Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007453

Physical Location & Seq

Genomic Coordinates Reverse (-)

2014862 .. 2018826

Gene Structure 3965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02162.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGGTAGTGTAGTAGTACTAAGCAAAGCCAATGCCACCTTGAATTGGTGCGTCAACGCCTTTCTTCCAAGATACCCTCCTCCCCCTCCTCCTATTATATCTCTCCTTTCTTCCACTCCCACACTCTCTCGCTCTCTTCTCTCTACTAAAAGATTCTCAACCATGGATGGTTCTAAAGCTAGCCCAACGAAGGAGTTGCCCCTGGGAATAGATGAAACAACTGAGGAAGAATATGCTTCACAGTCTAGGTTACTTCAAGAATTCACTAATATAGCCAGCATTGACAAGGCATGGATAATACCTGGCAGTGGAAATGGCTCCCAGGCAATGTTCTCGTTTAGTCAACCAAACGTTATGGCAAACAAGAGCAGGAAATTTATTCTATCATCTCATATCTCGAAAGAAAGTAGCAAATTGGTGAACTTCCAATGGGGCCCATTTCCTATTGAGATGACGGGAGTCTCTGTAATTGTACCATCACCATCAAGTGCAAAGCTTCTTGTAGTTCGTAATCCTGAAAAAGACTCTCCCTGTCAATTCGAAATTTGGGGTCCAGCTCAAGTAGAAAAGGAATTCCATATTCCCCCAACTGTTCATGGCTCAGTATATACTGATGGCTGGTTTCAGGGAATTTCTTGGAACTCTGATGAAACTCTCATCGCTTATGTTGCTGAGGAGCCATCTCCCTCCAAGCCTACATTTACATTTCAGGGCTATAAGAAAGGTAGTTCCACTGATAAGGAATTTGGCAACTGGAAAGGCCAAGGGGAGTGGGAGGAGGAATGGGGGGAAACCTATGCTGGAAAAAGGCAACCTGCACTCTTTGTCATAAATGTTAACAGTGGAGAGACACGAGCTGTTAAAGGAATCGAAAAGCGTTTGAGTGTTGGCCAAGTTGTTTGGGCCCCACCAATTAGTGGATCCCATCAATATTTGGTTTTTGTTGGGTGGTCAGCAGATACCAGAAAGCTAGGTATGGTGTATTGTTATAACAGACCCTGTGCTTTGTATGCAGTTAAGGCACCACTTTATGGATCAGAAGCTGATGGACAAGAAATCAAAGATAATTCAACTGAAGATTGTCCTCTGGTAAATCTAACACAAAGCATTAGTAGCGCTTTCTTTCCAAGATTCAGCCCAGATGGCAAATTGCTTTTGTTTTTATCAGCAAGAAGTTCTGTGGATTCCGGGGCACATTCTGCTACAGATTCTCTTCACAAAATTGATTGGCCAGTGGATGGAGTGCCATGCTCATCTATGGAAGTTGTTGATGTGATTCCTGTTGTTATGTGTGCGGATGATGGTTGCTTCCCTCGGCTTTACTGTTTTCCTCACAGACCCATGACTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016787 GO:0017171 GO:0019538 GO:0022607 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0070008 GO:0070009 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PD40 Peptidase_S9

Protein Analysis

451

Amino Acids

49.49

Weight (kDa)

