Prupe.1G006100_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
521275 .. 530423
9149 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G006100.3

Sequence Viewer

Length: 1479 bp
ATGGAAGACAATAAAACCCTAATAAAACAACCACCACAACCAGAGCTTGAACCCGACGAATTCCGAGAAGAGTTCAAATGCTGTGTTTGCCTGGATCTTCTTTACAAGCCAGTTGTATTAGGCTGCGGCCACATTTCATGTTTCTGGTGTGTCTTCAATGCCATGAATGCTGCTCGTGAGTCCTATTGTGCAGTTTGTCGGCGCCCATATAATCATTTTCCTAGTATCTGTCAGTTGCTGCATTTCTTACTCCAGAAGTTGTATCCTGAAGCATATAAGCAACGGGAAAAACAAGTGAGAGAAGAAGAAAAGGAATTTGGTTACTTCTCACCTCAATTTGATAATCCAATATCTGGATCACATCCTACTGAGGAGTCAAATATTCTGGACAATGTTCAGTCAGAGAACTCTGAAAGTTGTTCGTCTGGGGTAGGAGGATCTCCTTCACTTGTAAATTCACCAGAAACTATGTTAGATGATGAAGCTAATAGTAAAAGGCCTACAACATCTTTAAAGAATGTTGAAGCTACTGGAAATGCAGCCATCAAAGAAGACTGTTTGCATGATAATGGTCCTGAAAATGGAACTCACAATAAGGTTTCTGTTTCTGATCTACTGTGTGCTGCATGCAAGAACCTGCTCTTTCAACCTGTTGTTCTGAATTGCGGCCATGTATATTGTAAATCCTGTATCAACATCCCAGTTGATGGAGTTTCTAGGTGTCAGATTTGTCAAAGCATGCATCCGAACGGATTCCCTAGTGTTTGCTTAATTTTAGAACATTTCTTGGAGGAGCAGTATCCTGAAATATATGCACACAGACGATCATCTTCAATAAAACAAGCTGATTTGCATGCTCATCAACGTGCTGGCCAGCCAGTGTCAACGCTTTCTGATGATTACTTATCCGGCTGGTCTGGGGTCGGGCAGAATGTTCATTTTGCAATTGGTTGTGATTGCTGTGGGATGTCTCCAATTATTGGGGAGAGGTACAAATGTAAAGACTGCGTGGAGAAAATGGGTTTTGACCTATGTGGAGCATGCTATAATGCTCCTTTTAAGATCCCTGGACGATTCAATCAACAACATAAACCAGAGCACGTGCTTGAGCTTGTACCACCACGGATAATACATGTGCCTCCCTACCATTTAGATGAAGATGGTGCTGAATTTCAGGAAGACCTAGAAAATATCCCTGCTGCTCCCATTCCACAAGATCTTGAGCTTGTACCACCAGAGATAATAGCTATGCTTTCCTACCAGTCAGATGAAGATGGTGCCGAATTTCAGGAAGACCTAGAAATTATCCCTGCTGCTCCCATTCCGCAAGATCCAGAAAATGGCCCTAACAATGTGCCAAATGTTTATCCTGCCTTTGTAATGTCAGTTGATAACTTAGATCCAGATGATGATTCTGATGACGGTGCTTCACCGGATGTGATTCAAGAATGTGAAGGTACCAACCAGCCTAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

493

Amino Acids

54.72

Weight (kDa)

4.61

Isoelectric Point (pI)

