FvH4_4g02810

Hydrolase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
2520288 .. 2525969
5682 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02810.t1

Sequence Viewer

Length: 1410 bp
ATGCCTCCTGGATTCTCTCTCTCAGCACTCATCGTGCTCTTCTTCTTTCTCTGTTCCTTCACTTCAATCTTAGCTCACACCAATGAAGACCCAACAATCAAAACAATGGAGGACTTCTCAGGCTACCCAATTCACGAGTCACACTCTCACCTCTCTTCACTTTCAGTTGACGCTCAAGGTTTAGAAAAACAGATTGATGAACTTTCGAGCTTTTCGGATACATCTTCCCCATCAGTGACCAGGGTCTTGTATACTGAGAAAGATGTATTGGCACGTAGATTCATCAAAAACTTGATGGGACTCTCTGGTTTGTCTGTTAGGGAGGATGCTGTTGGTAACATATTTGGTCGATGGGAAGGCTCCAATCCAGAGCTTTCTGCTGTTGCAACAGGTTCTCACATTGATGCTATTCCATACTCTGGAAAGTACGACGGAGTTGTGGGTGTTTTGGGTGCTATAGAAGCGATCAATGTACTAATAAGGTCCGGGTTCAAACCTAAACGATCAGTAGAAGTTATCATGTTCACTTCAGAAGAGCCAACACGCTTTGGAATTAGCTGTCTAGGAAGCCGCTTAATGGCAGGGAGTCAGACACTTGTTGAAGCTCTCAAGACCACAGTTGATGGTCAAAATATATCCTTTGTAGATGCATCACAATCTGCTGGCTACACGAAAGATCATAATGATATCTCTAGTGTGTTTTTGGAAAAAGGAAGCTACTCTGCTTTTGTGGAATTGCATATCGAGCAGGGCCCTATTTTAGAGGAGGAAGGAATACCAATTGGCATAGTAACTGCCATTGCAGCCCCGGCAAGCATAAAAGTGGAGTTCCAGGGAAATGGAGGCCATGCTGGTGCTGTCCTAATGCCAAATAGAAATGATGCTGGACTAGCAGCTGCAGAATTAGCGCTAGCTGTTGAGAGACATGTATTAGAATCTGGATCTGTTGATACTGTTGGTACAGTTGGTATTCTGGAGCTACACCCTGGAGCCATCAACAGCATCCCAAGCAAATCACATTTGGAAATCGACACAAGAGACATTAATGAAGAGCGAAGAAACATCGTAATTGAGAAAATCCATCAATCCGCAATTTCTATAGCCAAAAAGCGGGGGGTCAGTCTATCCGAATTCAAGATTGTAAATCAAGATCCACCAGCACTTTCTGATAAGTCAATAATTCACGCGATGGAAGCTTCATCAAAAGAGCTGAACTTAGCCCACAAGTTGATGATTAGCCGAGCTTACCATGATTCATTGTTCATGGCCAGAATATCCCCTATGGGCATGATATTCATTCCATGTTACAAAGGTTACAGCCATAAACCGGAAGAGTACTCCTCGACTCAGGATATATCGAATGGGGTCAAAGTATTAGCGTTGACCCTTGTTAAGTTGTCATTGCAGTGA

Protein Analysis

470

Amino Acids

50.61

Weight (kDa)

