Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012718

Physical Location & Seq

Genomic Coordinates Reverse (-)

2556332 .. 2559060

Gene Structure 2729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCAGAGGTACTAAGTGAAGAACAGATTGTTGAATTTAAAGAGGCATTCTGTCTATTTGACAAGGATGGAGACGGTGAGTTTCCTACTACTATGTCCTCAATTCTTGGTTGCATAACTGTCGAAGAATTGGCGACAGTTATCCGGTCTCTGGATCAAAATCCAACAGAGGAGGAACTTCAGGATATGATTAGCGAAGTTGATGCTGATGGAAATGGGACCATAGAGTTTGCAGAGTTCTTGAGCTTGATGGCAAACAAAATGAAGGAAACGGATGCAGAGGAGGAGCTTAAAGAGGCCTTCAAGGTATTCGACAAGGATCAGAATGGATATATATCAGCTAATGAGCTGAGGCATGTAATGATCAATCTAGGAGAAAAATTGACGGACGAAGAGGTCGAGCAGATGATCAAGGAGGCCGATTTGGATGGCGATGGTCAAGTTAACTATGACGAATTTGTGAAGATGATGATGACCATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005513 GO:0007154 GO:0007165 GO:0008150 GO:0009593 GO:0009987 GO:0010035 GO:0010038 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051606 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_7

Protein Analysis

161

Amino Acids

18.16

Weight (kDa)

