Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012718

Physical Location & Seq

Genomic Coordinates Reverse (-)

34517364 .. 34522363

Gene Structure 5000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0319400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCGGGGGCGAACGGTGGAGGAGTCGACGTGGAGGTTAGCGAAGGCGCGGTCAAACTGATCCAGCGAGAGGACGAGACTCTGTTGGGTGTCGTCAACCGTTTGATTGGTGCCATTTTGTTTCCGGACCCCAGCAGTGGTGCTTCGCTGTATCACCGGATCAAGACCTCTCTCGCCGAGAATGGTCCGCTCTTTCGGGAAGCTTCTAGAAACACCGGACGCAGCGTTCGTATCTGGACTCGTCAGGGAAGTCCTCTCCGAGCACTCCTCGTCATCTCTGTTGGCACAATCACTCTTTTGGCTTTGACAGGATTGCTTGTCTTCATGCTTTTTTTCCTGGCAGCAACTTTCAATGCCATTGTTATCTCGCTTTTATTATCTTTGGCAGCTGCAGGAGGATTCTTGGCCCTCTTCTTTACCTGTATAGCAGCTATATACATTGGAGCACTATCAGTTGCCGTTTTTGTTGTTTCCGTGACAACAATTTCTGCGATTATAGCTGTTCTGATAACTACAGGTTGGATTGGATTCTTTTGGTTCGTGTGGCTGGCAAGTAAGAAAAGTCTTAGCCTTGCTAAGCACTCACTCAGCGTGACTGGTTCGACCATTTCAGCTTACTCTTATGGAAGGCATGCTCGCTATCCTCAATCTGAAGACAAGGTTTCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005513 GO:0007154 GO:0007165 GO:0008150 GO:0009593 GO:0009987 GO:0010035 GO:0010038 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051592 GO:0051606 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_7

Protein Analysis

223

Amino Acids

23.63

Weight (kDa)

9.77

Isoelectric Point (pI)