5.53

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M28 PF04389 113 - 199 7.1e-09 Peptidase family M28
Peptidase_M20 PF01546 130 - 463 1.6e-25 Peptidase family M20/M25/M40
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 419
AccI GTMKAC 1 cut(s) 251
AccII CGCG 1 cut(s) 1187
AciI CCGC 3 cut(s) 571, 1089, 1111
AclWI GGATC 2 cut(s) 949, 1145
AcoI YGGCCR 1 cut(s) 1266
AcsI RAATTY 1 cut(s) 1130
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 4 cut(s) 428, 474, 961, 1337
AfeI AGCGCT 1 cut(s) 909
AfiI CCNNNNNNNGG 4 cut(s) 419, 577, 1110, 1327
AflIII ACRYGT 1 cut(s) 925
AgsI TTSAA 4 cut(s) 66, 493, 602, 1135
AjnI CCWGG 4 cut(s) 7, 239, 831, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 916, 1032
AlwI GGATC 2 cut(s) 949, 1145
Aor51HI AGCGCT 1 cut(s) 909
AoxI GGCC 3 cut(s) 751, 844, 1266
ApaI GGGCCC 1 cut(s) 755
ApeKI GCWGC 3 cut(s) 803, 893, 896
ApoI RAATTY 1 cut(s) 1130
AseI ATTAAT 1 cut(s) 1044
AspLEI GCGC 1 cut(s) 910
AspS9I GGNCC 3 cut(s) 483, 751, 752
AsuC2I CCSGG 2 cut(s) 487, 809
AsuHPI GGTGA 1 cut(s) 140
AsuNHI GCTAGC 1 cut(s) 910
AvaII GGWCC 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 755
BalI TGGCCA 1 cut(s) 1268
BanII GRGCYC 1 cut(s) 755
BauI CACGAG 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 815, 883, 905
BccI CCATC 7 cut(s) 238, 289, 345, 617, 1001, 1089, 1183
BciT130I CCWGG 4 cut(s) 9, 241, 833, 987
BciVI GTATCC 1 cut(s) 211
BcnI CCSGG 2 cut(s) 487, 809
BcoDI GTCTC 2 cut(s) 916, 1032
BfaI CTAG 4 cut(s) 563, 693, 890, 911
BfmI CTRYAG 3 cut(s) 456, 897, 1098
BfoI RGCGCY 1 cut(s) 911
BfuI GTATCC 1 cut(s) 211
BisI GCNGC 4 cut(s) 571, 804, 894, 897
BlsI GCNGC 4 cut(s) 572, 805, 895, 898
BmcAI AGTACT 1 cut(s) 1337
Bme1390I CCNGG 6 cut(s) 9, 241, 487, 809, 833, 987
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 3 cut(s) 483, 751, 752
BmiI GGNNCC 3 cut(s) 361, 753, 991
BmrFI CCNGG 6 cut(s) 9, 241, 487, 809, 833, 987
BmsI GCATC 6 cut(s) 316, 394, 637, 659, 871, 1011
BmtI GCTAGC 1 cut(s) 914
BoxI GACNNNNGTC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 93
BplI GAGNNNNNCTC 6 cut(s) 101, 133, 128, 160, 1325, 1357
BpmI CTGGAG 2 cut(s) 995, 1008
BpuEI CTTGAG 2 cut(s) 159, 593
BpuMI CCSGG 2 cut(s) 487, 809
BsaAI YACGTR 1 cut(s) 275
BsaJI CCNNGG 4 cut(s) 240, 807, 832, 985
BsaWI WCCGGW 1 cut(s) 1327
Bsc4I CCNNNNNNNGG 4 cut(s) 419, 577, 1110, 1327
Bse3DI GCAATG 2 cut(s) 798, 1400
BseBI CCWGG 4 cut(s) 9, 241, 833, 987
BseDI CCNNGG 4 cut(s) 240, 807, 832, 985
BseGI GGATG 2 cut(s) 331, 1002
