Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007453

Physical Location & Seq

Genomic Coordinates Reverse (-)

5615333 .. 5627740

Gene Structure 12408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG027800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2340 bp

ATGGATGGATCTAAAGCTGTCCCATTGAAGGAGATGCCTCTGGGAATTGATGCAACGACTGAGGATGAATATGCATTGCAGTCTAGATTACTGCAAGAGTTCACCAGTGTATCCAACTTTGACAAGGCATGGATTAAATCTGACAGTAGAAATGGCTCCCAGCAGGCAATGTCTTCAATTAGTCAACCAAACCTTTTGGCAAACAAGAGGAGGAAATTTATTCTATCCTCTCACATTTCGAAAGGAAGTAGCAACTCAGTAAAGTTCGAATGGGCCCCATTTCCTGTTGAGATGACAGGAGTCTCTGTAATTGTTCCATCACCGTCAGGTTCAAAGCTTCTTGTAGTTCGGAATCCTGAAGCCGAAGCTCCCTGTCAATTTGAAATTTGGGGTCCAGCTCAAGTGGAAAAAGAATTCCATATTCCCCAGTCTGTTCATGGCTCAGTATATGCTGATGAATGGTTTCAGGGAATTTCTTGGAACTGTGATGAAACTCTCATCGCTTATGTTGCTGAGGAGCCATCTCCTCCCAAGCCAACATTTACATGTCAGGGCTACAAGAAAGTTAGTACCATTGATAAGGACTCTGCCAACTGGAAAGGACAAGGACAATGGGAGGAGGAATGGGGGGAAACCTATGTTGGAAAAAGGCACCCTGCACTTTTTGTTATCAACATTAACAGTGGAGACACACAAGCTGTTAAAGGAATTGAAAAGCATTTGAGTCTTGGCCAAGTTGTGTGGGCAGCACCAGTTAGAGGATCACATCAGTATTTGGTTTTTGTTGGGTGGTCAGCAGATACCAGAAAGCTCGGAATTAAGTACTGTTTTAACAGGCCCTGTGCTTTGTATGCGGTTAAGGCGCCACTTTATGGATCAGAAACATATGATATACTTGGTGAATTCTTTAACAGTTCCAGAGATAATTCAATTAAAGATTCTCCTGTGGTAAATCTAACTGAAAGCATAAGTAGTGCCTACCATCCACGTTTCAGTCCAGATGGAAAATTGCTTTTGTTTTTATCTTCAAGAAGTGCTGTGGATTCTGGGGCACATTCTGCAACAGATTCTCTGCACAGAATTGATTGGCCAATAGATGGGGTGCCATGCTCATCTTTTATAATTTTTGATGTGATTCCTGTTGTAATGTGTGCGGATGATGGTTGCTTCCCTGGCCTTTACTGTTCAAGTCTCCTTAGTAATCCATGGTTTTCTGATGGATGCACGATGGTCGTATCTTCCTTCTGGGGCAGCTGTCAAGTAGTACTTTCTGTCAATGTGTTGAGTGGAGAGGTACTACGGATCAGCCCTACTAATTCAACCTTTTCATGGAATGTTCTTTCATTGGATGGGGACAACATCATTGCTGTGTCTAGCAGTCTAGTAAATGTTCCACGCATCAAGTATGGTTATCTTGTTGATAGACAGAGGAAAAGCACTGCATGGAATTGGTTAGATGTACCAAGCCCCACAAACAAATGCTCTGAGAAGGTGGAATCTTTGCTCTCATCTGTTCAGTTCAGTATAATGAACATTCCTGTCAGGGATGTTTCTGATAGCCTAACAAAAGGTGCTGGAAAACCTTTTGAGGCTATATTTGTGTCTTCCAAAACTAAAAGAAGTGATTCATTTGATCCATTAATTGTATTCCTTCATGGAGGCCCGCATACTGTTTCTTTGTCAAGCTTTTCAAAGTCCTTAGCATTTCTCTCTACAATTGGGTTTAACTTGTTACTTGTAAATTATAGAGGTTCACTGGGATTTGGTGAGGAAGCACTTCAATCTCTTCCAGGGAATATTGGCTCCCAGGATGTGAATGATGTACTTGTGGCTGTTGATCATGTCATTGACATGGGGCTCGCTAGTCCATCTAAAATCGCCATTCTTGGTGGTTCTCATGGTGGCTTTTTAACAACTCACTTAATTGGTCAGGCACCCGAGAAGTTTTTTGTGGCAGCTACAAGGAATCCTGCATGTAACCTGGCATTGATGGTTGGTACAACTGACATCCCTGATTGGTGCTATGTGGAGGCCTATGGAATTGAGGGCAAAAATAGATATACAGAAGCACCTTCAGCTGAGCATCTGGCTCTCTTTCACAGCAAGTCTCCTATTTCACAAATTTCAAAGGCCAAAACACCCACCCTTTTTCTCTTGGGTGCTCAAGATATTCGCCTTCCAATTTGTAGCGGATTGCAATATGCTCGGGCATTAAAGGAAAAGGGAGTTGCTGTGAAAGTCATTGTGTTCCCTAATGACACCCATCCAATTGACAAGCCGCAATCCGACTTTGAGAGCTTTCTAAATATCGGTGTGTGGTTCAAGAGGTATTTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016787 GO:0017171 GO:0019538 GO:0022607 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0070008 GO:0070009 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PD40 Peptidase_S9

Protein Analysis

779

Amino Acids

85.35

Weight (kDa)

6.05

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APEH_N	PF19283	10 - 499	4.6e-244	Acylamino-acid-releasing enzyme, N-terminal domain
COesterase	PF00135	532 - 641	1.8e-06	Carboxylesterase family
BD-FAE	PF20434	543 - 733	7.3e-06	BD-FAE
Peptidase_S9	PF00326	562 - 778	1.7e-33	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14570
fragaria_vesca	FvH4_4g02060 FvH4_4g02162
malus_domestica	MD13G1203600.v1.1 MD16G1205300.v1.1 MD16G1205600.v1.1
prunus_persica	Prupe.1G026800_v2.0.a1
pyrus_communis	pycom13g17690 pycom16g17300 pycom16g17310
rosa_chinensis	RchiOBHm_Chr4g0389431 RchiOBHm_Chr4g0389461
rosa_laevigata	RLG00000009980 RLG00000009982
rosa_multiflora	Rmu_sc0002498.1_g000017
rosa_roxburghii	Rroxscaffold_5G00335440 Rroxscaffold_5G00335460
rosa_rugosa	Rorug03G0323200
rosa_samantha	Rh4AG027700 Rh4AG027800 Rh4BG020600 Rh4BG021000 Rh4DG021300 Rh4DG021400
rosa_wichuraiana	Rw4G002010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
AccB1I	GGYRCC	4 cut(s)	651, 862, 1102, 1933
AccB7I	CCANNNNNTGG	2 cut(s)	872, 1097
AciI	CCGC	5 cut(s)	854, 1154, 1664, 2190, 2279
AclWI	GGATC	5 cut(s)	16, 769, 883, 1310, 1628
AcoI	YGGCCR	2 cut(s)	730, 1088
AcsI	RAATTY	6 cut(s)	215, 384, 413, 471, 902, 2121
AcuI	CTGAAG	2 cut(s)	378, 2058
AcyI	GRCGYC	1 cut(s)	863
AfaI	GTAC	7 cut(s)	571, 824, 1266, 1296, 1461, 1824, 1999
AfiI	CCNNNNNNNGG	5 cut(s)	28, 758, 872, 1097, 1329
AflIII	ACRYGT	1 cut(s)	545
AjnI	CCWGG	4 cut(s)	1171, 1789, 1806, 1980
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
Alw21I	GWGCWC	1 cut(s)	2164
Alw26I	GTCTC	4 cut(s)	307, 681, 1196, 2112
