Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012718

Physical Location & Seq

Genomic Coordinates Reverse (-)

1542051 .. 1544469

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCAGAGGTACTAAGTGAAGAACAGATTGTTGAATTCAAAGAGGCATTTTGTCTATTTGATAAGGATGGAGACGGTTGCATAACTATTGAAGAATTGGCTACAGTTATTCGGTCACTGGATCAAAATCCAACAGAGGAGGAACTTCAGGACATGATAAGTGAGGTTGATGCTGATGGAAATGGGACCATAGAGTTTGCCGAGTTCTTGAACTTGATGGCAAACAAAATGAAGGAAACTGATGCAGAGGAGGAGCTCAAAGAGGCCTTCAAGGTATTTGACAAGGATCAGAATGGATATATATCAGCTAATGAGCTGAGGCATGTAATGATCAATCTAGGCGAAAAATTGACGGACGAAGAAGTCGAGCAGATGATCAAAGAGGCCGATTTGGACGGCGATGGTCAAGTAAACTATGACGAATTTGTGAAGATGATGATGACCATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005513 GO:0007154 GO:0007165 GO:0008150 GO:0009593 GO:0009987 GO:0010035 GO:0010038 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051606 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_7

Protein Analysis

151

Amino Acids

17.03

Weight (kDa)

4.05

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIF-1	PF21008	7 - 76	2.6e-07	Allograft inflammatory factor 1
EF-hand_1	PF00036	12 - 40	1.3e-08	EF hand domain
EF-hand_6	PF13405	12 - 40	5.4e-08	EF-hand domain
EF-hand_7	PF13499	13 - 73	3.3e-17	EF-hand domain pair
EF-hand_9	PF14658	16 - 75	7.9e-09	EF-hand domain
EF-hand_8	PF13833	25 - 74	5.4e-10	EF-hand domain pair
EF-hand_1	PF00036	48 - 74	1.2e-07	EF hand domain
EF-hand_7	PF13499	83 - 147	2.7e-22	EF-hand domain pair
EF-hand_1	PF00036	85 - 112	2.9e-09	EF hand domain
EF-hand_6	PF13405	85 - 114	1.7e-09	EF-hand domain
EF-hand_5	PF13202	86 - 110	3.2e-06	EF hand
EF-hand_9	PF14658	88 - 148	1.9e-06	EF-hand domain
EF-hand_8	PF13833	105 - 146	1.3e-08	EF-hand domain pair
EF-hand_1	PF00036	121 - 148	4e-09	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22930
fragaria_vesca	FvH4_4g01760 FvH4_4g01760
malus_domestica	MD13G1201800.v1.1 MD16G1202100.v1.1
prunus_persica	Prupe.1G023600_v2.0.a1 Prupe.1G023600_v2.0.a1
pyrus_communis	pycom13g17520 pycom16g17050
rosa_chinensis	RchiOBHm_Chr4g0388611
rosa_laevigata	RLG00000010034
rosa_multiflora	Rmu_sc0004459.1_g000014
rosa_roxburghii	Rroxscaffold_5G00335070
rosa_rugosa	Rorug03G0319300 Rorug03G0319400
rosa_samantha	Rh4BG016900 Rh4DG017700
rosa_wichuraiana	Rw4G001690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AclWI	GGATC	2 cut(s)	129, 294
AcsI	RAATTY	2 cut(s)	35, 422
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	12
AgsI	TTSAA	5 cut(s)	35, 40, 92, 211, 271
AluBI	AGCT	3 cut(s)	256, 308, 316
AluI	AGCT	3 cut(s)	256, 308, 316
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	129, 294
AoxI	GGCC	2 cut(s)	264, 384
ApoI	RAATTY	2 cut(s)	35, 422
AspS9I	GGNCC	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvCI	CCTCAGC	1 cut(s)	317
BccI	CCATC	4 cut(s)	62, 170, 211, 395
BceAI	ACGGC	1 cut(s)	412
BclI	TGATCA	2 cut(s)	330, 375
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	187
BmsI	GCATC	2 cut(s)	160, 232
Bpu10I	CCTNAGC	1 cut(s)	317
BsaBI	GATNNNNATC	2 cut(s)	126, 301
Bse1I	ACTGG	1 cut(s)	123
Bse8I	GATNNNNATC	2 cut(s)	126, 301
BseGI	GGATG	1 cut(s)	73
BseJI	GATNNNNATC	2 cut(s)	126, 301
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	3 cut(s)	152, 263, 266
BshFI	GGCC	2 cut(s)	266, 386
BsiHKAI	GWGCWC	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	266, 386
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	4 cut(s)	121, 286, 330, 375
BspANI	GGCC	2 cut(s)	266, 386
BspCNI	CTCAG	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	2 cut(s)	129, 294
BsrI	ACTGG	1 cut(s)	123
BssMI	GATC	4 cut(s)	121, 286, 330, 375
Bst4CI	ACNGT	2 cut(s)	77, 106
BstDEI	CTNAG	2 cut(s)	14, 317
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	4 cut(s)	124, 289, 333, 378
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	4 cut(s)	121, 286, 330, 375
BstNSI	RCATGY	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	266, 386
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	2 cut(s)	154, 323
CviJI	RGCY	6 cut(s)	101, 256, 266, 308, 316, 386
CviKI_1	RGCY	6 cut(s)	101, 256, 266, 308, 316, 386
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	2 cut(s)	14, 317
DpnI	GATC	4 cut(s)	123, 288, 332, 377
DpnII	GATC	4 cut(s)	121, 286, 330, 375
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	256
Eco147I	AGGCCT	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	2 cut(s)	157, 326
FaiI	YATR	7 cut(s)	83, 155, 191, 300, 302, 324, 417
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	2 cut(s)	153, 322
FbaI	TGATCA	2 cut(s)	330, 375
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	266, 386
Hin1II	CATG	2 cut(s)	157, 326
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	149, 208
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	2 cut(s)	226, 277
HpyCH4III	ACNGT	2 cut(s)	77, 106
HpyCH4V	TGCA	2 cut(s)	81, 245
HpyF3I	CTNAG	2 cut(s)	14, 317
Hsp92II	CATG	2 cut(s)	157, 326
Ksp22I	TGATCA	2 cut(s)	330, 375
Kzo9I	GATC	4 cut(s)	121, 286, 330, 375
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	2 cut(s)	104, 134
LweI	GCATC	2 cut(s)	160, 232
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	4 cut(s)	123, 288, 332, 377
MboI	GATC	4 cut(s)	121, 286, 330, 375
MboII	GAAGA	4 cut(s)	32, 104, 371, 442
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	4 cut(s)	35, 95, 347, 422
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	9 cut(s)	37, 130, 133, 157, 241, 244, 256, 312, 376
NdeII	GATC	4 cut(s)	121, 286, 330, 375
NlaIII	CATG	2 cut(s)	157, 326
NlaIV	GGNNCC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	114
NspI	RCATGY	1 cut(s)	326
PceI	AGGCCT	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	186
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	258
Sau3AI	GATC	4 cut(s)	121, 286, 330, 375
Sau96I	GGNCC	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	6 cut(s)	12, 168, 258, 276, 310, 318
SfaNI	GCATC	2 cut(s)	160, 232
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	186
Sse9I	AATT	4 cut(s)	35, 95, 347, 422
SseBI	AGGCCT	1 cut(s)	266
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	258
StuI	AGGCCT	1 cut(s)	266
TaaI	ACNGT	2 cut(s)	77, 106
TaqI	TCGA	1 cut(s)	366
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	35, 95, 347, 422
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	1 cut(s)	245
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	2 cut(s)	35, 422
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.