Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008857

Physical Location & Seq

Genomic Coordinates Reverse (-)

63924947 .. 63928698

Gene Structure 3752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010180

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGAAAACAAGGAAACCTTAATAAAACAAGAACAAGACCTTGAACCTGAGGATTTCCCTGAAGAGTTCCAGTGCTGTGTTTGCCTGGATCTTCTTTACAAGCCAGTTGTATTAGGATGTGGCCACATTTCATGTTTCTGGTGCGTCTTCAATTCCATGAGTGCTTGTCATGAATCCAATTGTCCAGTTTGTCGATTCCCATATAATCATTTCCCTAGTATCTGTAATTTGCTGCATTTCATACTCCAAAAGTTGTATCCGACAGCATATCAGAGAAGGGAAAAGCAAGTGGGAGAAGAAGAGAAGGAAGCTGGCTTCTTTTCACCTGAAGTTCAAAATCCGCTAGCTGGACCACAGCCTACTGAGTCAAATATTCCTGGAAATGTTGCACATTCTCCCCCTTGTGCAAAGTCAAAGAACTCTGAAAGTTGTTCTTCTGGGGTAGGAGAATCTCCTTCATTTGTAAATTCACAAGAAATGTTAGACCATGAAGCTAATAGTTCAAGCGTTTCAATATCTTCAAAGAATGTTGAACGAACTGAAAATGCAGCCATCCAAGAGCATTGTTTGCATGGTAATGATCTTGAAAATGGAACTCACAAGGAGATTTCTGTTTCTGATCTACTATGTGCTGCATGCAAGAACTTGCTCTATCAACCTGTTGTTCTCAATTGTGGCCATGTATATTGTAAATCTTGTATAAGCATCCCAGAAGATGGAATTTCTAGGTGTCAGGTTTGTCAAAGCATGCATCCAAATGGATTTCCAAGTGTGTGCTTAGTTTTAGAGCATTTCTTGGAGGAGCAGTACCCTGAAGCTTATGCACAGAGACAAGCATCTTCACTAAAACAAGCTGACAGTCAGTTGAATGTTCGTCAACATGTGGGCCGATCATCATCAACACTTTTTGATGAGTACTTATCCTGCTTGTATGGTGTCGGGCCAAAAGTTCACTTTGGAATTGGTTGTGACTACTGCGGGATGTCTCCAATTATTGGAGAGAGGTACAGATGTAAAGATTGTGTGGAGCTAATGGGTTTTGACCTATGTGGAGCATGCTATAAAGCCCCTTTTAAAATGTCTGGTAGATTCAATCAGCAACATAAACCAGAACACAAGCTTGAGATTGTACAGCCAGAGATGATAGATATCGTTCCCTACCAGTCAGATGAAGATGGCGCGGAGGTTATGGAACACCTAGGAAATGTCCCTCCTGTTCCCATTCCACAAGAACCAGAAAATGGCTCTAACAATCTGCAAAATGGTTCTGCTGCTTTTGTGATGTCAGTTGATACTTCACGAGATCCAGATGATGATTTTAATGATTGTTTACCAGATTTGACCCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

451

Amino Acids

50.03

Weight (kDa)

4.81

Isoelectric Point (pI)