AlwI	GGATC	5 cut(s)	16, 769, 883, 1310, 1628
AlwNI	CAGNNNCTG	1 cut(s)	840
Ama87I	CYCGRG	2 cut(s)	1937, 2205
AoxI	GGCC	8 cut(s)	273, 730, 836, 1088, 1174, 1660, 2031, 2130
ApaI	GGGCCC	1 cut(s)	277
ApeKI	GCWGC	3 cut(s)	746, 1251, 1955
ApoI	RAATTY	6 cut(s)	215, 384, 413, 471, 902, 2121
AseI	ATTAAT	1 cut(s)	1640
Asp700I	GAANNNNTTC	3 cut(s)	462, 1624, 1776
AspLEI	GCGC	1 cut(s)	865
AspS9I	GGNCC	5 cut(s)	273, 274, 392, 837, 1661
AsuHPI	GGTGA	4 cut(s)	94, 312, 911, 1778
AsuII	TTCGAA	2 cut(s)	239, 267
AvaI	CYCGRG	2 cut(s)	1937, 2205
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	2 cut(s)	277, 1054
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BalI	TGGCCA	2 cut(s)	732, 1090
BanI	GGYRCC	4 cut(s)	651, 862, 1102, 1933
BanII	GRGCYC	2 cut(s)	277, 1860
BbsI	GAAGAC	2 cut(s)	165, 1596
Bbv12I	GWGCWC	1 cut(s)	2164
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	758, 1263, 1967
BcgI	CGANNNNNNTGC	4 cut(s)	1213, 1247, 2186, 2220
BciT130I	CCWGG	4 cut(s)	1173, 1791, 1808, 1982
BciVI	GTATCC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	1837
BcoDI	GTCTC	4 cut(s)	307, 681, 1196, 2112
BfaI	CTAG	4 cut(s)	84, 1374, 1382, 1863
BfoI	RGCGCY	1 cut(s)	866
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	4 cut(s)	747, 1252, 1956, 2279
BlpI	GCTNAGC	1 cut(s)	2079
BlsI	GCNGC	4 cut(s)	748, 1253, 1957, 2280
BmcAI	AGTACT	2 cut(s)	824, 1266
Bme1390I	CCNGG	4 cut(s)	1173, 1791, 1808, 1982
Bme18I	GGWCC	1 cut(s)	392
BmeT110I	CYCGRG	2 cut(s)	1937, 2205
BmgT120I	GGNCC	5 cut(s)	273, 274, 392, 837, 1661
BmrFI	CCNGG	4 cut(s)	1173, 1791, 1808, 1982
BmrI	ACTGGG	2 cut(s)	421, 1766
BmsI	GCATC	5 cut(s)	24, 40, 1211, 1407, 2092
BmuI	ACTGGG	2 cut(s)	421, 1766
BoxI	GACNNNNGTC	1 cut(s)	299
BpiI	GAAGAC	2 cut(s)	165, 1596
Bpu10I	CCTNAGC	2 cut(s)	513, 1699
Bpu1102I	GCTNAGC	1 cut(s)	2079
Bpu14I	TTCGAA	2 cut(s)	239, 267
BpuEI	CTTGAG	2 cut(s)	384, 2148
BsaHI	GRCGYC	1 cut(s)	863
BsaJI	CCNNGG	4 cut(s)	1171, 1205, 1790, 1806
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 321, 2217, 2247
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 758, 872, 1097, 1329
Bse1I	ACTGG	5 cut(s)	105, 427, 599, 752, 1761
Bse3DI	GCAATG	3 cut(s)	74, 174, 1362
BseBI	CCWGG	4 cut(s)	1173, 1791, 1808, 1982
BseDI	CCNNGG	4 cut(s)	1171, 1205, 1790, 1806
