Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007453

Physical Location & Seq

Genomic Coordinates Reverse (-)

13530743 .. 13533332

Gene Structure 2590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAGCAGTGCATTATTAAGCAGAACCACCTCGGCTTGGTGCGTCACCTTGCTTCGTCCGATTCCAAGATTCCTTCCTCCTCCACTTCCGATTTTATCTCACATTCCCACTCTTCTTCTCACTCCGAGGAGCAGCAGTTGCAGACCCTTCTATTTTCTCACTACTTTTTCTCTTTCTAAAAGATTGCCTACACTATTAGCCATGGGCAGTTCTAAAGATGGTCCATTGAAGGAGATGCCTCTGGGGTTAGATGCAACAACTGAGGAAGAATATGCATCACAGTCTAGGTTACTTCAAGACTTCACCAGTATTTCCAGCATTGACAAGGCATGGACTTTTAAATCTGACAGCGGAATTGAGTCTCATGCAATGTTTTCAATTAGTCAACCGAATCTTTTGGCAAACAAGAGGAAGAAATTCATTCTTTCCTCTCATATTTCAAGAGAAAGTAACAATTCTATAAACTTCCAATGGTCCCCATTCCCTGTTGAGATGATGGGAGTCTCTGTATTTGTTCCATCCCCGTCCGGTGCAAAGCTTCTTGTAGTTCGGAATCCCGAGAATGAATCTCCCTGTCAATTTGAAATTTGGGGTCAAGGTCAAGTGGAGAAAGAATTCCACATCCCCCAATCTGTTCATGGTTCAGTATATGCTGATGAATGGTTTCAAGGAATTTCTTGGAATGCTGATGAAACTCTCATTGCTTATGTTGCTGAGGAACCAGCTCCCTCCAAGCCCACATTTACAGGTCAGGGCTACAAGAATGTTAGTTCCACTGATAAGGACTTTGGTAACTGGAAAGGTCATGGGGATTGGAAGGAAGAATGGGGGGAAACGTATGCTGGAAAAAGGCAGCCTGCACTTTTTGTCATCAATATTAACAGTGGAGAGGCCCAAGCTGTCAAAGGAATTGAAAAGTCTTTGAGTGTTGGTCAAGTTGTATGGGCGCCACCAGTTAAAGGCTCACAACAATCTTTGGTTTTTGTTGGGTGGTCTGAAGGTATCAGAAAGCTGGGTATCAAGTACTGCATTAATAGGCCCTGTGCATTGTATGCAGTCAGGGCACCAAATTGTGAATCAGAAACCGATGGATCTGAACTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016787 GO:0017171 GO:0019538 GO:0022607 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0070008 GO:0070009 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PD40 Peptidase_S9

Protein Analysis

369

Amino Acids

40.76

Weight (kDa)