BseLI CCNNNNNNNGG 4 cut(s) 419, 577, 1110, 1327
BseMI GCAATG 2 cut(s) 798, 1400
BseMII CTCAG 4 cut(s) 36, 132, 246, 1361
BseRI GAGGAG 2 cut(s) 779, 1330
BseSI GKGCMC 1 cut(s) 755
BseXI GCAGC 3 cut(s) 815, 883, 905
Bsh1236I CGCG 1 cut(s) 1187
BshFI GGCC 3 cut(s) 753, 846, 1268
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 3 cut(s) 486, 809, 1328
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 4 cut(s) 419, 577, 1110, 1327
BsmAI GTCTC 2 cut(s) 916, 1032
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 3 cut(s) 753, 846, 1268
Bsp120I GGGCCC 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 39, 755
Bsp143I GATC 5 cut(s) 465, 503, 676, 941, 1150
BspACI CCGC 3 cut(s) 571, 1089, 1111
BspANI GGCC 3 cut(s) 753, 846, 1268
BspCNI CTCAG 4 cut(s) 35, 131, 247, 1360
BspFNI CGCG 1 cut(s) 1187
BspLI GGNNCC 3 cut(s) 361, 753, 991
BspMAI CTGCAG 1 cut(s) 901
BspOI GCTAGC 1 cut(s) 914
BspPI GGATC 2 cut(s) 949, 1145
BspQI GCTCTTC 3 cut(s) 44, 528, 1044
BsrDI GCAATG 2 cut(s) 798, 1400
BssECI CCNNGG 4 cut(s) 240, 807, 832, 985
BssMI GATC 5 cut(s) 465, 503, 676, 941, 1150
BssNAI GTATAC 1 cut(s) 252
BssSI CACGAG 1 cut(s) 134
Bst1107I GTATAC 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 4 cut(s) 9, 241, 833, 987
Bst4CI ACNGT 3 cut(s) 619, 955, 964
Bst6I CTCTTC 5 cut(s) 44, 160, 528, 1044, 1326
BstBAI YACGTR 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 664, 814, 912
BstDEI CTNAG 6 cut(s) 22, 70, 118, 255, 1216, 1347
BstF5I GGATG 2 cut(s) 331, 1002
BstFNI CGCG 1 cut(s) 1187
BstH2I RGCGCY 1 cut(s) 911
BstHHI GCGC 1 cut(s) 910
BstKTI GATC 5 cut(s) 468, 506, 679, 944, 1153
BstMAI GTCTC 2 cut(s) 916, 1032
BstMBI GATC 5 cut(s) 465, 503, 676, 941, 1150
BstMWI GCNNNNNNNGC 8 cut(s) 461, 745, 803, 809, 890, 905, 1008, 1193
BstNI CCWGG 4 cut(s) 9, 241, 833, 987
BstNSI RCATGY 1 cut(s) 929
BstPAI GACNNNNGTC 1 cut(s) 242
BstSCI CCNGG 6 cut(s) 7, 239, 485, 807, 831, 985
BstSFI CTRYAG 3 cut(s) 456, 897, 1098
BstSLI GKGCMC 1 cut(s) 755
BstUI CGCG 1 cut(s) 1187
BstV1I GCAGC 3 cut(s) 815, 883, 905
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 2 cut(s) 941, 1150
BstXI CCANNNNNNTGG 1 cut(s) 839
BstYI RGATCY 2 cut(s) 941, 1150
BstZ17I GTATAC 1 cut(s) 252
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 3 cut(s) 753, 846, 1268
BtgZI GCGATG 1 cut(s) 1202
BtsCI GGATG 2 cut(s) 331, 1002
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 664, 814, 912
CfoI GCGC 1 cut(s) 910
Cfr13I GGNCC 3 cut(s) 483, 751, 752
CseI GACGC 1 cut(s) 179
Csp6I GTAC 4 cut(s) 427, 473, 960, 1336