BseLI	CCNNNNNNNGG	5 cut(s)	28, 758, 872, 1097, 1329
BseMI	GCAATG	3 cut(s)	74, 174, 1362
BseMII	CTCAG	6 cut(s)	51, 270, 456, 504, 1476, 2070
BseNI	ACTGG	5 cut(s)	105, 427, 599, 752, 1761
BseRI	GAGGAG	4 cut(s)	223, 516, 530, 632
BseSI	GKGCMC	2 cut(s)	277, 1054
BseXI	GCAGC	3 cut(s)	758, 1263, 1967
BseYI	CCCAGC	1 cut(s)	159
BsgI	GTGCAG	2 cut(s)	642, 1058
BshFI	GGCC	8 cut(s)	275, 732, 838, 1090, 1176, 1662, 2033, 2132
BshNI	GGYRCC	4 cut(s)	651, 862, 1102, 1933
BsiHKAI	GWGCWC	1 cut(s)	2164
BsiHKCI	CYCGRG	2 cut(s)	1937, 2205
BslFI	GGGAC	2 cut(s)	5, 1367
BslI	CCNNNNNNNGG	5 cut(s)	28, 758, 872, 1097, 1329
BsmAI	GTCTC	4 cut(s)	307, 681, 1196, 2112
BsmFI	GGGAC	2 cut(s)	5, 1367
BsnI	GGCC	8 cut(s)	275, 732, 838, 1090, 1176, 1662, 2033, 2132
BsoBI	CYCGRG	2 cut(s)	1937, 2205
Bsp119I	TTCGAA	2 cut(s)	239, 267
Bsp120I	GGGCCC	1 cut(s)	273
Bsp1286I	GDGCHC	4 cut(s)	277, 1054, 1860, 2164
Bsp143I	GATC	6 cut(s)	8, 761, 875, 1302, 1633, 1837
Bsp1720I	GCTNAGC	1 cut(s)	2079
Bsp19I	CCATGG	1 cut(s)	1205
BspACI	CCGC	5 cut(s)	854, 1154, 1664, 2190, 2279
BspANI	GGCC	8 cut(s)	275, 732, 838, 1090, 1176, 1662, 2033, 2132
BspCNI	CTCAG	6 cut(s)	52, 269, 455, 505, 1477, 2071
BspPI	GGATC	5 cut(s)	16, 769, 883, 1310, 1628
BspT104I	TTCGAA	2 cut(s)	239, 267
BspT107I	GGYRCC	4 cut(s)	651, 862, 1102, 1933
BsrDI	GCAATG	3 cut(s)	74, 174, 1362
BsrI	ACTGG	5 cut(s)	105, 427, 599, 752, 1761
BssECI	CCNNGG	4 cut(s)	1171, 1205, 1790, 1806
BssMI	GATC	6 cut(s)	8, 761, 875, 1302, 1633, 1837
BssNI	GRCGYC	1 cut(s)	863
BssT1I	CCWWGG	1 cut(s)	1205
Bst2UI	CCWGG	4 cut(s)	1173, 1791, 1808, 1982
Bst4CI	ACNGT	8 cut(s)	146, 324, 485, 683, 827, 914, 1184, 1672
Bst6I	CTCTTC	1 cut(s)	1791
BstACI	GRCGYC	1 cut(s)	863
BstAPI	GCANNNNNTGC	1 cut(s)	1058
BstBI	TTCGAA	2 cut(s)	239, 267
BstC8I	GCNNGC	3 cut(s)	165, 1664, 1860
BstDEI	CTNAG	8 cut(s)	60, 256, 442, 513, 1196, 1485, 1699, 2079
BstDSI	CCRYGG	1 cut(s)	1205
BstH2I	RGCGCY	1 cut(s)	866
BstHHI	GCGC	1 cut(s)	865
BstKTI	GATC	6 cut(s)	11, 764, 878, 1305, 1636, 1840
BstMAI	GTCTC	4 cut(s)	307, 681, 1196, 2112
BstMBI	GATC	6 cut(s)	8, 761, 875, 1302, 1633, 1837
BstMWI	GCNNNNNNNGC	6 cut(s)	509, 851, 860, 1058, 1173, 2075
BstNI	CCWGG	4 cut(s)	1173, 1791, 1808, 1982
BstNSI	RCATGY	2 cut(s)	549, 1977
BstPAI	GACNNNNGTC	1 cut(s)	299