6.62

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14570
fragaria_vesca	FvH4_4g02060 FvH4_4g02162
malus_domestica	MD13G1203600.v1.1 MD16G1205300.v1.1 MD16G1205600.v1.1
prunus_persica	Prupe.1G026800_v2.0.a1
pyrus_communis	pycom13g17690 pycom16g17300 pycom16g17310
rosa_chinensis	RchiOBHm_Chr4g0389431 RchiOBHm_Chr4g0389461
rosa_laevigata	RLG00000009980 RLG00000009982
rosa_multiflora	Rmu_sc0002498.1_g000017
rosa_roxburghii	Rroxscaffold_5G00335440 Rroxscaffold_5G00335460
rosa_rugosa	Rorug03G0323200
rosa_samantha	Rh4AG027700 Rh4AG027800 Rh4BG020600 Rh4BG021000 Rh4DG021300 Rh4DG021400
rosa_wichuraiana	Rw4G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	946, 1063
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	1 cut(s)	1099
AcsI	RAATTY	4 cut(s)	416, 585, 614, 672
AcuI	CTGAAG	1 cut(s)	1017
AcyI	GRCGYC	1 cut(s)	947
AfaI	GTAC	1 cut(s)	1025
AfiI	CCNNNNNNNGG	2 cut(s)	36, 959
AgsI	TTSAA	7 cut(s)	229, 296, 378, 441, 584, 668, 914
AluBI	AGCT	4 cut(s)	538, 725, 899, 1012
AluI	AGCT	4 cut(s)	538, 725, 899, 1012
Alw26I	GTCTC	2 cut(s)	366, 508
AlwI	GGATC	1 cut(s)	1099
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	2 cut(s)	891, 1037
ApeKI	GCWGC	2 cut(s)	132, 853
ApoI	RAATTY	4 cut(s)	416, 585, 614, 672
AseI	ATTAAT	1 cut(s)	1032
Asp700I	GAANNNNTTC	3 cut(s)	416, 614, 663
AspLEI	GCGC	1 cut(s)	949
AspS9I	GGNCC	4 cut(s)	221, 474, 892, 1038
AsuHPI	GGTGA	2 cut(s)	37, 295
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	2 cut(s)	221, 474
BaeGI	GKGCMC	1 cut(s)	1066
BanI	GGYRCC	2 cut(s)	946, 1063
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	144, 865
BccI	CCATC	4 cut(s)	212, 490, 526, 1082
BcoDI	GTCTC	2 cut(s)	366, 508
BfaI	CTAG	2 cut(s)	285, 1105
BfoI	RGCGCY	1 cut(s)	950
BisI	GCNGC	2 cut(s)	133, 854
BlsI	GCNGC	2 cut(s)	134, 855
BmcAI	AGTACT	1 cut(s)	1025
Bme18I	GGWCC	2 cut(s)	221, 474
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	4 cut(s)	221, 474, 892, 1038
BmiI	GGNNCC	4 cut(s)	476, 720, 948, 1065
BmsI	GCATC	3 cut(s)	225, 241, 284
Bpu10I	CCTNAGC	1 cut(s)	714
BsaHI	GRCGYC	1 cut(s)	947
BsaJI	CCNNGG	3 cut(s)	30, 125, 201
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 959
Bse1I	ACTGG	3 cut(s)	306, 800, 953
Bse3DI	GCAATG	2 cut(s)	375, 699
BseDI	CCNNGG	3 cut(s)	30, 125, 201
BseGI	GGATG	2 cut(s)	518, 621
BseLI	CCNNNNNNNGG	2 cut(s)	36, 959
BseMI	GCAATG	2 cut(s)	375, 699
BseMII	CTCAG	2 cut(s)	252, 705
BseNI	ACTGG	3 cut(s)	306, 800, 953
BseRI	GAGGAG	2 cut(s)	69, 142
BseSI	GKGCMC	1 cut(s)	1066
BseXI	GCAGC	2 cut(s)	144, 865
BseYI	CCCAGC	1 cut(s)	1012
BsgI	GTGCAG	1 cut(s)	843
BshFI	GGCC	2 cut(s)	893, 1039
BshNI	GGYRCC	2 cut(s)	946, 1063
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	36, 959
BsmAI	GTCTC	2 cut(s)	366, 508
BsmFI	GGGAC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	2 cut(s)	893, 1039
BsoBI	CYCGRG	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	1066