61.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	210 - 244	9.3e-06	RING-type zinc-finger
ZZ	PF00569	318 - 356	6.1e-07	Zinc finger, ZZ type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00570 FvH4_4g00570
malus_domestica	MD04G1005700.v1.1
prunus_persica	Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1
pyrus_communis	pycom420g00860
rosa_chinensis	RchiOBHm_Chr4g0386021
rosa_laevigata	RLG00000010180
rosa_multiflora	Rmu_sc0000472.1_g000019
rosa_roxburghii	Rroxscaffold_5G00333780 Rroxscaffold_5G00338450 Rroxscaffold_5G00338750
rosa_rugosa	Rorug03G0306300 Rorug03G0306400 Rorug03G0306400 Rorug03G0306500
rosa_samantha	Rh4AG010100 Rh4BG007100 Rh4CG010800 Rh4DG008200
rosa_wichuraiana	Rw4G000130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	716, 995, 1241
AccII	CGCG	1 cut(s)	1181
AciI	CCGC	3 cut(s)	341, 978, 1181
AclWI	GGATC	2 cut(s)	96, 1298
AcoI	YGGCCR	2 cut(s)	121, 676
AcsI	RAATTY	2 cut(s)	466, 720
AcuI	CTGAAG	3 cut(s)	81, 348, 834
AfaI	GTAC	4 cut(s)	809, 917, 1007, 1131
AfiI	CCNNNNNNNGG	4 cut(s)	347, 716, 995, 1241
AflIII	ACRYGT	1 cut(s)	880
AjnI	CCWGG	2 cut(s)	84, 376
AluBI	AGCT	7 cut(s)	311, 347, 494, 818, 854, 1030, 1120
AluI	AGCT	7 cut(s)	311, 347, 494, 818, 854, 1030, 1120
Alw26I	GTCTC	2 cut(s)	823, 990
AlwI	GGATC	2 cut(s)	96, 1298
AoxI	GGCC	4 cut(s)	121, 676, 886, 941
ApeKI	GCWGC	4 cut(s)	232, 548, 632, 1271
ApoI	RAATTY	2 cut(s)	466, 720
AspA2I	CCTAGG	1 cut(s)	1198
AspLEI	GCGC	1 cut(s)	1181
AspS9I	GGNCC	3 cut(s)	350, 886, 941
AsuHPI	GGTGA	1 cut(s)	315
AsuNHI	GCTAGC	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	350
AvrII	CCTAGG	1 cut(s)	1198
AxyI	CCTNAGG	1 cut(s)	48
BaeI	ACNNNNGTAYC	2 cut(s)	997, 1030
BalI	TGGCCA	2 cut(s)	123, 678
BauI	CACGAG	1 cut(s)	1299
BbsI	GAAGAC	1 cut(s)	139
BbvI	GCAGC	4 cut(s)	219, 560, 619, 1258
BccI	CCATC	3 cut(s)	560, 710, 1169
BciT130I	CCWGG	2 cut(s)	86, 378
BciVI	GTATCC	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	823, 990
BfaI	CTAG	4 cut(s)	216, 344, 726, 1199
BfuI	GTATCC	1 cut(s)	267
BisI	GCNGC	4 cut(s)	233, 549, 633, 1272
BlnI	CCTAGG	1 cut(s)	1198
BlsI	GCNGC	4 cut(s)	234, 550, 634, 1273
BmcAI	AGTACT	1 cut(s)	917
Bme1390I	CCNGG	2 cut(s)	86, 378
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	350, 886, 941
BmrFI	CCNGG	2 cut(s)	86, 378
BmsI	GCATC	3 cut(s)	714, 760, 845
BmtI	GCTAGC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	1142
BsaBI	GATNNNNATC	2 cut(s)	895, 1148
BsaJI	CCNNGG	1 cut(s)	1198
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 716, 995, 1241
Bse1I	ACTGG	4 cut(s)	70, 104, 185, 1162
Bse21I	CCTNAGG	1 cut(s)	48
Bse8I	GATNNNNATC	2 cut(s)	895, 1148
BseBI	CCWGG	2 cut(s)	86, 378
BseDI	CCNNGG	1 cut(s)	1198
BseGI	GGATG	5 cut(s)	122, 552, 705, 751, 987
BseJI	GATNNNNATC	2 cut(s)	895, 1148
BseLI	CCNNNNNNNGG	4 cut(s)	347, 716, 995, 1241
BseMII	CTCAG	2 cut(s)	39, 354
BseNI	ACTGG	4 cut(s)	70, 104, 185, 1162
BseRI	GAGGAG	1 cut(s)	815
BseXI	GCAGC	4 cut(s)	219, 560, 619, 1258
Bsh1236I	CGCG	1 cut(s)	1181
BshFI	GGCC	4 cut(s)	123, 678, 888, 943
BslFI	GGGAC	1 cut(s)	1193
BslI	CCNNNNNNNGG	4 cut(s)	347, 716, 995, 1241
BsmAI	GTCTC	2 cut(s)	823, 990
BsmFI	GGGAC	1 cut(s)	1193
BsnI	GGCC	4 cut(s)	123, 678, 888, 943
Bsp1407I	TGTACA	1 cut(s)	1129