BstSCI	CCNGG	4 cut(s)	1171, 1789, 1806, 1980
BstSLI	GKGCMC	2 cut(s)	277, 1054
BstV1I	GCAGC	3 cut(s)	758, 1263, 1967
BstV2I	GAAGAC	2 cut(s)	165, 1596
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	8 cut(s)	275, 732, 838, 1090, 1176, 1662, 2033, 2132
BtgI	CCRYGG	1 cut(s)	1205
BtgZI	GCGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	1437
BtsIMutI	CAGTG	4 cut(s)	112, 688, 1437, 1754
Cac8I	GCNNGC	3 cut(s)	165, 1664, 1860
CaiI	CAGNNNCTG	1 cut(s)	840
CfoI	GCGC	1 cut(s)	865
Cfr13I	GGNCC	5 cut(s)	273, 274, 392, 837, 1661
Csp6I	GTAC	7 cut(s)	570, 823, 1265, 1295, 1460, 1823, 1998
CspCI	CAANNNNNGTGG	2 cut(s)	722, 757
CviQI	GTAC	7 cut(s)	570, 823, 1265, 1295, 1460, 1823, 1998
DdeI	CTNAG	8 cut(s)	60, 256, 442, 513, 1196, 1485, 1699, 2079
DinI	GGCGCC	1 cut(s)	864
DpnI	GATC	6 cut(s)	10, 763, 877, 1304, 1635, 1839
DpnII	GATC	6 cut(s)	8, 761, 875, 1302, 1633, 1837
EaeI	YGGCCR	2 cut(s)	730, 1088
Eam1104I	CTCTTC	1 cut(s)	1791
EarI	CTCTTC	1 cut(s)	1791
Eco130I	CCWWGG	1 cut(s)	1205
Eco147I	AGGCCT	1 cut(s)	2033
Eco24I	GRGCYC	2 cut(s)	277, 1860
Eco47I	GGWCC	1 cut(s)	392
Eco57I	CTGAAG	2 cut(s)	378, 2058
Eco88I	CYCGRG	2 cut(s)	1937, 2205
EcoO109I	RGGNCCY	2 cut(s)	274, 837
EcoRI	GAATTC	2 cut(s)	413, 902
EcoRII	CCWGG	4 cut(s)	1171, 1789, 1806, 1980
EcoT14I	CCWWGG	1 cut(s)	1205
EcoT22I	ATGCAT	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	277, 1860
EgeI	GGCGCC	1 cut(s)	864
EheI	GGCGCC	1 cut(s)	864
ErhI	CCWWGG	1 cut(s)	1205
FalI	AAGNNNNNCTT	2 cut(s)	1251, 1283
FaqI	GGGAC	2 cut(s)	5, 1367
FauI	CCCGC	1 cut(s)	1671
FauNDI	CATATG	1 cut(s)	886
FbaI	TGATCA	1 cut(s)	1837
Fnu4HI	GCNGC	4 cut(s)	747, 1252, 1956, 2279
FriOI	GRGCYC	2 cut(s)	277, 1860
Fsp4HI	GCNGC	4 cut(s)	747, 1252, 1956, 2279
FspBI	CTAG	4 cut(s)	84, 1374, 1382, 1863
GlaI	GCGC	1 cut(s)	864
GluI	GCNGC	4 cut(s)	747, 1252, 1956, 2279
GsaI	CCCAGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	866
HaeIII	GGCC	8 cut(s)	275, 732, 838, 1090, 1176, 1662, 2033, 2132
HhaI	GCGC	1 cut(s)	865
Hin1I	GRCGYC	1 cut(s)	863
Hin6I	GCGC	1 cut(s)	863
HinP1I	GCGC	1 cut(s)	863
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HindIII	AAGCTT	2 cut(s)	335, 1684
HphI	GGTGA	4 cut(s)	94, 312, 911, 1778
Hpy166II	GTNNAC	3 cut(s)	102, 185, 1754
