	pycom420g00860
rosa_chinensis	RchiOBHm_Chr4g0386021
rosa_laevigata	RLG00000010180
rosa_multiflora	Rmu_sc0000472.1_g000019
rosa_roxburghii	Rroxscaffold_5G00333780 Rroxscaffold_5G00338450 Rroxscaffold_5G00338750
rosa_rugosa	Rorug03G0306300 Rorug03G0306400 Rorug03G0306400 Rorug03G0306500
rosa_samantha	Rh4AG010100 Rh4BG007100 Rh4CG010800 Rh4DG008200
rosa_wichuraiana	Rw4G000130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	560, 839, 1085
AccII	CGCG	1 cut(s)	1025
AciI	CCGC	3 cut(s)	185, 728, 1025
AcoI	YGGCCR	1 cut(s)	520
AcsI	RAATTY	2 cut(s)	310, 564
AcuI	CTGAAG	2 cut(s)	192, 678
AfaI	GTAC	4 cut(s)	653, 761, 851, 975
AfiI	CCNNNNNNNGG	4 cut(s)	191, 560, 839, 1085
AgsI	TTSAA	9 cut(s)	179, 348, 357, 366, 377, 431, 712, 937, 1037
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	6 cut(s)	155, 338, 662, 698, 874, 964
AluI	AGCT	6 cut(s)	155, 338, 662, 698, 874, 964
Alw26I	GTCTC	2 cut(s)	667, 834
AoxI	GGCC	3 cut(s)	520, 730, 785
ApeKI	GCWGC	3 cut(s)	76, 392, 476
ApoI	RAATTY	2 cut(s)	310, 564
AspA2I	CCTAGG	1 cut(s)	1042
AspLEI	GCGC	1 cut(s)	1025
AspS9I	GGNCC	3 cut(s)	194, 730, 785
AsuHPI	GGTGA	2 cut(s)	159, 306
AsuNHI	GCTAGC	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	194
AvrII	CCTAGG	1 cut(s)	1042
BaeI	ACNNNNGTAYC	2 cut(s)	841, 874
BalI	TGGCCA	1 cut(s)	522
BbvI	GCAGC	3 cut(s)	63, 404, 463
BccI	CCATC	3 cut(s)	404, 554, 1013
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	667, 834
BfaI	CTAG	4 cut(s)	60, 188, 570, 1043
BfuI	GTATCC	1 cut(s)	111
BisI	GCNGC	3 cut(s)	77, 393, 477
BlnI	CCTAGG	1 cut(s)	1042
BlsI	GCNGC	3 cut(s)	78, 394, 478
BmcAI	AGTACT	1 cut(s)	761
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	194, 730, 785
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	3 cut(s)	558, 604, 689
BmtI	GCTAGC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	986
BsaBI	GATNNNNATC	2 cut(s)	739, 992
BsaJI	CCNNGG	1 cut(s)	1042
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 560, 839, 1085
Bse1I	ACTGG	2 cut(s)	29, 1006
Bse8I	GATNNNNATC	2 cut(s)	739, 992
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	1042
BseGI	GGATG	4 cut(s)	396, 549, 595, 831
BseJI	GATNNNNATC	2 cut(s)	739, 992
BseLI	CCNNNNNNNGG	4 cut(s)	191, 560, 839, 1085
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	29, 1006
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	3 cut(s)	63, 404, 463
Bsh1236I	CGCG	1 cut(s)	1025
BshFI	GGCC	3 cut(s)	522, 732, 787
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	4 cut(s)	191, 560, 839, 1085
BsmAI	GTCTC	2 cut(s)	667, 834
BsmBI	CGTCTC	1 cut(s)	667
BsnI	GGCC	3 cut(s)	522, 732, 787
Bsp1407I	TGTACA	1 cut(s)	973
Bsp143I	GATC	3 cut(s)	424, 463, 734
BspACI	CCGC	3 cut(s)	185, 728, 1025
BspANI	GGCC	3 cut(s)	522, 732, 787
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	1025
BspHI	TCATGA	1 cut(s)	13
BspOI	GCTAGC	1 cut(s)	191