5.75

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APEH_N	PF19283	64 - 443	2.1e-202	Acylamino-acid-releasing enzyme, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14570
fragaria_vesca	FvH4_4g02060 FvH4_4g02162
malus_domestica	MD13G1203600.v1.1 MD16G1205300.v1.1 MD16G1205600.v1.1
prunus_persica	Prupe.1G026800_v2.0.a1
pyrus_communis	pycom13g17690 pycom16g17300 pycom16g17310
rosa_chinensis	RchiOBHm_Chr4g0389431 RchiOBHm_Chr4g0389461
rosa_laevigata	RLG00000009980 RLG00000009982
rosa_multiflora	Rmu_sc0002498.1_g000017
rosa_roxburghii	Rroxscaffold_5G00335440 Rroxscaffold_5G00335460
rosa_rugosa	Rorug03G0323200
rosa_samantha	Rh4AG027700 Rh4AG027800 Rh4BG020600 Rh4BG021000 Rh4DG021300 Rh4DG021400
rosa_wichuraiana	Rw4G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	990
Acc36I	ACCTGC	1 cut(s)	823
AccB1I	GGYRCC	1 cut(s)	1021
AccB7I	CCANNNNNTGG	3 cut(s)	917, 1031, 1238
AciI	CCGC	1 cut(s)	1295
AclI	AACGTT	1 cut(s)	351
AclWI	GGATC	3 cut(s)	915, 928, 1042
AcoI	YGGCCR	2 cut(s)	889, 1229
AcsI	RAATTY	6 cut(s)	260, 374, 543, 572, 630, 743
AcuI	CTGAAG	1 cut(s)	1095
AfaI	GTAC	2 cut(s)	18, 474
AfeI	AGCGCT	1 cut(s)	1117
AfiI	CCNNNNNNNGG	6 cut(s)	45, 190, 308, 917, 1031, 1238
AgsI	TTSAA	3 cut(s)	43, 257, 1071
AjnI	CCWGG	3 cut(s)	201, 301, 321
AluBI	AGCT	6 cut(s)	179, 496, 557, 857, 970, 1043
AluI	AGCT	6 cut(s)	179, 496, 557, 857, 970, 1043
Alw26I	GTCTC	2 cut(s)	466, 842
AlwI	GGATC	3 cut(s)	915, 928, 1042
AlwNI	CAGNNNCTG	2 cut(s)	999, 1043
Aor51HI	AGCGCT	1 cut(s)	1117
AoxI	GGCC	5 cut(s)	433, 760, 889, 903, 1229
ApaI	GGGCCC	2 cut(s)	437, 907
ApoI	RAATTY	6 cut(s)	260, 374, 543, 572, 630, 743
AspLEI	GCGC	1 cut(s)	1118
AspS9I	GGNCC	5 cut(s)	433, 434, 551, 903, 904
AsuC2I	CCSGG	1 cut(s)	1189
AsuHPI	GGTGA	2 cut(s)	430, 471
AsuII	TTCGAA	1 cut(s)	540
AsuNHI	GCTAGC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	551
BaeGI	GKGCMC	3 cut(s)	437, 907, 1195
BalI	TGGCCA	2 cut(s)	891, 1231
BamHI	GGATCC	1 cut(s)	920
BanI	GGYRCC	1 cut(s)	1021
BanII	GRGCYC	2 cut(s)	437, 907
BauI	CACGAG	1 cut(s)	852
BbvCI	CCTCAGC	1 cut(s)	672
BcgI	CGANNNNNNTGC	4 cut(s)	178, 212, 315, 349
BciT130I	CCWGG	3 cut(s)	203, 303, 323
BcnI	CCSGG	1 cut(s)	1189
BcoDI	GTCTC	2 cut(s)	466, 842
BfaI	CTAG	3 cut(s)	180, 246, 971
BfmI	CTRYAG	1 cut(s)	1203
BfoI	RGCGCY	1 cut(s)	1119
BfuAI	ACCTGC	1 cut(s)	823
BglI	GCCNNNNNGGC	1 cut(s)	1143
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	4 cut(s)	203, 303, 323, 1189
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	5 cut(s)	433, 434, 551, 903, 904
BmiI	GGNNCC	9 cut(s)	319, 434, 435, 552, 678, 905, 906, 922, 1023