62.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 645
Acc65I GGTACC 1 cut(s) 1457
AccB1I GGYRCC 3 cut(s) 201, 1277, 1457
AccB7I CCANNNNNTGG 4 cut(s) 353, 707, 980, 1340
AciI CCGC 3 cut(s) 126, 666, 1325
AclWI GGATC 6 cut(s) 102, 364, 445, 1057, 1325, 1394
AcoI YGGCCR 3 cut(s) 127, 667, 871
AcsI RAATTY 5 cut(s) 59, 314, 454, 1169, 1283
AcuI CTGAAG 1 cut(s) 288
AcvI CACGTG 1 cut(s) 1102
AcyI GRCGYC 1 cut(s) 202
AfaI GTAC 4 cut(s) 992, 1116, 1230, 1459
AfiI CCNNNNNNNGG 5 cut(s) 353, 581, 707, 980, 1340
AflIII ACRYGT 1 cut(s) 1132
AgsI TTSAA 8 cut(s) 50, 76, 157, 524, 647, 834, 1078, 1445
AjnI CCWGG 2 cut(s) 90, 1066
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AluBI AGCT 7 cut(s) 46, 485, 527, 845, 1111, 1225, 1247
AluI AGCT 7 cut(s) 46, 485, 527, 845, 1111, 1225, 1247
Alw21I GWGCWC 1 cut(s) 1101
Alw26I GTCTC 1 cut(s) 975
AlwI GGATC 6 cut(s) 102, 364, 445, 1057, 1325, 1394
AlwNI CAGNNNCTG 1 cut(s) 238
AoxI GGCC 5 cut(s) 127, 497, 667, 871, 1342
ApeKI GCWGC 7 cut(s) 123, 170, 238, 539, 623, 1199, 1313
ApoI RAATTY 5 cut(s) 59, 314, 454, 1169, 1283
Asp700I GAANNNNTTC 1 cut(s) 752
Asp718I GGTACC 1 cut(s) 1457
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 572, 1343
AsuHPI GGTGA 3 cut(s) 321, 450, 1422
AvaII GGWCC 1 cut(s) 572
BaeI ACNNNNGTAYC 2 cut(s) 982, 1015
BalI TGGCCA 1 cut(s) 873
BanI GGYRCC 3 cut(s) 201, 1277, 1457
BauI CACGAG 1 cut(s) 174
BbrPI CACGTG 1 cut(s) 1102
BbsI GAAGAC 5 cut(s) 12, 145, 558, 1185, 1299
Bbv12I GWGCWC 1 cut(s) 1101
BbvI GCAGC 7 cut(s) 110, 157, 225, 551, 610, 1186, 1300
BccI CCATC 4 cut(s) 551, 701, 1154, 1268
BciT130I CCWGG 2 cut(s) 92, 1068
BciVI GTATCC 2 cut(s) 273, 810
BcoDI GTCTC 1 cut(s) 975
BfaI CTAG 6 cut(s) 222, 717, 759, 1184, 1298, 1470
BfoI RGCGCY 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 645
BfuI GTATCC 2 cut(s) 273, 810
BglII AGATCT 1 cut(s) 1216
BisI GCNGC 9 cut(s) 124, 127, 171, 239, 540, 624, 667, 1200, 1314
BlsI GCNGC 9 cut(s) 125, 128, 172, 240, 541, 625, 668, 1201, 1315
Bme1390I CCNGG 2 cut(s) 92, 1068
Bme18I GGWCC 1 cut(s) 572
BmgT120I GGNCC 2 cut(s) 572, 1343
BmiI GGNNCC 3 cut(s) 203, 1279, 1459
BmrFI CCNGG 2 cut(s) 92, 1068
BmrI ACTGGG 1 cut(s) 695
BmsI GCATC 1 cut(s) 751
BmuI ACTGGG 1 cut(s) 695
BpiI GAAGAC 5 cut(s) 12, 145, 558, 1185, 1299
BpmI CTGGAG 1 cut(s) 236
BpuEI CTTGAG 2 cut(s) 1127, 1241
BsaAI YACGTR 1 cut(s) 1102
BsaHI GRCGYC 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 1066, 1121
BsaWI WCCGGW 1 cut(s) 1432
BsaXI ACNNNNNCTCC 2 cut(s) 782, 812
Bsc4I CCNNNNNNNGG 5 cut(s) 353, 581, 707, 980, 1340
Bse1I ACTGG 5 cut(s) 110, 535, 701, 878, 1261
BseBI CCWGG 2 cut(s) 92, 1068
BseDI CCNNGG 2 cut(s) 1066, 1121
BseGI GGATG 5 cut(s) 361, 696, 742, 972, 1441