CviAII CATG 7 cut(s) 520, 848, 926, 1250, 1264, 1288, 1302
CviQI GTAC 4 cut(s) 427, 473, 960, 1336
DdeI CTNAG 6 cut(s) 22, 70, 118, 255, 1216, 1347
DpnI GATC 5 cut(s) 467, 505, 678, 943, 1152
DpnII GATC 5 cut(s) 465, 503, 676, 941, 1150
EaeI YGGCCR 1 cut(s) 1266
Eam1104I CTCTTC 5 cut(s) 44, 160, 528, 1044, 1326
EarI CTCTTC 5 cut(s) 44, 160, 528, 1044, 1326
Eco24I GRGCYC 1 cut(s) 755
Eco32I GATATC 1 cut(s) 688
Eco47I GGWCC 1 cut(s) 483
Eco47III AGCGCT 1 cut(s) 909
Eco57I CTGAAG 1 cut(s) 513
EcoO109I RGGNCCY 2 cut(s) 751, 752
EcoRI GAATTC 1 cut(s) 1130
EcoRII CCWGG 4 cut(s) 7, 239, 831, 985
EcoRV GATATC 1 cut(s) 688
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 755
FaeI CATG 7 cut(s) 523, 851, 929, 1253, 1267, 1291, 1305
FaqI GGGAC 1 cut(s) 312
FatI CATG 7 cut(s) 519, 847, 925, 1249, 1263, 1287, 1301
FauI CCCGC 1 cut(s) 1104
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 4 cut(s) 571, 804, 894, 897
FokI GGATG 2 cut(s) 338, 989
FriOI GRGCYC 1 cut(s) 755
Fsp4HI GCNGC 4 cut(s) 571, 804, 894, 897
FspBI CTAG 4 cut(s) 563, 693, 890, 911
GlaI GCGC 1 cut(s) 909
GluI GCNGC 4 cut(s) 571, 804, 894, 897
GsuI CTGGAG 2 cut(s) 995, 1008
HaeII RGCGCY 1 cut(s) 911
HaeIII GGCC 3 cut(s) 753, 846, 1268
HapII CCGG 3 cut(s) 486, 809, 1328
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 910
Hin1II CATG 7 cut(s) 523, 851, 929, 1253, 1267, 1291, 1305
Hin6I GCGC 1 cut(s) 908
HinP1I GCGC 1 cut(s) 908
HincII GTYRAC 2 cut(s) 169, 1383
HindII GTYRAC 2 cut(s) 169, 1383
HindIII AAGCTT 1 cut(s) 1194
HinfI GANTC 8 cut(s) 12, 137, 279, 300, 586, 935, 1253, 1345
HpaII CCGG 3 cut(s) 486, 809, 1328
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 4 cut(s) 169, 252, 525, 1383
Hpy188I TCNGA 5 cut(s) 217, 532, 591, 1129, 1168
Hpy188III TCNNGA 9 cut(s) 134, 368, 420, 610, 939, 974, 1135, 1148, 1349
Hpy8I GTNNAC 4 cut(s) 169, 252, 525, 1383
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 3 cut(s) 67, 350, 764
HpyCH4III ACNGT 3 cut(s) 619, 955, 964
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 6 cut(s) 386, 650, 739, 803, 899, 1405
HpyF10VI GCNNNNNNNGC 8 cut(s) 461, 745, 803, 809, 890, 905, 1008, 1193
HpyF3I CTNAG 6 cut(s) 22, 70, 118, 255, 1216, 1347
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 7 cut(s) 523, 851, 929, 1253, 1267, 1291, 1305
HspAI GCGC 1 cut(s) 908
Kzo9I GATC 5 cut(s) 465, 503, 676, 941, 1150
LguI GCTCTTC 3 cut(s) 44, 528, 1044
LmnI GCTCC 3 cut(s) 365, 976, 989
Lsp1109I GCAGC 3 cut(s) 815, 883, 905