BmrFI	CCNGG	4 cut(s)	203, 303, 323, 1189
BmtI	GCTAGC	1 cut(s)	183
BoxI	GACNNNNGTC	1 cut(s)	458
Bpu10I	CCTNAGC	1 cut(s)	672
Bpu14I	TTCGAA	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	543
BpuMI	CCSGG	1 cut(s)	1189
BsaJI	CCNNGG	7 cut(s)	162, 201, 202, 321, 763, 1188, 1313
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	6 cut(s)	45, 190, 308, 917, 1031, 1238
Bse1I	ACTGG	2 cut(s)	758, 1232
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	3 cut(s)	203, 303, 323
BseDI	CCNNGG	7 cut(s)	162, 201, 202, 321, 763, 1188, 1313
BseGI	GGATG	3 cut(s)	172, 1243, 1303
BseLI	CCNNNNNNNGG	6 cut(s)	45, 190, 308, 917, 1031, 1238
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	3 cut(s)	213, 615, 663
BseNI	ACTGG	2 cut(s)	758, 1232
BseRI	GAGGAG	4 cut(s)	69, 78, 689, 791
BseSI	GKGCMC	3 cut(s)	437, 907, 1195
BsgI	GTGCAG	1 cut(s)	801
BshFI	GGCC	5 cut(s)	435, 762, 891, 905, 1231
BshNI	GGYRCC	1 cut(s)	1021
BsiSI	CCGG	1 cut(s)	1188
BslI	CCNNNNNNNGG	6 cut(s)	45, 190, 308, 917, 1031, 1238
BsmAI	GTCTC	2 cut(s)	466, 842
BsnI	GGCC	5 cut(s)	435, 762, 891, 905, 1231
Bsp119I	TTCGAA	1 cut(s)	540
Bsp120I	GGGCCC	2 cut(s)	433, 903
Bsp1286I	GDGCHC	3 cut(s)	437, 907, 1195
Bsp143I	GATC	2 cut(s)	920, 1034
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	1 cut(s)	1295
BspANI	GGCC	5 cut(s)	435, 762, 891, 905, 1231
BspCNI	CTCAG	3 cut(s)	214, 614, 664
BspLI	GGNNCC	9 cut(s)	319, 434, 435, 552, 678, 905, 906, 922, 1023
BspMI	ACCTGC	1 cut(s)	823
BspOI	GCTAGC	1 cut(s)	183
BspPI	GGATC	3 cut(s)	915, 928, 1042
BspT104I	TTCGAA	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	1021
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	758, 1232
BssECI	CCNNGG	7 cut(s)	162, 201, 202, 321, 763, 1188, 1313
BssMI	GATC	2 cut(s)	920, 1034
BssSI	CACGAG	1 cut(s)	852
BssT1I	CCWWGG	2 cut(s)	162, 763
Bst2BI	CACGAG	1 cut(s)	852
Bst2UI	CCWGG	3 cut(s)	203, 303, 323
Bst4CI	ACNGT	4 cut(s)	243, 592, 842, 1325
Bst6I	CTCTTC	2 cut(s)	141, 1218
BstAPI	GCANNNNNTGC	1 cut(s)	1199
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	181, 277
BstDEI	CTNAG	4 cut(s)	20, 222, 601, 672
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	3 cut(s)	172, 1243, 1303
BstH2I	RGCGCY	1 cut(s)	1119
BstHHI	GCGC	1 cut(s)	1118
BstKTI	GATC	2 cut(s)	923, 1037
BstMAI	GTCTC	2 cut(s)	466, 842
BstMBI	GATC	2 cut(s)	920, 1034
BstMWI	GCNNNNNNNGC	6 cut(s)	668, 1010, 1019, 1113, 1143, 1199
BstNI	CCWGG	3 cut(s)	203, 303, 323
BstPAI	GACNNNNGTC	1 cut(s)	458
BstSCI	CCNGG	4 cut(s)	201, 301, 321, 1187
BstSFI	CTRYAG	1 cut(s)	1203
BstSLI	GKGCMC	3 cut(s)	437, 907, 1195
BstX2I	RGATCY	1 cut(s)	920
BstYI	RGATCY	1 cut(s)	920
