Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008857

Physical Location & Seq

Genomic Coordinates Reverse (-)

6590881 .. 6593466

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAGTGCTCATTGCAAGTCTCATGATATGGATGTGGCCATATTTCACGTTTCTGGTGCGTCTTCAATTCCAATGAGTGCTTGTCATGAATCCAACTGTCCAGTTTGTCGATTCCCATATAATCATTTCCCTAGTATCTGTAATTTGCTGCATTTCATACTCCAAAAGTTGTATCCGACAGCATATCAGAGAAGGGAAAAGCAAGTGGGAGAAGAAGAGAAGGAAGCTGGCTTCTTTTCACCTGAAGTTCAAAATCCGCTAGCCGGACCACAGCCTACTGGGTCAAATATTCCTGGTCGAGTTGCACATTCTCCCCCTTGTCCAAAGTCAAAGAACTCTAAAAGTTGTTCTTCTTGGGTAGGAGAATCTCCTTCACTTGTAAATTCACCAGAAATGTTAGACCGTGAAGCTAATATTGCAAGTGTTTCAATATCTTCAAAGAATGTTGAACCAACTGAAAATGCAGCCATCCAAGAGCATTGTTTGCATGGTAATGATCTTGAAAATGGAACTCACAAGGAGATTTCTGTTTCTGATCTACTAATACTGCATGCAAGAACTTGCTCTATCAACCTGTTGTTCCCAATTGTGGCCATGGTTTGTCAAAGCATGCATCCAAATGGATTTCCAAGTGTGTGCTTAGTTTTAGAGCATTTCTTGGAGGAGCAGTACCCTGAAGCTTATGCACAGAGACAAGCATCTTCACCAAAACAAGCTGACAGTCAGTGTGAGAATCTTAAAAATTCCATTACTTTGAGCACGGGATCATCAATCAACTCCTGCTTCTTCTTTGGTGCCTGCCCCTCATCCATTCCATCATCCATTCTCACTGGCGCTGCAAGACTCCACACAGTTGGTTTGGCTTTAACCAAACCATGGCTCCCAAACTTTTCGGTTAACGTACTGCAAACCTATCAAATGTCAAGAAAAACACAAATCACTATAAAAAAACTTGGTCTTCAAATCAGCATCACAATCAAAAATACTAATTTCAGAAGCAATGTCATCTCAACCACGCCTAATTGTAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZZ zf-C3HC4_3 zf-C3HC4_4 zf-RING_UBOX

Protein Analysis

344

Amino Acids

37.68

Weight (kDa)