Bsp143I	GATC	1 cut(s)	1091
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	2 cut(s)	893, 1039
BspCNI	CTCAG	2 cut(s)	253, 706
BspLI	GGNNCC	4 cut(s)	476, 720, 948, 1065
BspPI	GGATC	1 cut(s)	1099
BspT107I	GGYRCC	2 cut(s)	946, 1063
BsrDI	GCAATG	2 cut(s)	375, 699
BsrI	ACTGG	3 cut(s)	306, 800, 953
BssECI	CCNNGG	3 cut(s)	30, 125, 201
BssMI	GATC	1 cut(s)	1091
BssNI	GRCGYC	1 cut(s)	947
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	282, 884
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	947
BstAPI	GCANNNNNTGC	2 cut(s)	138, 1052
BstC8I	GCNNGC	1 cut(s)	858
BstDEI	CTNAG	2 cut(s)	261, 714
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	518, 621
BstH2I	RGCGCY	1 cut(s)	950
BstHHI	GCGC	1 cut(s)	949
BstKTI	GATC	1 cut(s)	1094
BstMAI	GTCTC	2 cut(s)	366, 508
BstMBI	GATC	1 cut(s)	1091
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 710, 1052, 1061
BstSLI	GKGCMC	1 cut(s)	1066
BstV1I	GCAGC	2 cut(s)	144, 865
BstX2I	RGATCY	1 cut(s)	1091
BstYI	RGATCY	1 cut(s)	1091
BsuRI	GGCC	2 cut(s)	893, 1039
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	518, 621
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	3 cut(s)	13, 774, 889
Cac8I	GCNNGC	1 cut(s)	858
CfoI	GCGC	1 cut(s)	949
Cfr13I	GGNCC	4 cut(s)	221, 474, 892, 1038
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	1024
CviAII	CATG	5 cut(s)	202, 330, 365, 638, 806
CviQI	GTAC	1 cut(s)	1024
DdeI	CTNAG	2 cut(s)	261, 714
DinI	GGCGCC	1 cut(s)	948
DpnI	GATC	1 cut(s)	1093
DpnII	GATC	1 cut(s)	1091
DraI	TTTAAA	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	221, 474
Eco57I	CTGAAG	1 cut(s)	1017
Eco88I	CYCGRG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	1038
EcoRI	GAATTC	1 cut(s)	614
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	277
EgeI	GGCGCC	1 cut(s)	948
EheI	GGCGCC	1 cut(s)	948
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	5 cut(s)	205, 333, 368, 641, 809
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	5 cut(s)	201, 329, 364, 637, 805
Fnu4HI	GCNGC	2 cut(s)	133, 854
FokI	GGATG	2 cut(s)	505, 608
Fsp4HI	GCNGC	2 cut(s)	133, 854
FspBI	CTAG	2 cut(s)	285, 1105
GlaI	GCGC	1 cut(s)	948
GluI	GCNGC	2 cut(s)	133, 854
GsaI	CCCAGC	1 cut(s)	1016
HaeII	RGCGCY	1 cut(s)	950
HaeIII	GGCC	2 cut(s)	893, 1039
HapII	CCGG	1 cut(s)	528
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	949
Hin1I	GRCGYC	1 cut(s)	947
Hin1II	CATG	5 cut(s)	205, 333, 368, 641, 809
Hin6I	GCGC	1 cut(s)	947
HinP1I	GCGC	1 cut(s)	947
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	8 cut(s)	61, 69, 359, 391, 501, 553, 566, 1076
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	2 cut(s)	37, 295
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	9 cut(s)	60, 90, 126, 346, 552, 997, 1007, 1081, 1096
Hpy188III	TCNNGA	3 cut(s)	296, 441, 557
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	5 cut(s)	83, 157, 223, 811, 992
HpyCH4III	ACNGT	2 cut(s)	282, 884