Hpy188I	TCNGA	8 cut(s)	142, 351, 815, 880, 1216, 1486, 1555, 2287
Hpy188III	TCNNGA	7 cut(s)	84, 356, 918, 998, 1029, 2165, 2323
Hpy8I	GTNNAC	3 cut(s)	102, 185, 1754
HpyAV	CCTTC	6 cut(s)	22, 1252, 1483, 1661, 2082, 2186
HpyCH4III	ACNGT	8 cut(s)	146, 324, 485, 683, 827, 914, 1184, 1672
HpyCH4IV	ACGT	1 cut(s)	988
HpyF10VI	GCNNNNNNNGC	6 cut(s)	509, 851, 860, 1058, 1173, 2075
HpyF3I	CTNAG	8 cut(s)	60, 256, 442, 513, 1196, 1485, 1699, 2079
HpySE526I	ACGT	1 cut(s)	988
Hsp92I	GRCGYC	1 cut(s)	863
HspAI	GCGC	1 cut(s)	863
KasI	GGCGCC	1 cut(s)	862
Ksp22I	TGATCA	1 cut(s)	1837
Kzo9I	GATC	6 cut(s)	8, 761, 875, 1302, 1633, 1837
LmnI	GCTCC	4 cut(s)	161, 373, 517, 1808
Lsp1109I	GCAGC	3 cut(s)	758, 1263, 1967
LweI	GCATC	5 cut(s)	24, 40, 1211, 1407, 2092
MaeI	CTAG	4 cut(s)	84, 1374, 1382, 1863
MaeII	ACGT	1 cut(s)	988
MaeIII	GTNAC	2 cut(s)	1731, 1976
MalI	GATC	6 cut(s)	10, 763, 877, 1304, 1635, 1839
MboI	GATC	6 cut(s)	8, 761, 875, 1302, 1633, 1837
MboII	GAAGA	5 cut(s)	165, 1017, 1230, 1596, 1778
MfeI	CAATTG	2 cut(s)	1716, 2268
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	4 cut(s)	277, 1054, 1860, 2164
MlsI	TGGCCA	2 cut(s)	732, 1090
MluNI	TGGCCA	2 cut(s)	732, 1090
Mly113I	GGCGCC	1 cut(s)	863
MlyI	GAGTC	3 cut(s)	309, 578, 733
MmeI	TCCRAC	3 cut(s)	138, 622, 2310
Mox20I	TGGCCA	2 cut(s)	732, 1090
Mph1103I	ATGCAT	1 cut(s)	76
MroXI	GAANNNNTTC	3 cut(s)	462, 1624, 1776
MscI	TGGCCA	2 cut(s)	732, 1090
MslI	CAYNNNNRTG	3 cut(s)	544, 1367, 1850
Msp20I	TGGCCA	2 cut(s)	732, 1090
MspA1I	CMGCKG	2 cut(s)	1254, 2078
MspR9I	CCNGG	4 cut(s)	1173, 1791, 1808, 1982
MunI	CAATTG	2 cut(s)	1716, 2268
MvaI	CCWGG	4 cut(s)	1173, 1791, 1808, 1982
MwoI	GCNNNNNNNGC	6 cut(s)	509, 851, 860, 1058, 1173, 2075
NarI	GGCGCC	1 cut(s)	863
NcoI	CCATGG	1 cut(s)	1205
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	6 cut(s)	8, 761, 875, 1302, 1633, 1837
NsiI	ATGCAT	1 cut(s)	76
NspI	RCATGY	2 cut(s)	549, 1977
NspV	TTCGAA	2 cut(s)	239, 267
PceI	AGGCCT	1 cut(s)	2033
PciI	ACATGT	1 cut(s)	545
PdmI	GAANNNNTTC	3 cut(s)	462, 1624, 1776
PfeI	GAWTC	8 cut(s)	352, 938, 1043, 1067, 1135, 1496, 1625, 1966
PflMI	CCANNNNNTGG	2 cut(s)	872, 1097
PkrI	GCNGC	4 cut(s)	748, 1253, 1957, 2280
PleI	GAGTC	3 cut(s)	308, 578, 732
PluTI	GGCGCC	1 cut(s)	866
PpsI	GAGTC	3 cut(s)	308, 578, 732