7.55

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008857)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00570 FvH4_4g00570
malus_domestica	MD04G1005700.v1.1
prunus_persica	Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1 Prupe.1G006100_v2.0.a1
pyrus_communis	pycom420g00860
rosa_chinensis	RchiOBHm_Chr4g0386021
rosa_laevigata	RLG00000010180
rosa_multiflora	Rmu_sc0000472.1_g000019
rosa_roxburghii	Rroxscaffold_5G00333780 Rroxscaffold_5G00338450 Rroxscaffold_5G00338750
rosa_rugosa	Rorug03G0306300 Rorug03G0306400 Rorug03G0306400 Rorug03G0306500
rosa_samantha	Rh4AG010100 Rh4BG007100 Rh4CG010800 Rh4DG008200
rosa_wichuraiana	Rw4G000130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	794
AccB7I	CCANNNNNTGG	1 cut(s)	876
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	1 cut(s)	772
AcoI	YGGCCR	2 cut(s)	36, 591
AcsI	RAATTY	2 cut(s)	382, 742
AcuI	CTGAAG	2 cut(s)	264, 696
AfaI	GTAC	3 cut(s)	671, 903, 1031
AfiI	CCNNNNNNNGG	3 cut(s)	263, 589, 876
AgsI	TTSAA	7 cut(s)	66, 251, 429, 438, 449, 503, 962
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	4 cut(s)	227, 410, 680, 716
AluI	AGCT	4 cut(s)	227, 410, 680, 716
Alw21I	GWGCWC	2 cut(s)	10, 761
Alw26I	GTCTC	2 cut(s)	24, 685
AlwI	GGATC	1 cut(s)	772
AoxI	GGCC	2 cut(s)	36, 591
ApeKI	GCWGC	3 cut(s)	148, 464, 836
ApoI	RAATTY	2 cut(s)	382, 742
AspLEI	GCGC	1 cut(s)	836
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	3 cut(s)	231, 378, 696
AsuNHI	GCTAGC	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	266
BalI	TGGCCA	2 cut(s)	38, 593
BanI	GGYRCC	1 cut(s)	794
BbsI	GAAGAC	2 cut(s)	54, 950
Bbv12I	GWGCWC	2 cut(s)	10, 761
BbvI	GCAGC	3 cut(s)	135, 476, 823
BccI	CCATC	2 cut(s)	476, 823
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	183
BcoDI	GTCTC	2 cut(s)	24, 685
BfaI	CTAG	2 cut(s)	132, 260
BfoI	RGCGCY	1 cut(s)	837
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	3 cut(s)	149, 465, 837
BlsI	GCNGC	3 cut(s)	150, 466, 838
BmcAI	AGTACT	1 cut(s)	1031
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	796, 881
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	622, 707, 978
BmtI	GCTAGC	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	2 cut(s)	54, 950
BsaJI	CCNNGG	2 cut(s)	594, 875
BsaXI	ACNNNNNCTCC	4 cut(s)	653, 683, 864, 894
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 589, 876
Bse1I	ACTGG	3 cut(s)	101, 283, 835
Bse3DI	GCAATG	2 cut(s)	10, 1006
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	594, 875
BseGI	GGATG	5 cut(s)	37, 468, 613, 806, 818
BseLI	CCNNNNNNNGG	3 cut(s)	263, 589, 876
BseMI	GCAATG	2 cut(s)	10, 1006
BseNI	ACTGG	3 cut(s)	101, 283, 835
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	3 cut(s)	135, 476, 823
BshFI	GGCC	2 cut(s)	38, 593
BshNI	GGYRCC	1 cut(s)	794
BsiHKAI	GWGCWC	2 cut(s)	10, 761
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	3 cut(s)	263, 589, 876
BsmAI	GTCTC	2 cut(s)	24, 685
BsnI	GGCC	2 cut(s)	38, 593
Bsp1286I	GDGCHC	2 cut(s)	10, 761
Bsp143I	GATC	3 cut(s)	496, 535, 764
Bsp19I	CCATGG	2 cut(s)	594, 875