BseLI CCNNNNNNNGG 5 cut(s) 353, 581, 707, 980, 1340
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 5 cut(s) 110, 535, 701, 878, 1261
BseRI GAGGAG 2 cut(s) 386, 806
BseXI GCAGC 7 cut(s) 110, 157, 225, 551, 610, 1186, 1300
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 5 cut(s) 129, 499, 669, 873, 1344
BshNI GGYRCC 3 cut(s) 201, 1277, 1457
BsiHKAI GWGCWC 1 cut(s) 1101
BsiSI CCGG 2 cut(s) 909, 1433
BslI CCNNNNNNNGG 5 cut(s) 353, 581, 707, 980, 1340
BsmAI GTCTC 1 cut(s) 975
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 5 cut(s) 129, 499, 669, 873, 1344
Bsp1286I GDGCHC 1 cut(s) 1101
Bsp143I GATC 9 cut(s) 94, 356, 437, 610, 824, 1062, 1216, 1330, 1399
BspACI CCGC 3 cut(s) 126, 666, 1325
BspANI GGCC 5 cut(s) 129, 499, 669, 873, 1344
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 3 cut(s) 203, 1279, 1459
BspMI ACCTGC 1 cut(s) 645
BspPI GGATC 6 cut(s) 102, 364, 445, 1057, 1325, 1394
BspT107I GGYRCC 3 cut(s) 201, 1277, 1457
BsrI ACTGG 5 cut(s) 110, 535, 701, 878, 1261
BssECI CCNNGG 2 cut(s) 1066, 1121
BssMI GATC 9 cut(s) 94, 356, 437, 610, 824, 1062, 1216, 1330, 1399
BssNI GRCGYC 1 cut(s) 202
BssSI CACGAG 1 cut(s) 174
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 92, 1068
Bst4CI ACNGT 3 cut(s) 557, 618, 1424
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 202
BstBAI YACGTR 1 cut(s) 1102
BstC8I GCNNGC 6 cut(s) 628, 740, 855, 871, 875, 1042
BstDEI CTNAG 2 cut(s) 369, 1396
BstDSI CCRYGG 1 cut(s) 1121
BstF5I GGATG 5 cut(s) 361, 696, 742, 972, 1441
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 9 cut(s) 97, 359, 440, 613, 827, 1065, 1219, 1333, 1402
BstMAI GTCTC 1 cut(s) 975
BstMBI GATC 9 cut(s) 94, 356, 437, 610, 824, 1062, 1216, 1330, 1399
BstMWI GCNNNNNNNGC 2 cut(s) 87, 167
BstNI CCWGG 2 cut(s) 92, 1068
BstNSI RCATGY 5 cut(s) 630, 742, 857, 1044, 1136
BstSCI CCNGG 2 cut(s) 90, 1066
BstV1I GCAGC 7 cut(s) 110, 157, 225, 551, 610, 1186, 1300
BstV2I GAAGAC 5 cut(s) 12, 145, 558, 1185, 1299
BstX2I RGATCY 6 cut(s) 94, 437, 1062, 1216, 1330, 1399
BstYI RGATCY 6 cut(s) 94, 437, 1062, 1216, 1330, 1399
BsuI GTATCC 2 cut(s) 273, 810
BsuRI GGCC 5 cut(s) 129, 499, 669, 873, 1344
BtgI CCRYGG 1 cut(s) 1121
BtsCI GGATG 5 cut(s) 361, 696, 742, 972, 1441
BtsIMutI CAGTG 1 cut(s) 885
BveI ACCTGC 1 cut(s) 645
Cac8I GCNNGC 6 cut(s) 628, 740, 855, 871, 875, 1042
CaiI CAGNNNCTG 1 cut(s) 238
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 572, 1343
Csp6I GTAC 4 cut(s) 991, 1115, 1229, 1458
CviAII CATG 9 cut(s) 138, 163, 563, 627, 671, 739, 854, 1041, 1133
CviQI GTAC 4 cut(s) 991, 1115, 1229, 1458
DdeI CTNAG 2 cut(s) 369, 1396
DinI GGCGCC 1 cut(s) 203
DpnI GATC 9 cut(s) 96, 358, 439, 612, 826, 1064, 1218, 1332, 1401
DpnII GATC 9 cut(s) 94, 356, 437, 610, 824, 1062, 1216, 1330, 1399