4.05

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_9	PF14658	36 - 86	4.3e-06	EF-hand domain
EF-hand_7	PF13499	37 - 84	8.8e-10	EF-hand domain pair
EF-hand_8	PF13833	37 - 85	3.6e-10	EF-hand domain pair
EF-hand_1	PF00036	59 - 85	1.4e-07	EF hand domain
EF-hand_7	PF13499	94 - 158	3.1e-22	EF-hand domain pair
EF-hand_1	PF00036	96 - 123	3.3e-09	EF hand domain
EF-hand_6	PF13405	96 - 125	1.9e-09	EF-hand domain
EF-hand_5	PF13202	97 - 121	3.5e-06	EF hand
EF-hand_9	PF14658	99 - 159	2.2e-06	EF-hand domain
EF-hand_8	PF13833	112 - 157	2e-09	EF-hand domain pair
EF-hand_1	PF00036	132 - 159	4.5e-09	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22930
fragaria_vesca	FvH4_4g01760 FvH4_4g01760
malus_domestica	MD13G1201800.v1.1 MD16G1202100.v1.1
prunus_persica	Prupe.1G023600_v2.0.a1 Prupe.1G023600_v2.0.a1
pyrus_communis	pycom13g17520 pycom16g17050
rosa_chinensis	RchiOBHm_Chr4g0388611
rosa_laevigata	RLG00000010034
rosa_multiflora	Rmu_sc0004459.1_g000014
rosa_roxburghii	Rroxscaffold_5G00335070
rosa_rugosa	Rorug03G0319300 Rorug03G0319400
rosa_samantha	Rh4BG016900 Rh4DG017700
rosa_wichuraiana	Rw4G001690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
AclWI	GGATC	2 cut(s)	162, 327
AcsI	RAATTY	2 cut(s)	35, 455
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	35, 304
AluBI	AGCT	4 cut(s)	246, 289, 341, 349
AluI	AGCT	4 cut(s)	246, 289, 341, 349
Alw26I	GTCTC	2 cut(s)	66, 153
AlwI	GGATC	2 cut(s)	162, 327
AoxI	GGCC	2 cut(s)	297, 417
ApoI	RAATTY	2 cut(s)	35, 455
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	350
BccI	CCATC	5 cut(s)	62, 203, 244, 422, 428
BcgI	CGANNNNNNTGC	4 cut(s)	103, 137, 185, 219
BclI	TGATCA	2 cut(s)	363, 408
BcoDI	GTCTC	2 cut(s)	66, 153
BfaI	CTAG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	2 cut(s)	193, 265
Bpu10I	CCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	262
BsaBI	GATNNNNATC	2 cut(s)	159, 334
BsaI	GGTCTC	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse8I	GATNNNNATC	2 cut(s)	159, 334
BseGI	GGATG	3 cut(s)	73, 280, 433
BseJI	GATNNNNATC	2 cut(s)	159, 334
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	341
BseRI	GAGGAG	3 cut(s)	185, 296, 299
BshFI	GGCC	2 cut(s)	299, 419
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	66, 153
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	299, 419
Bso31I	GGTCTC	1 cut(s)	153
Bsp143I	GATC	4 cut(s)	154, 319, 363, 408
BspANI	GGCC	2 cut(s)	299, 419
BspCNI	CTCAG	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	2 cut(s)	162, 327
BspTNI	GGTCTC	1 cut(s)	153
BssMI	GATC	4 cut(s)	154, 319, 363, 408
Bst4CI	ACNGT	3 cut(s)	77, 121, 139
Bst6I	CTCTTC	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	14, 350
BstF5I	GGATG	3 cut(s)	73, 280, 433
BstKTI	GATC	4 cut(s)	157, 322, 366, 411
BstMAI	GTCTC	2 cut(s)	66, 153
BstMBI	GATC	4 cut(s)	154, 319, 363, 408
BstNSI	RCATGY	1 cut(s)	359
BsuRI	GGCC	2 cut(s)	299, 419
BtgZI	GCGATG	1 cut(s)	447
BtsCI	GGATG	3 cut(s)	73, 280, 433
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	6 cut(s)	246, 289, 299, 341, 349, 419
CviKI_1	RGCY	6 cut(s)	246, 289, 299, 341, 349, 419
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	2 cut(s)	14, 350
DpnI	GATC	4 cut(s)	156, 321, 365, 410
DpnII	GATC	4 cut(s)	154, 319, 363, 408
DraI	TTTAAA	1 cut(s)	40
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco147I	AGGCCT	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	1 cut(s)	359
FaiI	YATR	8 cut(s)	95, 116, 188, 224, 333, 335, 357, 450
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	355
FbaI	TGATCA	2 cut(s)	363, 408
FokI	GGATG	3 cut(s)	80, 287, 440
FspBI	CTAG	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	299, 419
HapII	CCGG	1 cut(s)	145
Hin1II	CATG	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HpaI	GTTAAC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	3 cut(s)	152, 182, 241
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	2 cut(s)	259, 310
HpyCH4III	ACNGT	3 cut(s)	77, 121, 139
HpyCH4V	TGCA	3 cut(s)	114, 233, 278
HpyF3I	CTNAG	2 cut(s)	14, 350
Hsp92II	CATG	1 cut(s)	359
Ksp22I	TGATCA	2 cut(s)	363, 408
KspAI	GTTAAC	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	154, 319, 363, 408
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	3 cut(s)	137, 158, 167
LweI	GCATC	2 cut(s)	193, 265
MaeI	CTAG	1 cut(s)	371
MalI	GATC	4 cut(s)	156, 321, 365, 410
MboI	GATC	4 cut(s)	154, 319, 363, 408
MboII	GAAGA	4 cut(s)	32, 137, 404, 475
MluCI	AATT	5 cut(s)	35, 102, 128, 380, 455
MmeI	TCCRAC	1 cut(s)	188
MseI	TTAA	3 cut(s)	39, 291, 444
MspI	CCGG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	47
NdeII	GATC	4 cut(s)	154, 319, 363, 408
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	219
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	39, 291, 444
Sau3AI	GATC	4 cut(s)	154, 319, 363, 408
Sau96I	GGNCC	1 cut(s)	219
SetI	ASST	7 cut(s)	12, 248, 291, 309, 343, 351, 399
SfaNI	GCATC	2 cut(s)	193, 265
SinI	GGWCC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	5 cut(s)	35, 102, 128, 380, 455
SseBI	AGGCCT	1 cut(s)	299
SspMI	CTAG	1 cut(s)	371
StuI	AGGCCT	1 cut(s)	299
TaaI	ACNGT	3 cut(s)	77, 121, 139
TaqI	TCGA	3 cut(s)	123, 312, 399
TasI	AATT	5 cut(s)	35, 102, 128, 380, 455
Tru1I	TTAA	3 cut(s)	39, 291, 444
Tru9I	TTAA	3 cut(s)	39, 291, 444
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	2 cut(s)	287, 401
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	2 cut(s)	35, 455
XceI	RCATGY	1 cut(s)	359
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.