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	2 cut(s)	38, 593
BspHI	TCATGA	2 cut(s)	22, 85
BspLI	GGNNCC	2 cut(s)	796, 881
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	772
BspT107I	GGYRCC	1 cut(s)	794
BsrDI	GCAATG	2 cut(s)	10, 1006
BsrI	ACTGG	3 cut(s)	101, 283, 835
BssECI	CCNNGG	2 cut(s)	594, 875
BssMI	GATC	3 cut(s)	496, 535, 764
BssT1I	CCWWGG	2 cut(s)	594, 875
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	4 cut(s)	98, 404, 722, 853
Bst6I	CTCTTC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstC8I	GCNNGC	5 cut(s)	229, 261, 552, 611, 799
BstDEI	CTNAG	1 cut(s)	640
BstDSI	CCRYGG	2 cut(s)	594, 875
BstF5I	GGATG	5 cut(s)	37, 468, 613, 806, 818
BstH2I	RGCGCY	1 cut(s)	837
BstHHI	GCGC	1 cut(s)	836
BstKTI	GATC	3 cut(s)	499, 538, 767
BstMAI	GTCTC	2 cut(s)	24, 685
BstMBI	GATC	3 cut(s)	496, 535, 764
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 484
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	2 cut(s)	554, 613
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	3 cut(s)	135, 476, 823
BstV2I	GAAGAC	2 cut(s)	54, 950
BstXI	CCANNNNNNTGG	1 cut(s)	854
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	38, 593
BtgI	CCRYGG	2 cut(s)	594, 875
BtsCI	GGATG	5 cut(s)	37, 468, 613, 806, 818
BtsIMutI	CAGTG	2 cut(s)	731, 828
Cac8I	GCNNGC	5 cut(s)	229, 261, 552, 611, 799
CciI	TCATGA	2 cut(s)	22, 85
CfoI	GCGC	1 cut(s)	836
Cfr13I	GGNCC	1 cut(s)	266
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	3 cut(s)	670, 902, 1030
CviAII	CATG	7 cut(s)	23, 86, 488, 551, 595, 610, 876
CviQI	GTAC	3 cut(s)	670, 902, 1030
DdeI	CTNAG	1 cut(s)	640
DpnI	GATC	3 cut(s)	498, 537, 766
DpnII	GATC	3 cut(s)	496, 535, 764
EaeI	YGGCCR	2 cut(s)	36, 591
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	2 cut(s)	594, 875
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	2 cut(s)	264, 696
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	594, 875
EcoT22I	ATGCAT	1 cut(s)	615
ErhI	CCWWGG	2 cut(s)	594, 875
FaeI	CATG	7 cut(s)	26, 89, 491, 554, 598, 613, 879
FalI	AAGNNNNNCTT	2 cut(s)	334, 366
FatI	CATG	7 cut(s)	22, 85, 487, 550, 594, 609, 875
Fnu4HI	GCNGC	3 cut(s)	149, 465, 837
FokI	GGATG	5 cut(s)	44, 455, 600, 793, 805
Fsp4HI	GCNGC	3 cut(s)	149, 465, 837
FspBI	CTAG	2 cut(s)	132, 260
GlaI	GCGC	1 cut(s)	835
GluI	GCNGC	3 cut(s)	149, 465, 837
HaeII	RGCGCY	1 cut(s)	837
HaeIII	GGCC	2 cut(s)	38, 593
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	836
Hin1II	CATG	7 cut(s)	26, 89, 491, 554, 598, 613, 879
Hin6I	GCGC	1 cut(s)	834
HinP1I	GCGC	1 cut(s)	834
HincII	GTYRAC	1 cut(s)	898
HindII	GTYRAC	1 cut(s)	898
HindIII	AAGCTT	1 cut(s)	678
HinfI	GANTC	5 cut(s)	89, 111, 365, 733, 843
HpaI	GTTAAC	1 cut(s)	898
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	3 cut(s)	231, 378, 696
Hpy166II	GTNNAC	1 cut(s)	898
Hpy188I	TCNGA	4 cut(s)	177, 189, 535, 995
Hpy188III	TCNNGA	4 cut(s)	23, 86, 500, 924
Hpy8I	GTNNAC	1 cut(s)	898
HpyAV	CCTTC	3 cut(s)	186, 214, 381
HpyCH4III	ACNGT	4 cut(s)	98, 404, 722, 853
HpyCH4IV	ACGT	2 cut(s)	48, 900
