Rorug03G0306400

Zinc finger, ZZ type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008857
Physical Location & Seq
Reverse (-)
32502162 .. 32503558
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0306400.1

Sequence Viewer

Length: 489 bp
ATGGGGAAGGCACGGACTGTTGGTATAGGCATGGATTACTCTGCAGCGAGCAAATCTGCTTTACGATGGACGGTCGATAATCTGATTGAAGAAGGAGATCGCATCATATTGATCCATGTTGAACAACCCAAAGCTACCAGAAAGCAGCTATTCGAAGATACGGGATCACCTTTGATTCCTTTGGAAGAATTTAACGACTCAAAGCAGTATGGACTCACTAATGACCCAGAGGTTCTCGATATCCTTGATACTGTGTCAAGAACTAAAGGGGCCAAAGTTGCGGCGAAGGTATACTGGGGGGATCCAAGAGAGAAGCTGTGTGATGCAGTGCAAGATCTCAAGCTTAATTCGCTTGTTGTTGGAAGCAGGGGATTAGGCCTTCTAAAAAGGGTGTTGCTTGGCAGTGTGAGTAACTATGTGGTGACTAATGCTTCATGTCCAGTCACAGTCGTGAAGGGTGCATCATCGACTTCATCTACCAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

162

Amino Acids

17.49

Weight (kDa)

8.51

Isoelectric Point (pI)