BsuRI	GGCC	5 cut(s)	435, 762, 891, 905, 1231
BtgI	CCRYGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	643
BtsCI	GGATG	3 cut(s)	172, 1243, 1303
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	4 cut(s)	313, 732, 847, 1239
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	2 cut(s)	181, 277
CaiI	CAGNNNCTG	2 cut(s)	999, 1043
CfoI	GCGC	1 cut(s)	1118
Cfr13I	GGNCC	5 cut(s)	433, 434, 551, 903, 904
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	17, 473
CspCI	CAANNNNNGTGG	2 cut(s)	752, 787
CviAII	CATG	5 cut(s)	163, 291, 596, 1248, 1342
CviQI	GTAC	2 cut(s)	17, 473
DdeI	CTNAG	4 cut(s)	20, 222, 601, 672
DpnI	GATC	2 cut(s)	922, 1036
DpnII	GATC	2 cut(s)	920, 1034
EaeI	YGGCCR	2 cut(s)	889, 1229
Eam1104I	CTCTTC	2 cut(s)	141, 1218
EarI	CTCTTC	2 cut(s)	141, 1218
Eco130I	CCWWGG	2 cut(s)	162, 763
Eco24I	GRGCYC	2 cut(s)	437, 907
Eco47I	GGWCC	1 cut(s)	551
Eco47III	AGCGCT	1 cut(s)	1117
Eco57I	CTGAAG	1 cut(s)	1095
EcoO109I	RGGNCCY	2 cut(s)	433, 904
EcoRI	GAATTC	2 cut(s)	260, 572
EcoRII	CCWGG	3 cut(s)	201, 301, 321
EcoT14I	CCWWGG	2 cut(s)	162, 763
EcoT38I	GRGCYC	2 cut(s)	437, 907
ErhI	CCWWGG	2 cut(s)	162, 763
FaeI	CATG	5 cut(s)	166, 294, 599, 1251, 1345
FatI	CATG	5 cut(s)	162, 290, 595, 1247, 1341
FokI	GGATG	3 cut(s)	179, 1250, 1310
FriOI	GRGCYC	2 cut(s)	437, 907
FspBI	CTAG	3 cut(s)	180, 246, 971
GlaI	GCGC	1 cut(s)	1117
HaeII	RGCGCY	1 cut(s)	1119
HaeIII	GGCC	5 cut(s)	435, 762, 891, 905, 1231
HapII	CCGG	1 cut(s)	1188
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	1118
Hin1II	CATG	5 cut(s)	166, 294, 599, 1251, 1345
Hin6I	GCGC	1 cut(s)	1116
HinP1I	GCGC	1 cut(s)	1116
HincII	GTYRAC	3 cut(s)	55, 344, 838
HindII	GTYRAC	3 cut(s)	55, 344, 838
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	8 cut(s)	153, 459, 524, 867, 1131, 1184, 1208, 1276
HpaI	GTTAAC	1 cut(s)	838
HpaII	CCGG	1 cut(s)	1188
HphI	GGTGA	2 cut(s)	430, 471
Hpy166II	GTNNAC	4 cut(s)	55, 344, 421, 838
Hpy188I	TCNGA	3 cut(s)	646, 1039, 1352
Hpy188III	TCNNGA	3 cut(s)	257, 397, 515
Hpy8I	GTNNAC	4 cut(s)	55, 344, 421, 838
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	4 cut(s)	243, 592, 842, 1325
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	3 cut(s)	491, 818, 1013
HpyF10VI	GCNNNNNNNGC	6 cut(s)	668, 1010, 1019, 1113, 1143, 1199
HpyF3I	CTNAG	4 cut(s)	20, 222, 601, 672
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	5 cut(s)	166, 294, 599, 1251, 1345
HspAI	GCGC	1 cut(s)	1116
KspAI	GTTAAC	1 cut(s)	838
Kzo9I	GATC	2 cut(s)	920, 1034
LmnI	GCTCC	2 cut(s)	323, 676
MaeI	CTAG	3 cut(s)	180, 246, 971
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	2 cut(s)	922, 1036