Bsp143I	GATC	5 cut(s)	88, 580, 619, 890, 1303
BspACI	CCGC	3 cut(s)	341, 978, 1181
BspANI	GGCC	4 cut(s)	123, 678, 888, 943
BspCNI	CTCAG	2 cut(s)	40, 355
BspFNI	CGCG	1 cut(s)	1181
BspHI	TCATGA	1 cut(s)	169
BspOI	GCTAGC	1 cut(s)	347
BspPI	GGATC	2 cut(s)	96, 1298
BsrGI	TGTACA	1 cut(s)	1129
BsrI	ACTGG	4 cut(s)	70, 104, 185, 1162
BssECI	CCNNGG	1 cut(s)	1198
BssMI	GATC	5 cut(s)	88, 580, 619, 890, 1303
BssSI	CACGAG	1 cut(s)	1299
BssT1I	CCWWGG	1 cut(s)	1198
Bst2BI	CACGAG	1 cut(s)	1299
Bst2UI	CCWGG	2 cut(s)	86, 378
Bst4CI	ACNGT	1 cut(s)	860
Bst6I	CTCTTC	2 cut(s)	57, 294
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstAUI	TGTACA	1 cut(s)	1129
BstC8I	GCNNGC	5 cut(s)	313, 345, 637, 749, 1057
BstDEI	CTNAG	3 cut(s)	48, 363, 778
BstF5I	GGATG	5 cut(s)	122, 552, 705, 751, 987
BstFNI	CGCG	1 cut(s)	1181
BstHHI	GCGC	1 cut(s)	1181
BstKTI	GATC	5 cut(s)	91, 583, 622, 893, 1306
BstMAI	GTCTC	2 cut(s)	823, 990
BstMBI	GATC	5 cut(s)	88, 580, 619, 890, 1303
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 568
BstNI	CCWGG	2 cut(s)	86, 378
BstNSI	RCATGY	4 cut(s)	639, 751, 884, 1059
BstSCI	CCNGG	2 cut(s)	84, 376
BstUI	CGCG	1 cut(s)	1181
BstV1I	GCAGC	4 cut(s)	219, 560, 619, 1258
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	88, 1303
BstYI	RGATCY	2 cut(s)	88, 1303
Bsu36I	CCTNAGG	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	4 cut(s)	123, 678, 888, 943
BtsCI	GGATG	5 cut(s)	122, 552, 705, 751, 987
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	5 cut(s)	313, 345, 637, 749, 1057
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	1 cut(s)	1181
Cfr13I	GGNCC	3 cut(s)	350, 886, 941
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	4 cut(s)	808, 916, 1006, 1130
CviQI	GTAC	4 cut(s)	808, 916, 1006, 1130
DdeI	CTNAG	3 cut(s)	48, 363, 778
DpnI	GATC	5 cut(s)	90, 582, 621, 892, 1305
DpnII	GATC	5 cut(s)	88, 580, 619, 890, 1303
DraI	TTTAAA	1 cut(s)	1075
EaeI	YGGCCR	2 cut(s)	121, 676
Eam1104I	CTCTTC	2 cut(s)	57, 294
EarI	CTCTTC	2 cut(s)	57, 294
Eco130I	CCWWGG	1 cut(s)	1198
Eco32I	GATATC	1 cut(s)	1150
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	3 cut(s)	81, 348, 834
Eco81I	CCTNAGG	1 cut(s)	48
EcoRII	CCWGG	2 cut(s)	84, 376
EcoRV	GATATC	1 cut(s)	1150
EcoT14I	CCWWGG	1 cut(s)	1198
EcoT22I	ATGCAT	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	1198
FalI	AAGNNNNNCTT	3 cut(s)	34, 418, 450
FaqI	GGGAC	1 cut(s)	1193
FauI	CCCGC	1 cut(s)	971
Fnu4HI	GCNGC	4 cut(s)	233, 549, 633, 1272
FokI	GGATG	5 cut(s)	129, 539, 692, 738, 994
Fsp4HI	GCNGC	4 cut(s)	233, 549, 633, 1272
FspBI	CTAG	4 cut(s)	216, 344, 726, 1199
GlaI	GCGC	1 cut(s)	1180
GluI	GCNGC	4 cut(s)	233, 549, 633, 1272
HaeIII	GGCC	4 cut(s)	123, 678, 888, 943
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	1181
Hin6I	GCGC	1 cut(s)	1179
HinP1I	GCGC	1 cut(s)	1179
HincII	GTYRAC	1 cut(s)	878
HindII	GTYRAC	1 cut(s)	878
HindIII	AAGCTT	2 cut(s)	816, 1118
HinfI	GANTC	5 cut(s)	173, 195, 365, 449, 1089
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	3 cut(s)	878, 952, 1331
Hpy188I	TCNGA	5 cut(s)	261, 273, 424, 619, 1168
Hpy188III	TCNNGA	4 cut(s)	170, 584, 1299, 1307
Hpy8I	GTNNAC	3 cut(s)	878, 952, 1331
HpyAV	CCTTC	3 cut(s)	270, 298, 465
HpyCH4III	ACNGT	1 cut(s)	860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 568