30.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 152 4e-27 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AciI CCGC 1 cut(s) 281
AclWI GGATC 4 cut(s) 106, 172, 296, 309
AcsI RAATTY 1 cut(s) 188
AgsI TTSAA 2 cut(s) 89, 122
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 4 cut(s) 134, 148, 316, 343
AluI AGCT 4 cut(s) 134, 148, 316, 343
AlwI GGATC 4 cut(s) 106, 172, 296, 309
AoxI GGCC 2 cut(s) 270, 376
ApeKI GCWGC 2 cut(s) 44, 145
ApoI RAATTY 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 159, 433
AsuII TTCGAA 1 cut(s) 153
BamHI GGATCC 1 cut(s) 301
BbvI GCAGC 2 cut(s) 56, 157
BccI CCATC 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 42
BglII AGATCT 1 cut(s) 334
BisI GCNGC 3 cut(s) 45, 146, 282
BlsI GCNGC 3 cut(s) 46, 147, 283
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 2 cut(s) 271, 303
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 3 cut(s) 111, 313, 470
BmuI ACTGGG 1 cut(s) 304
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 299, 440
BseNI ACTGG 2 cut(s) 299, 440
BseXI GCAGC 2 cut(s) 56, 157
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 272, 378
BsiEI CGRYCG 1 cut(s) 75
BsnI GGCC 2 cut(s) 272, 378
Bsp119I TTCGAA 1 cut(s) 153
Bsp143I GATC 5 cut(s) 97, 111, 164, 301, 334
BspACI CCGC 1 cut(s) 281
BspANI GGCC 2 cut(s) 272, 378
BspLI GGNNCC 2 cut(s) 271, 303
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 4 cut(s) 106, 172, 296, 309
BspT104I TTCGAA 1 cut(s) 153
BsrI ACTGG 2 cut(s) 299, 440
BssMI GATC 5 cut(s) 97, 111, 164, 301, 334
BssNAI GTATAC 1 cut(s) 292
Bst1107I GTATAC 1 cut(s) 292
Bst4CI ACNGT 4 cut(s) 19, 73, 253, 448
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 49
BstKTI GATC 5 cut(s) 100, 114, 167, 304, 337
BstMBI GATC 5 cut(s) 97, 111, 164, 301, 334
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 278, 349
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 56, 157
BstX2I RGATCY 2 cut(s) 301, 334
BstYI RGATCY 2 cut(s) 301, 334
BstZ17I GTATAC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 272, 378
BtsI GCAGTG 2 cut(s) 333, 409
BtsIMutI CAGTG 2 cut(s) 333, 409
Cac8I GCNNGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 270
CviAII CATG 3 cut(s) 31, 116, 435
CviJI RGCY 6 cut(s) 134, 148, 272, 316, 343, 378
CviKI_1 RGCY 6 cut(s) 134, 148, 272, 316, 343, 378
DpnI GATC 5 cut(s) 99, 113, 166, 303, 336
DpnII GATC 5 cut(s) 97, 111, 164, 301, 334
Eco147I AGGCCT 1 cut(s) 378
Eco32I GATATC 1 cut(s) 241
EcoRV GATATC 1 cut(s) 241
FaeI CATG 3 cut(s) 34, 119, 438
FaiI YATR 9 cut(s) 26, 32, 107, 117, 210, 292, 417, 436, 487
FatI CATG 3 cut(s) 30, 115, 434
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 45, 146, 282
Fsp4HI GCNGC 3 cut(s) 45, 146, 282
GluI GCNGC 3 cut(s) 45, 146, 282
HaeIII GGCC 2 cut(s) 272, 378
Hin1II CATG 3 cut(s) 34, 119, 438
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 3 cut(s) 175, 197, 213
HphI GGTGA 2 cut(s) 159, 433
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 3 cut(s) 236, 258, 451
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 4 cut(s) 86, 280, 389, 448
HpyCH4III ACNGT 4 cut(s) 19, 73, 253, 448
HpyCH4V TGCA 4 cut(s) 44, 326, 331, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 349
Hsp92II CATG 3 cut(s) 34, 119, 438
Kzo9I GATC 5 cut(s) 97, 111, 164, 301, 334
LpnPI CCDG 5 cut(s) 151, 240, 280, 352, 453
Lsp1109I GCAGC 2 cut(s) 56, 157
LweI GCATC 3 cut(s) 111, 313, 470
MaeIII GTNAC 3 cut(s) 410, 421, 442
MalI GATC 5 cut(s) 99, 113, 166, 303, 336
MboI GATC 5 cut(s) 97, 111, 164, 301, 334
MboII GAAGA 3 cut(s) 101, 167, 197
MflI RGATCY 2 cut(s) 301, 334
MluCI AATT 2 cut(s) 188, 346
MlyI GAGTC 2 cut(s) 191, 207
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 1 cut(s) 223
MseI TTAA 2 cut(s) 192, 345
MslI CAYNNNNRTG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 278, 349
NdeII GATC 5 cut(s) 97, 111, 164, 301, 334
NlaIII CATG 3 cut(s) 34, 119, 438
NlaIV GGNNCC 2 cut(s) 271, 303
NmuCI GTSAC 2 cut(s) 421, 442
NspV TTCGAA 1 cut(s) 153
OliI CACNNNNGTG 1 cut(s) 449
PceI AGGCCT 1 cut(s) 378
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 3 cut(s) 46, 147, 283
PleI GAGTC 2 cut(s) 191, 207
PpsI GAGTC 2 cut(s) 191, 207
PspN4I GGNNCC 2 cut(s) 271, 303
PspPI GGNCC 1 cut(s) 270
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 2 cut(s) 301, 334
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 2 cut(s) 192, 345
SatI GCNGC 3 cut(s) 45, 146, 282
Sau3AI GATC 5 cut(s) 97, 111, 164, 301, 334
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 2 cut(s) 191, 207
SetI ASST 7 cut(s) 136, 150, 172, 234, 291, 318, 345
SfaNI GCATC 3 cut(s) 111, 313, 470
SfcI CTRYAG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 2 cut(s) 188, 346
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 1 cut(s) 281
StuI AGGCCT 1 cut(s) 378
TaaI ACNGT 4 cut(s) 19, 73, 253, 448
TaqI TCGA 4 cut(s) 75, 153, 237, 467
TasI AATT 2 cut(s) 188, 346
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 192, 345
Tru9I TTAA 2 cut(s) 192, 345
TscAI CASTG 2 cut(s) 333, 409
TseFI GTSAC 2 cut(s) 421, 442
TseI GCWGC 2 cut(s) 44, 145
Tsp45I GTSAC 2 cut(s) 421, 442
TspDTI ATGAA 2 cut(s) 423, 462
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 333, 409
XapI RAATTY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.