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 484
HpyF3I	CTNAG	1 cut(s)	640
HpySE526I	ACGT	2 cut(s)	48, 900
Hsp92II	CATG	7 cut(s)	26, 89, 491, 554, 598, 613, 879
HspAI	GCGC	1 cut(s)	834
KspAI	GTTAAC	1 cut(s)	898
Kzo9I	GATC	3 cut(s)	496, 535, 764
LmnI	GCTCC	2 cut(s)	664, 885
Lsp1109I	GCAGC	3 cut(s)	135, 476, 823
LweI	GCATC	3 cut(s)	622, 707, 978
MaeI	CTAG	2 cut(s)	132, 260
MaeII	ACGT	2 cut(s)	48, 900
MalI	GATC	3 cut(s)	498, 537, 766
MboI	GATC	3 cut(s)	496, 535, 764
MboII	GAAGA	8 cut(s)	54, 224, 227, 342, 426, 693, 778, 950
MfeI	CAATTG	1 cut(s)	585
MhlI	GDGCHC	2 cut(s)	10, 761
MlsI	TGGCCA	2 cut(s)	38, 593
MluCI	AATT	7 cut(s)	66, 142, 382, 585, 742, 988, 1021
MluNI	TGGCCA	2 cut(s)	38, 593
MlyI	GAGTC	1 cut(s)	837
MmeI	TCCRAC	2 cut(s)	117, 200
MnlI	CCTC	2 cut(s)	655, 814
Mox20I	TGGCCA	2 cut(s)	38, 593
Mph1103I	ATGCAT	1 cut(s)	615
MscI	TGGCCA	2 cut(s)	38, 593
MseI	TTAA	3 cut(s)	738, 866, 897
MslI	CAYNNNNRTG	2 cut(s)	492, 618
Msp20I	TGGCCA	2 cut(s)	38, 593
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	416, 484
NcoI	CCATGG	2 cut(s)	594, 875
NdeII	GATC	3 cut(s)	496, 535, 764
NheI	GCTAGC	1 cut(s)	259
NlaIII	CATG	7 cut(s)	26, 89, 491, 554, 598, 613, 879
NlaIV	GGNNCC	2 cut(s)	796, 881
NsiI	ATGCAT	1 cut(s)	615
NspI	RCATGY	2 cut(s)	554, 613
PaeI	GCATGC	2 cut(s)	554, 613
PagI	TCATGA	2 cut(s)	22, 85
PfeI	GAWTC	4 cut(s)	89, 111, 365, 733
PflMI	CCANNNNNTGG	1 cut(s)	876
PkrI	GCNGC	3 cut(s)	150, 466, 838
PleI	GAGTC	1 cut(s)	837
PpsI	GAGTC	1 cut(s)	837
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	796, 881
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	3 cut(s)	671, 903, 1031
RsaNI	GTAC	3 cut(s)	670, 902, 1030
RseI	CAYNNNNRTG	2 cut(s)	492, 618
SaqAI	TTAA	3 cut(s)	738, 866, 897
SatI	GCNGC	3 cut(s)	149, 465, 837
Sau3AI	GATC	3 cut(s)	496, 535, 764
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	1031
SchI	GAGTC	1 cut(s)	837
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	2 cut(s)	10, 761
SetI	ASST	9 cut(s)	51, 229, 244, 412, 576, 682, 718, 903, 914
SfaNI	GCATC	3 cut(s)	622, 707, 978
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	492, 618
SphI	GCATGC	2 cut(s)	554, 613
Sse9I	AATT	7 cut(s)	66, 142, 382, 585, 742, 988, 1021
SsiI	CCGC	1 cut(s)	257
SspI	AATATT	2 cut(s)	289, 415
SspMI	CTAG	2 cut(s)	132, 260
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	594, 875
TaaI	ACNGT	4 cut(s)	98, 404, 722, 853
TaiI	ACGT	2 cut(s)	51, 903
TaqI	TCGA	2 cut(s)	109, 298
TasI	AATT	7 cut(s)	66, 142, 382, 585, 742, 988, 1021
TatI	WGTACW	1 cut(s)	1029
TfiI	GAWTC	4 cut(s)	89, 111, 365, 733
Tru1I	TTAA	3 cut(s)	738, 866, 897
Tru9I	TTAA	3 cut(s)	738, 866, 897
TscAI	CASTG	2 cut(s)	731, 835
TseI	GCWGC	3 cut(s)	148, 464, 836
TspDTI	ATGAA	2 cut(s)	102, 145
TspRI	CASTG	2 cut(s)	731, 835
Van91I	CCANNNNNTGG	1 cut(s)	876
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	2 cut(s)	382, 742
XceI	RCATGY	2 cut(s)	554, 613
XspI	CTAG	2 cut(s)	132, 260
ZrmI	AGTACT	1 cut(s)	1031
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.