MboI	GATC	2 cut(s)	920, 1034
MboII	GAAGA	6 cut(s)	56, 102, 128, 239, 1088, 1205
MflI	RGATCY	1 cut(s)	920
MhlI	GDGCHC	3 cut(s)	437, 907, 1195
MlsI	TGGCCA	2 cut(s)	891, 1231
MluNI	TGGCCA	2 cut(s)	891, 1231
MlyI	GAGTC	2 cut(s)	468, 518
Mox20I	TGGCCA	2 cut(s)	891, 1231
MscI	TGGCCA	2 cut(s)	891, 1231
MseI	TTAA	3 cut(s)	837, 861, 1017
Msp20I	TGGCCA	2 cut(s)	891, 1231
MspI	CCGG	1 cut(s)	1188
MspR9I	CCNGG	4 cut(s)	203, 303, 323, 1189
MvaI	CCWGG	3 cut(s)	203, 303, 323
MwoI	GCNNNNNNNGC	6 cut(s)	668, 1010, 1019, 1113, 1143, 1199
NciI	CCSGG	1 cut(s)	1189
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	2 cut(s)	920, 1034
NheI	GCTAGC	1 cut(s)	179
NlaIII	CATG	5 cut(s)	166, 294, 599, 1251, 1345
NlaIV	GGNNCC	9 cut(s)	319, 434, 435, 552, 678, 905, 906, 922, 1023
NmeAIII	GCCGAG	1 cut(s)	1294
NspV	TTCGAA	1 cut(s)	540
PasI	CCCWGGG	1 cut(s)	202
PfeI	GAWTC	6 cut(s)	153, 867, 1131, 1184, 1208, 1276
PflMI	CCANNNNNTGG	3 cut(s)	917, 1031, 1238
PleI	GAGTC	2 cut(s)	467, 518
PpsI	GAGTC	2 cut(s)	467, 518
PshAI	GACNNNNGTC	1 cut(s)	458
PsiI	TTATAA	1 cut(s)	990
Psp1406I	AACGTT	1 cut(s)	351
Psp6I	CCWGG	3 cut(s)	201, 301, 321
PspGI	CCWGG	3 cut(s)	201, 301, 321
PspN4I	GGNNCC	9 cut(s)	319, 434, 435, 552, 678, 905, 906, 922, 1023
PspOMI	GGGCCC	2 cut(s)	433, 903
PspPI	GGNCC	5 cut(s)	433, 434, 551, 903, 904
PstNI	CAGNNNCTG	2 cut(s)	999, 1043
PsuI	RGATCY	1 cut(s)	920
RsaI	GTAC	2 cut(s)	18, 474
RsaNI	GTAC	2 cut(s)	17, 473
SaqAI	TTAA	3 cut(s)	837, 861, 1017
Sau3AI	GATC	2 cut(s)	920, 1034
Sau96I	GGNCC	5 cut(s)	433, 434, 551, 903, 904
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	2 cut(s)	468, 518
ScrFI	CCNGG	4 cut(s)	203, 303, 323, 1189
SduI	GDGCHC	3 cut(s)	437, 907, 1195
SfcI	CTRYAG	1 cut(s)	1203
SfuI	TTCGAA	1 cut(s)	540
SinI	GGWCC	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
SsiI	CCGC	1 cut(s)	1295
SspI	AATATT	1 cut(s)	932
SspMI	CTAG	3 cut(s)	180, 246, 971
StyD4I	CCNGG	4 cut(s)	201, 301, 321, 1187
StyI	CCWWGG	2 cut(s)	162, 763
TaaI	ACNGT	4 cut(s)	243, 592, 842, 1325
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	3 cut(s)	398, 540, 870
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	6 cut(s)	153, 867, 1131, 1184, 1208, 1276
Tru1I	TTAA	3 cut(s)	837, 861, 1017
Tru9I	TTAA	3 cut(s)	837, 861, 1017
TscAI	CASTG	4 cut(s)	313, 739, 847, 1239
TspDTI	ATGAA	3 cut(s)	228, 584, 663
TspRI	CASTG	4 cut(s)	313, 739, 847, 1239
Van91I	CCANNNNNTGG	3 cut(s)	917, 1031, 1238
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	6 cut(s)	260, 374, 543, 572, 630, 743
XspI	CTAG	3 cut(s)	180, 246, 971
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.