BsrGI	TGTACA	1 cut(s)	973
BsrI	ACTGG	2 cut(s)	29, 1006
BssECI	CCNNGG	1 cut(s)	1042
BssMI	GATC	3 cut(s)	424, 463, 734
BssT1I	CCWWGG	1 cut(s)	1042
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	704, 821
Bst6I	CTCTTC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstAUI	TGTACA	1 cut(s)	973
BstC8I	GCNNGC	6 cut(s)	157, 189, 481, 593, 730, 901
BstDEI	CTNAG	2 cut(s)	207, 622
BstF5I	GGATG	4 cut(s)	396, 549, 595, 831
BstFNI	CGCG	1 cut(s)	1025
BstHHI	GCGC	1 cut(s)	1025
BstKTI	GATC	3 cut(s)	427, 466, 737
BstMAI	GTCTC	2 cut(s)	667, 834
BstMBI	GATC	3 cut(s)	424, 463, 734
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	3 cut(s)	483, 595, 903
BstSCI	CCNGG	1 cut(s)	220
BstUI	CGCG	1 cut(s)	1025
BstV1I	GCAGC	3 cut(s)	63, 404, 463
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	522, 732, 787
BtsCI	GGATG	4 cut(s)	396, 549, 595, 831
Cac8I	GCNNGC	6 cut(s)	157, 189, 481, 593, 730, 901
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	1 cut(s)	1025
Cfr13I	GGNCC	3 cut(s)	194, 730, 785
Csp6I	GTAC	4 cut(s)	652, 760, 850, 974
CviAII	CATG	7 cut(s)	14, 332, 416, 480, 524, 592, 900
CviQI	GTAC	4 cut(s)	652, 760, 850, 974
DdeI	CTNAG	2 cut(s)	207, 622
DpnI	GATC	3 cut(s)	426, 465, 736
DpnII	GATC	3 cut(s)	424, 463, 734
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	1042
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	2 cut(s)	192, 678
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	1042
EcoT22I	ATGCAT	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	1042
Esp3I	CGTCTC	1 cut(s)	667
FaeI	CATG	7 cut(s)	17, 335, 419, 483, 527, 595, 903
FalI	AAGNNNNNCTT	2 cut(s)	262, 294
FatI	CATG	7 cut(s)	13, 331, 415, 479, 523, 591, 899
FauI	CCCGC	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	77, 393, 477
FokI	GGATG	4 cut(s)	383, 536, 582, 838
Fsp4HI	GCNGC	3 cut(s)	77, 393, 477
FspBI	CTAG	4 cut(s)	60, 188, 570, 1043
GlaI	GCGC	1 cut(s)	1024
GluI	GCNGC	3 cut(s)	77, 393, 477
HaeIII	GGCC	3 cut(s)	522, 732, 787
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	1025
Hin1II	CATG	7 cut(s)	17, 335, 419, 483, 527, 595, 903
Hin6I	GCGC	1 cut(s)	1023
HinP1I	GCGC	1 cut(s)	1023
HindIII	AAGCTT	2 cut(s)	660, 962
HinfI	GANTC	5 cut(s)	17, 39, 209, 293, 933
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	2 cut(s)	159, 306
Hpy166II	GTNNAC	2 cut(s)	796, 974
Hpy188I	TCNGA	6 cut(s)	105, 117, 268, 463, 754, 1012
Hpy188III	TCNNGA	2 cut(s)	14, 428
Hpy8I	GTNNAC	2 cut(s)	796, 974
HpyAV	CCTTC	3 cut(s)	114, 142, 309
HpyCH4III	ACNGT	2 cut(s)	704, 821
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	8 cut(s)	79, 233, 392, 415, 479, 483, 595, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	2 cut(s)	207, 622
HpySE526I	ACGT	1 cut(s)	724
Hsp92II	CATG	7 cut(s)	17, 335, 419, 483, 527, 595, 903
HspAI	GCGC	1 cut(s)	1023
Kzo9I	GATC	3 cut(s)	424, 463, 734
LmnI	GCTCC	3 cut(s)	646, 871, 896