HpyCH4IV	ACGT	1 cut(s)	836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 710, 1052, 1061
HpyF3I	CTNAG	2 cut(s)	261, 714
HpySE526I	ACGT	1 cut(s)	836
Hsp92I	GRCGYC	1 cut(s)	947
Hsp92II	CATG	5 cut(s)	205, 333, 368, 641, 809
HspAI	GCGC	1 cut(s)	947
KasI	GGCGCC	1 cut(s)	946
Kzo9I	GATC	1 cut(s)	1091
LmnI	GCTCC	2 cut(s)	129, 730
Lsp1109I	GCAGC	2 cut(s)	144, 865
LweI	GCATC	3 cut(s)	225, 241, 284
MaeI	CTAG	2 cut(s)	285, 1105
MaeII	ACGT	1 cut(s)	836
MaeIII	GTNAC	4 cut(s)	43, 288, 449, 791
MalI	GATC	1 cut(s)	1093
MboI	GATC	1 cut(s)	1091
MboII	GAAGA	5 cut(s)	104, 107, 278, 424, 833
MflI	RGATCY	1 cut(s)	1091
MhlI	GDGCHC	1 cut(s)	1066
Mly113I	GGCGCC	1 cut(s)	947
MlyI	GAGTC	2 cut(s)	368, 510
Mph1103I	ATGCAT	1 cut(s)	277
MroXI	GAANNNNTTC	3 cut(s)	416, 614, 663
MseI	TTAA	5 cut(s)	17, 339, 879, 957, 1032
MspA1I	CMGCKG	1 cut(s)	351
MspI	CCGG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	688
MwoI	GCNNNNNNNGC	4 cut(s)	138, 710, 1052, 1061
NarI	GGCGCC	1 cut(s)	947
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	1 cut(s)	1091
NlaIII	CATG	5 cut(s)	205, 333, 368, 641, 809
NlaIV	GGNNCC	4 cut(s)	476, 720, 948, 1065
NmeAIII	GCCGAG	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	277
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	3 cut(s)	416, 614, 663
PfeI	GAWTC	6 cut(s)	61, 69, 391, 553, 566, 1076
PkrI	GCNGC	2 cut(s)	134, 855
PleI	GAGTC	2 cut(s)	367, 509
PluTI	GGCGCC	1 cut(s)	950
PpsI	GAGTC	2 cut(s)	367, 509
PshBI	ATTAAT	1 cut(s)	1032
PspFI	CCCAGC	1 cut(s)	1012
PspN4I	GGNNCC	4 cut(s)	476, 720, 948, 1065
PspPI	GGNCC	4 cut(s)	221, 474, 892, 1038
PsuI	RGATCY	1 cut(s)	1091
RsaI	GTAC	1 cut(s)	1025
RsaNI	GTAC	1 cut(s)	1024
SaqAI	TTAA	5 cut(s)	17, 339, 879, 957, 1032
SatI	GCNGC	2 cut(s)	133, 854
Sau3AI	GATC	1 cut(s)	1091
Sau96I	GGNCC	4 cut(s)	221, 474, 892, 1038
ScaI	AGTACT	1 cut(s)	1025
SchI	GAGTC	2 cut(s)	368, 510
SduI	GDGCHC	1 cut(s)	1066
SfaNI	GCATC	3 cut(s)	225, 241, 284
SfoI	GGCGCC	1 cut(s)	948
SinI	GGWCC	2 cut(s)	221, 474
SsiI	CCGC	1 cut(s)	351
SspDI	GGCGCC	1 cut(s)	946
SspI	AATATT	1 cut(s)	877
SspMI	CTAG	2 cut(s)	285, 1105
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	282, 884
TaiI	ACGT	1 cut(s)	839
TatI	WGTACW	1 cut(s)	1023
TfiI	GAWTC	6 cut(s)	61, 69, 391, 553, 566, 1076
Tru1I	TTAA	5 cut(s)	17, 339, 879, 957, 1032
Tru9I	TTAA	5 cut(s)	17, 339, 879, 957, 1032
TscAI	CASTG	3 cut(s)	13, 781, 889
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	132, 853
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	5 cut(s)	409, 579, 626, 672, 705
TspRI	CASTG	3 cut(s)	13, 781, 889
VpaK11BI	GGWCC	2 cut(s)	221, 474
VspI	ATTAAT	1 cut(s)	1032
XapI	RAATTY	4 cut(s)	416, 585, 614, 672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XmnI	GAANNNNTTC	3 cut(s)	416, 614, 663
XspI	CTAG	2 cut(s)	285, 1105
ZrmI	AGTACT	1 cut(s)	1025
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.