DraI TTTAAA 1 cut(s) 513
EaeI YGGCCR 3 cut(s) 127, 667, 871
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 572
Eco57I CTGAAG 1 cut(s) 288
Eco72I CACGTG 1 cut(s) 1102
EcoRI GAATTC 1 cut(s) 59
EcoRII CCWGG 2 cut(s) 90, 1066
EcoT22I ATGCAT 1 cut(s) 744
EgeI GGCGCC 1 cut(s) 203
EheI GGCGCC 1 cut(s) 203
FaeI CATG 9 cut(s) 141, 166, 566, 630, 674, 742, 857, 1044, 1136
FatI CATG 9 cut(s) 137, 162, 562, 626, 670, 738, 853, 1040, 1132
Fnu4HI GCNGC 9 cut(s) 124, 127, 171, 239, 540, 624, 667, 1200, 1314
FokI GGATG 5 cut(s) 348, 683, 729, 979, 1448
Fsp4HI GCNGC 9 cut(s) 124, 127, 171, 239, 540, 624, 667, 1200, 1314
FspBI CTAG 6 cut(s) 222, 717, 759, 1184, 1298, 1470
GlaI GCGC 1 cut(s) 203
GluI GCNGC 9 cut(s) 124, 127, 171, 239, 540, 624, 667, 1200, 1314
GsuI CTGGAG 1 cut(s) 236
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 5 cut(s) 129, 499, 669, 873, 1344
HapII CCGG 2 cut(s) 909, 1433
HhaI GCGC 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 9 cut(s) 141, 166, 566, 630, 674, 742, 857, 1044, 1136
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 885
HindII GTYRAC 1 cut(s) 885
HinfI GANTC 6 cut(s) 179, 374, 753, 1074, 1412, 1441
HpaII CCGG 2 cut(s) 909, 1433
HphI GGTGA 3 cut(s) 321, 450, 1422
Hpy166II GTNNAC 1 cut(s) 885
Hpy8I GTNNAC 1 cut(s) 885
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 453, 1448
HpyCH4III ACNGT 3 cut(s) 557, 618, 1424
HpyCH4IV ACGT 2 cut(s) 865, 1101
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 167
HpyF3I CTNAG 2 cut(s) 369, 1396
HpySE526I ACGT 2 cut(s) 865, 1101
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 9 cut(s) 141, 166, 566, 630, 674, 742, 857, 1044, 1136
HspAI GCGC 1 cut(s) 202
KasI GGCGCC 1 cut(s) 201
KpnI GGTACC 1 cut(s) 1461
Kzo9I GATC 9 cut(s) 94, 356, 437, 610, 824, 1062, 1216, 1330, 1399
LmnI GCTCC 5 cut(s) 793, 1037, 1057, 1207, 1321
Lsp1109I GCAGC 7 cut(s) 110, 157, 225, 551, 610, 1186, 1300
LweI GCATC 1 cut(s) 751
MaeI CTAG 6 cut(s) 222, 717, 759, 1184, 1298, 1470
MaeII ACGT 2 cut(s) 865, 1101
MaeIII GTNAC 1 cut(s) 320
MalI GATC 9 cut(s) 96, 358, 439, 612, 826, 1064, 1218, 1332, 1401
MboI GATC 9 cut(s) 94, 356, 437, 610, 824, 1062, 1216, 1330, 1399
MfeI CAATTG 1 cut(s) 945
MflI RGATCY 6 cut(s) 94, 437, 1062, 1216, 1330, 1399
MhlI GDGCHC 1 cut(s) 1101
MlsI TGGCCA 1 cut(s) 873
MluNI TGGCCA 1 cut(s) 873
Mly113I GGCGCC 1 cut(s) 202
MlyI GAGTC 2 cut(s) 188, 383
MnlI CCTC 6 cut(s) 342, 364, 428, 784, 981, 1149
Mox20I TGGCCA 1 cut(s) 873
Mph1103I ATGCAT 1 cut(s) 744
MroXI GAANNNNTTC 1 cut(s) 752
MscI TGGCCA 1 cut(s) 873
MseI TTAA 3 cut(s) 512, 770, 1059
MslI CAYNNNNRTG 3 cut(s) 567, 864, 1152
Msp20I TGGCCA 1 cut(s) 873
MspI CCGG 2 cut(s) 909, 1433
MspR9I CCNGG 2 cut(s) 92, 1068