21.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22930
fragaria_vesca	FvH4_4g01760 FvH4_4g01760
malus_domestica	MD13G1201800.v1.1 MD16G1202100.v1.1
prunus_persica	Prupe.1G023600_v2.0.a1 Prupe.1G023600_v2.0.a1
pyrus_communis	pycom13g17520 pycom16g17050
rosa_chinensis	RchiOBHm_Chr4g0388611
rosa_laevigata	RLG00000010034
rosa_multiflora	Rmu_sc0004459.1_g000014
rosa_roxburghii	Rroxscaffold_5G00335070
rosa_rugosa	Rorug03G0319300 Rorug03G0319400
rosa_samantha	Rh4BG016900 Rh4DG017700
rosa_wichuraiana	Rw4G001690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	50
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	3 cut(s)	5, 50, 188
AclWI	GGATC	2 cut(s)	55, 167
AcuI	CTGAAG	1 cut(s)	672
AfiI	CCNNNNNNNGG	2 cut(s)	70, 137
AgsI	TTSAA	1 cut(s)	352
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	336
AloI	GAACNNNNNNTCC	2 cut(s)	210, 242
AluBI	AGCT	5 cut(s)	203, 389, 431, 500, 614
AluI	AGCT	5 cut(s)	203, 389, 431, 500, 614
Alw21I	GWGCWC	2 cut(s)	265, 448
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	55, 167
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	5 cut(s)	222, 341, 386, 389, 428
ArsI	GACNNNNNNTTYG	4 cut(s)	36, 68, 210, 242
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	3 cut(s)	127, 185, 406
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	127, 185
BanI	GGYRCC	1 cut(s)	110
BbsI	GAAGAC	2 cut(s)	313, 660
Bbv12I	GWGCWC	2 cut(s)	265, 448
BbvI	GCAGC	5 cut(s)	234, 353, 376, 398, 440
BceAI	ACGGC	1 cut(s)	443
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	2 cut(s)	390, 513
BisI	GCNGC	5 cut(s)	223, 342, 387, 390, 429
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	5 cut(s)	224, 343, 388, 391, 430
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	2 cut(s)	127, 185
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	3 cut(s)	127, 185, 406
BmiI	GGNNCC	2 cut(s)	112, 129
BmrFI	CCNGG	1 cut(s)	338
BpiI	GAAGAC	2 cut(s)	313, 660
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
Bpu1102I	GCTNAGC	1 cut(s)	576
BsaWI	WCCGGW	3 cut(s)	124, 156, 215
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 137
Bse1I	ACTGG	1 cut(s)	601
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	70, 137
BseMII	CTCAG	1 cut(s)	601
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	36, 257
BseXI	GCAGC	5 cut(s)	234, 353, 376, 398, 440
BseYI	CCCAGC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	407
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	265, 448
BsiSI	CCGG	3 cut(s)	125, 157, 216
BslI	CCNNNNNNNGG	2 cut(s)	70, 137
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	265, 448
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	60, 159
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	3 cut(s)	5, 50, 188
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	600
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	112, 129
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	2 cut(s)	55, 167
BspT107I	GGYRCC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	601
BssMI	GATC	2 cut(s)	60, 159
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	17, 101
Bst6I	CTCTTC	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	549, 633, 637
BstDEI	CTNAG	3 cut(s)	566, 576, 587
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	2 cut(s)	63, 162
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	2 cut(s)	60, 159
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	2 cut(s)	390, 513
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	5 cut(s)	234, 353, 376, 398, 440
BstV2I	GAAGAC	2 cut(s)	313, 660
BsuRI	GGCC	1 cut(s)	407
BtrI	CACGTC	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	549, 633, 637
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	3 cut(s)	127, 185, 406
CseI	GACGC	1 cut(s)	228
CviAII	CATG	2 cut(s)	325, 632
CviJI	RGCY	9 cut(s)	203, 302, 389, 407, 431, 500, 547, 570, 614
CviKI_1	RGCY	9 cut(s)	203, 302, 389, 407, 431, 500, 547, 570, 614
DdeI	CTNAG	3 cut(s)	566, 576, 587
DpnI	GATC	2 cut(s)	62, 161
DpnII	GATC	2 cut(s)	60, 159
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco47I	GGWCC	2 cut(s)	127, 185
Eco57I	CTGAAG	1 cut(s)	672
EcoRII	CCWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	328, 635
FaiI	YATR	7 cut(s)	326, 425, 434, 436, 497, 624, 633
FatI	CATG	2 cut(s)	324, 631
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	5 cut(s)	223, 342, 387, 390, 429
Fsp4HI	GCNGC	5 cut(s)	223, 342, 387, 390, 429
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	5 cut(s)	223, 342, 387, 390, 429
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	3 cut(s)	125, 157, 216
HgaI	GACGC	1 cut(s)	228
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	328, 635
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	28, 97
HindII	GTYRAC	2 cut(s)	28, 97
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	5 cut(s)	24, 79, 238, 399, 528
HpaII	CCGG	3 cut(s)	125, 157, 216
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	28, 97
Hpy188I	TCNGA	3 cut(s)	260, 507, 652
Hpy188III	TCNNGA	5 cut(s)	125, 163, 197, 207, 235
Hpy8I	GTNNAC	2 cut(s)	28, 97
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	38, 621
HpyCH4III	ACNGT	2 cut(s)	17, 101
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	3 cut(s)	566, 576, 587
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	328, 635
HspAI	GCGC	1 cut(s)	48
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	60, 159
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	5 cut(s)	234, 353, 376, 398, 440
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	475, 592
MalI	GATC	2 cut(s)	62, 161
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	2 cut(s)	60, 159
MboII	GAAGA	3 cut(s)	313, 403, 665
MhlI	GDGCHC	2 cut(s)	265, 448
MluCI	AATT	1 cut(s)	483
MlyI	GAGTC	3 cut(s)	33, 73, 232
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	9 cut(s)	14, 28, 64, 178, 264, 278, 389, 419, 654
MroI	TCCGGA	1 cut(s)	124
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	3 cut(s)	125, 157, 216
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeII	GATC	2 cut(s)	60, 159
NlaIII	CATG	2 cut(s)	328, 635
NlaIV	GGNNCC	2 cut(s)	112, 129
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	475, 592
NspI	RCATGY	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	635
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	399, 528
PkrI	GCNGC	5 cut(s)	224, 343, 388, 391, 430
PleI	GAGTC	3 cut(s)	32, 73, 232
PpsI	GAGTC	3 cut(s)	32, 73, 232
Psp6I	CCWGG	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	2 cut(s)	112, 129
PspPI	GGNCC	3 cut(s)	127, 185, 406
PstI	CTGCAG	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	389
SalI	GTCGAC	1 cut(s)	26
SatI	GCNGC	5 cut(s)	223, 342, 387, 390, 429
Sau3AI	GATC	2 cut(s)	60, 159
Sau96I	GGNCC	3 cut(s)	127, 185, 406
SchI	GAGTC	3 cut(s)	33, 73, 232
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	2 cut(s)	265, 448
SfcI	CTRYAG	2 cut(s)	390, 513
SinI	GGWCC	2 cut(s)	127, 185
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	1 cut(s)	483
SsiI	CCGC	3 cut(s)	5, 50, 188
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	17, 101
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	27, 602
TasI	AATT	1 cut(s)	483
TfiI	GAWTC	2 cut(s)	399, 528
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	475, 592
TseI	GCWGC	5 cut(s)	222, 341, 386, 389, 428
Tsp45I	GTSAC	2 cut(s)	475, 592
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	127, 185
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	1 cut(s)	635
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.