HpyF3I	CTNAG	3 cut(s)	48, 363, 778
HspAI	GCGC	1 cut(s)	1179
Kzo9I	GATC	5 cut(s)	88, 580, 619, 890, 1303
LmnI	GCTCC	3 cut(s)	802, 1027, 1052
Lsp1109I	GCAGC	4 cut(s)	219, 560, 619, 1258
LweI	GCATC	3 cut(s)	714, 760, 845
MaeI	CTAG	4 cut(s)	216, 344, 726, 1199
MaeIII	GTNAC	1 cut(s)	968
MalI	GATC	5 cut(s)	90, 582, 621, 892, 1305
MboI	GATC	5 cut(s)	88, 580, 619, 890, 1303
MfeI	CAATTG	2 cut(s)	178, 670
MflI	RGATCY	2 cut(s)	88, 1303
MlsI	TGGCCA	2 cut(s)	123, 678
MluCI	AATT	8 cut(s)	151, 178, 226, 466, 670, 720, 960, 990
MluNI	TGGCCA	2 cut(s)	123, 678
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	5 cut(s)	43, 793, 996, 1177, 1221
Mox20I	TGGCCA	2 cut(s)	123, 678
Mph1103I	ATGCAT	1 cut(s)	753
MscI	TGGCCA	2 cut(s)	123, 678
MseI	TTAA	3 cut(s)	20, 1074, 1320
MslI	CAYNNNNRTG	2 cut(s)	576, 756
Msp20I	TGGCCA	2 cut(s)	123, 678
MspR9I	CCNGG	2 cut(s)	86, 378
MunI	CAATTG	2 cut(s)	178, 670
MvaI	CCWGG	2 cut(s)	86, 378
MvnI	CGCG	1 cut(s)	1181
MwoI	GCNNNNNNNGC	2 cut(s)	81, 568
NdeII	GATC	5 cut(s)	88, 580, 619, 890, 1303
NheI	GCTAGC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	968
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	4 cut(s)	639, 751, 884, 1059
PaeI	GCATGC	3 cut(s)	639, 751, 1059
PagI	TCATGA	1 cut(s)	169
PciI	ACATGT	1 cut(s)	880
PfeI	GAWTC	4 cut(s)	173, 195, 449, 1089
PflMI	CCANNNNNTGG	3 cut(s)	716, 995, 1241
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	234, 550, 634, 1273
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PscI	ACATGT	1 cut(s)	880
Psp6I	CCWGG	2 cut(s)	84, 376
PspGI	CCWGG	2 cut(s)	84, 376
PspPI	GGNCC	3 cut(s)	350, 886, 941
PsuI	RGATCY	2 cut(s)	88, 1303
RsaI	GTAC	4 cut(s)	809, 917, 1007, 1131
RsaNI	GTAC	4 cut(s)	808, 916, 1006, 1130
RseI	CAYNNNNRTG	2 cut(s)	576, 756
SaqAI	TTAA	3 cut(s)	20, 1074, 1320
SatI	GCNGC	4 cut(s)	233, 549, 633, 1272
Sau3AI	GATC	5 cut(s)	88, 580, 619, 890, 1303
Sau96I	GGNCC	3 cut(s)	350, 886, 941
ScaI	AGTACT	1 cut(s)	917
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	86, 378
SfaNI	GCATC	3 cut(s)	714, 760, 845
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	2 cut(s)	576, 756
SmlI	CTYRAG	1 cut(s)	1121
SmoI	CTYRAG	1 cut(s)	1121
SphI	GCATGC	3 cut(s)	639, 751, 1059
Sse9I	AATT	8 cut(s)	151, 178, 226, 466, 670, 720, 960, 990
SsiI	CCGC	3 cut(s)	341, 978, 1181
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	4 cut(s)	216, 344, 726, 1199
StyD4I	CCNGG	2 cut(s)	84, 376
StyI	CCWWGG	1 cut(s)	1198
TaaI	ACNGT	1 cut(s)	860
TaqI	TCGA	1 cut(s)	193
TasI	AATT	8 cut(s)	151, 178, 226, 466, 670, 720, 960, 990
TatI	WGTACW	2 cut(s)	915, 1129
TfiI	GAWTC	4 cut(s)	173, 195, 449, 1089
Tru1I	TTAA	3 cut(s)	20, 1074, 1320
Tru9I	TTAA	3 cut(s)	20, 1074, 1320
TscAI	CASTG	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	968
TseI	GCWGC	4 cut(s)	232, 548, 632, 1271
Tsp45I	GTSAC	1 cut(s)	968
TspDTI	ATGAA	6 cut(s)	120, 186, 229, 447, 504, 1185
TspRI	CASTG	1 cut(s)	77
Van91I	CCANNNNNTGG	3 cut(s)	716, 995, 1241
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	2 cut(s)	466, 720
XceI	RCATGY	4 cut(s)	639, 751, 884, 1059
XmaJI	CCTAGG	1 cut(s)	1198
XspI	CTAG	4 cut(s)	216, 344, 726, 1199
ZrmI	AGTACT	1 cut(s)	917
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.