MunI CAATTG 1 cut(s) 945
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 2 cut(s) 92, 1068
MwoI GCNNNNNNNGC 2 cut(s) 87, 167
NarI GGCGCC 1 cut(s) 202
NdeII GATC 9 cut(s) 94, 356, 437, 610, 824, 1062, 1216, 1330, 1399
NlaIII CATG 9 cut(s) 141, 166, 566, 630, 674, 742, 857, 1044, 1136
NlaIV GGNNCC 3 cut(s) 203, 1279, 1459
NsiI ATGCAT 1 cut(s) 744
NspI RCATGY 5 cut(s) 630, 742, 857, 1044, 1136
PaeI GCATGC 4 cut(s) 630, 742, 857, 1044
PceI AGGCCT 1 cut(s) 499
PciI ACATGT 1 cut(s) 1132
PctI GAATGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 4 cut(s) 753, 1074, 1412, 1441
PflMI CCANNNNNTGG 4 cut(s) 353, 707, 980, 1340
PkrI GCNGC 9 cut(s) 125, 128, 172, 240, 541, 625, 668, 1201, 1315
PleI GAGTC 2 cut(s) 187, 382
PluTI GGCGCC 1 cut(s) 205
PmaCI CACGTG 1 cut(s) 1102
PmlI CACGTG 1 cut(s) 1102
PpsI GAGTC 2 cut(s) 187, 382
Ppu21I YACGTR 1 cut(s) 1102
PscI ACATGT 1 cut(s) 1132
Psp6I CCWGG 2 cut(s) 90, 1066
PspCI CACGTG 1 cut(s) 1102
PspGI CCWGG 2 cut(s) 90, 1066
PspN4I GGNNCC 3 cut(s) 203, 1279, 1459
PspPI GGNCC 2 cut(s) 572, 1343
PstNI CAGNNNCTG 1 cut(s) 238
PsuI RGATCY 6 cut(s) 94, 437, 1062, 1216, 1330, 1399
RsaI GTAC 4 cut(s) 992, 1116, 1230, 1459
RsaNI GTAC 4 cut(s) 991, 1115, 1229, 1458
RseI CAYNNNNRTG 3 cut(s) 567, 864, 1152
SaqAI TTAA 3 cut(s) 512, 770, 1059
SatI GCNGC 9 cut(s) 124, 127, 171, 239, 540, 624, 667, 1200, 1314
Sau3AI GATC 9 cut(s) 94, 356, 437, 610, 824, 1062, 1216, 1330, 1399
Sau96I GGNCC 2 cut(s) 572, 1343
SchI GAGTC 2 cut(s) 188, 383
ScrFI CCNGG 2 cut(s) 92, 1068
SduI GDGCHC 1 cut(s) 1101
SfaNI GCATC 1 cut(s) 751
SfoI GGCGCC 1 cut(s) 203
SinI GGWCC 1 cut(s) 572
SmiMI CAYNNNNRTG 3 cut(s) 567, 864, 1152
SmlI CTYRAG 2 cut(s) 1106, 1220
SmoI CTYRAG 2 cut(s) 1106, 1220
SphI GCATGC 4 cut(s) 630, 742, 857, 1044
SseBI AGGCCT 1 cut(s) 499
SsiI CCGC 3 cut(s) 126, 666, 1325
SspDI GGCGCC 1 cut(s) 201
SspI AATATT 1 cut(s) 382
SspMI CTAG 6 cut(s) 222, 717, 759, 1184, 1298, 1470
StuI AGGCCT 1 cut(s) 499
StyD4I CCNGG 2 cut(s) 90, 1066
TaaI ACNGT 3 cut(s) 557, 618, 1424
TaiI ACGT 2 cut(s) 868, 1104
TauI GCSGC 2 cut(s) 129, 669
TfiI GAWTC 4 cut(s) 753, 1074, 1412, 1441
Tru1I TTAA 3 cut(s) 512, 770, 1059
Tru9I TTAA 3 cut(s) 512, 770, 1059
TscAI CASTG 1 cut(s) 885
TseI GCWGC 7 cut(s) 123, 170, 238, 539, 623, 1199, 1313
TspDTI ATGAA 6 cut(s) 126, 179, 495, 926, 1170, 1284
TspGWI ACGGA 2 cut(s) 765, 1138
TspRI CASTG 1 cut(s) 885
Van91I CCANNNNNTGG 4 cut(s) 353, 707, 980, 1340
VpaK11BI GGWCC 1 cut(s) 572
XapI RAATTY 5 cut(s) 59, 314, 454, 1169, 1283
XceI RCATGY 5 cut(s) 630, 742, 857, 1044, 1136
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 6 cut(s) 222, 717, 759, 1184, 1298, 1470
Zsp2I ATGCAT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.