PscI	ACATGT	1 cut(s)	545
PshAI	GACNNNNGTC	1 cut(s)	299
PshBI	ATTAAT	1 cut(s)	1640
PsiI	TTATAA	1 cut(s)	1121
Psp6I	CCWGG	4 cut(s)	1171, 1789, 1806, 1980
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	4 cut(s)	1171, 1789, 1806, 1980
PspOMI	GGGCCC	1 cut(s)	273
PspPI	GGNCC	5 cut(s)	273, 274, 392, 837, 1661
PstNI	CAGNNNCTG	1 cut(s)	840
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	2 cut(s)	1254, 2078
RsaI	GTAC	7 cut(s)	571, 824, 1266, 1296, 1461, 1824, 1999
RsaNI	GTAC	7 cut(s)	570, 823, 1265, 1295, 1460, 1823, 1998
RseI	CAYNNNNRTG	3 cut(s)	544, 1367, 1850
SatI	GCNGC	4 cut(s)	747, 1252, 1956, 2279
Sau3AI	GATC	6 cut(s)	8, 761, 875, 1302, 1633, 1837
Sau96I	GGNCC	5 cut(s)	273, 274, 392, 837, 1661
ScaI	AGTACT	2 cut(s)	824, 1266
SchI	GAGTC	3 cut(s)	309, 578, 733
ScrFI	CCNGG	4 cut(s)	1173, 1791, 1808, 1982
SduI	GDGCHC	4 cut(s)	277, 1054, 1860, 2164
SfaNI	GCATC	5 cut(s)	24, 40, 1211, 1407, 2092
SfoI	GGCGCC	1 cut(s)	864
SfuI	TTCGAA	2 cut(s)	239, 267
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	3 cut(s)	544, 1367, 1850
SmlI	CTYRAG	2 cut(s)	399, 2163
SmoI	CTYRAG	2 cut(s)	399, 2163
SseBI	AGGCCT	1 cut(s)	2033
SsiI	CCGC	5 cut(s)	854, 1154, 1664, 2190, 2279
SspDI	GGCGCC	1 cut(s)	862
SspI	AATATT	1 cut(s)	1798
SspMI	CTAG	4 cut(s)	84, 1374, 1382, 1863
StuI	AGGCCT	1 cut(s)	2033
StyD4I	CCNGG	4 cut(s)	1171, 1789, 1806, 1980
StyI	CCWWGG	1 cut(s)	1205
TaaI	ACNGT	8 cut(s)	146, 324, 485, 683, 827, 914, 1184, 1672
TaiI	ACGT	1 cut(s)	991
TaqI	TCGA	2 cut(s)	239, 267
TatI	WGTACW	3 cut(s)	822, 1264, 1822
TauI	GCSGC	1 cut(s)	2281
TfiI	GAWTC	8 cut(s)	352, 938, 1043, 1067, 1135, 1496, 1625, 1966
TscAI	CASTG	4 cut(s)	112, 688, 1444, 1761
TseI	GCWGC	3 cut(s)	746, 1251, 1955
TspDTI	ATGAA	9 cut(s)	81, 425, 471, 504, 1317, 1332, 1544, 1617, 1643
TspGWI	ACGGA	1 cut(s)	1315
TspRI	CASTG	4 cut(s)	112, 688, 1444, 1761
Van91I	CCANNNNNTGG	2 cut(s)	872, 1097
VpaK11BI	GGWCC	1 cut(s)	392
VspI	ATTAAT	1 cut(s)	1640
XapI	RAATTY	6 cut(s)	215, 384, 413, 471, 902, 2121
XbaI	TCTAGA	1 cut(s)	83
XceI	RCATGY	2 cut(s)	549, 1977
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmnI	GAANNNNTTC	3 cut(s)	462, 1624, 1776
XspI	CTAG	4 cut(s)	84, 1374, 1382, 1863
ZrmI	AGTACT	2 cut(s)	824, 1266
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.