Lsp1109I	GCAGC	3 cut(s)	63, 404, 463
LweI	GCATC	3 cut(s)	558, 604, 689
MaeI	CTAG	4 cut(s)	60, 188, 570, 1043
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	1 cut(s)	812
MalI	GATC	3 cut(s)	426, 465, 736
MboI	GATC	3 cut(s)	424, 463, 734
MboII	GAAGA	7 cut(s)	152, 155, 270, 354, 569, 675, 1028
MfeI	CAATTG	2 cut(s)	22, 514
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	7 cut(s)	22, 70, 310, 514, 564, 804, 834
MluNI	TGGCCA	1 cut(s)	522
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	4 cut(s)	637, 840, 1021, 1065
Mox20I	TGGCCA	1 cut(s)	522
Mph1103I	ATGCAT	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	1 cut(s)	918
MslI	CAYNNNNRTG	3 cut(s)	420, 600, 723
Msp20I	TGGCCA	1 cut(s)	522
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	2 cut(s)	22, 514
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	1025
MwoI	GCNNNNNNNGC	1 cut(s)	412
NdeII	GATC	3 cut(s)	424, 463, 734
NheI	GCTAGC	1 cut(s)	187
NlaIII	CATG	7 cut(s)	17, 335, 419, 483, 527, 595, 903
NmuCI	GTSAC	1 cut(s)	812
NsiI	ATGCAT	1 cut(s)	597
NspI	RCATGY	3 cut(s)	483, 595, 903
PaeI	GCATGC	3 cut(s)	483, 595, 903
PagI	TCATGA	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	730
PfeI	GAWTC	4 cut(s)	17, 39, 293, 933
PflMI	CCANNNNNTGG	3 cut(s)	560, 839, 1085
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	3 cut(s)	78, 394, 478
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspPI	GGNCC	3 cut(s)	194, 730, 785
RsaI	GTAC	4 cut(s)	653, 761, 851, 975
RsaNI	GTAC	4 cut(s)	652, 760, 850, 974
RseI	CAYNNNNRTG	3 cut(s)	420, 600, 723
SaqAI	TTAA	1 cut(s)	918
SatI	GCNGC	3 cut(s)	77, 393, 477
Sau3AI	GATC	3 cut(s)	424, 463, 734
Sau96I	GGNCC	3 cut(s)	194, 730, 785
ScaI	AGTACT	1 cut(s)	761
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	222
SfaNI	GCATC	3 cut(s)	558, 604, 689
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	3 cut(s)	420, 600, 723
SmlI	CTYRAG	1 cut(s)	965
SmoI	CTYRAG	1 cut(s)	965
SphI	GCATGC	3 cut(s)	483, 595, 903
Sse9I	AATT	7 cut(s)	22, 70, 310, 514, 564, 804, 834
SsiI	CCGC	3 cut(s)	185, 728, 1025
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	4 cut(s)	60, 188, 570, 1043
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	1042
TaaI	ACNGT	2 cut(s)	704, 821
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	2 cut(s)	37, 931
TasI	AATT	7 cut(s)	22, 70, 310, 514, 564, 804, 834
TatI	WGTACW	2 cut(s)	759, 973
TfiI	GAWTC	4 cut(s)	17, 39, 293, 933
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	3 cut(s)	76, 392, 476
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	6 cut(s)	30, 73, 348, 383, 707, 1029
Van91I	CCANNNNNTGG	3 cut(s)	560, 839, 1085
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	310, 564
XceI	RCATGY	3 cut(s)	483, 595, 903
XmaJI	CCTAGG	1 cut(s)	1042
XspI	CTAG	4 cut(s)	60, 188, 570, 1043
ZrmI	AGTACT	1 cut(s)	761
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.