LweI GCATC 6 cut(s) 316, 394, 637, 659, 871, 1011
MaeI CTAG 4 cut(s) 563, 693, 890, 911
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 6 cut(s) 138, 235, 335, 790, 1304, 1313
MalI GATC 5 cut(s) 467, 505, 678, 943, 1152
MboI GATC 5 cut(s) 465, 503, 676, 941, 1150
MboII GAAGA 9 cut(s) 31, 34, 98, 147, 216, 545, 1061, 1068, 1343
MfeI CAATTG 1 cut(s) 780
MflI RGATCY 2 cut(s) 941, 1150
MhlI GDGCHC 2 cut(s) 39, 755
MlsI TGGCCA 1 cut(s) 1268
MluCI AATT 9 cut(s) 129, 552, 734, 780, 902, 1068, 1092, 1130, 1179
MluNI TGGCCA 1 cut(s) 1268
MlyI GAGTC 4 cut(s) 146, 294, 595, 1339
MnlI CCTC 8 cut(s) 15, 103, 161, 316, 757, 760, 836, 1351
Mox20I TGGCCA 1 cut(s) 1268
Mph1103I ATGCAT 1 cut(s) 652
MscI TGGCCA 1 cut(s) 1268
MseI TTAA 3 cut(s) 575, 1044, 1392
MslI CAYNNNNRTG 5 cut(s) 81, 402, 821, 852, 1405
Msp20I TGGCCA 1 cut(s) 1268
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 3 cut(s) 486, 809, 1328
MspR9I CCNGG 6 cut(s) 9, 241, 487, 809, 833, 987
MunI CAATTG 1 cut(s) 780
MvaI CCWGG 4 cut(s) 9, 241, 833, 987
MvnI CGCG 1 cut(s) 1187
MwoI GCNNNNNNNGC 8 cut(s) 461, 745, 803, 809, 890, 905, 1008, 1193
NciI CCSGG 2 cut(s) 487, 809
NdeII GATC 5 cut(s) 465, 503, 676, 941, 1150
NheI GCTAGC 1 cut(s) 910
NlaIII CATG 7 cut(s) 523, 851, 929, 1253, 1267, 1291, 1305
NlaIV GGNNCC 3 cut(s) 361, 753, 991
NmeAIII GCCGAG 1 cut(s) 1265
NmuCI GTSAC 2 cut(s) 138, 235
NsiI ATGCAT 1 cut(s) 652
NspI RCATGY 1 cut(s) 929
PciI ACATGT 1 cut(s) 925
PciSI GCTCTTC 3 cut(s) 44, 528, 1044
PfeI GAWTC 4 cut(s) 12, 279, 935, 1253
PflMI CCANNNNNTGG 1 cut(s) 419
PfoI TCCNGGA 1 cut(s) 7
PkrI GCNGC 4 cut(s) 572, 805, 895, 898
PleI GAGTC 4 cut(s) 145, 294, 594, 1339
PpsI GAGTC 4 cut(s) 145, 294, 594, 1339
Ppu21I YACGTR 1 cut(s) 275
PscI ACATGT 1 cut(s) 925
PshAI GACNNNNGTC 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 1044
Psp6I CCWGG 4 cut(s) 7, 239, 831, 985
PspGI CCWGG 4 cut(s) 7, 239, 831, 985
PspN4I GGNNCC 3 cut(s) 361, 753, 991
PspOMI GGGCCC 1 cut(s) 751
PspPI GGNCC 3 cut(s) 483, 751, 752
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 2 cut(s) 941, 1150
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 4 cut(s) 428, 474, 961, 1337
RsaNI GTAC 4 cut(s) 427, 473, 960, 1336
RseI CAYNNNNRTG 5 cut(s) 81, 402, 821, 852, 1405
SapI GCTCTTC 3 cut(s) 44, 528, 1044
SaqAI TTAA 3 cut(s) 575, 1044, 1392
SatI GCNGC 4 cut(s) 571, 804, 894, 897
Sau3AI GATC 5 cut(s) 465, 503, 676, 941, 1150
Sau96I GGNCC 3 cut(s) 483, 751, 752
ScaI AGTACT 1 cut(s) 1337
SchI GAGTC 4 cut(s) 146, 294, 595, 1339
ScrFI CCNGG 6 cut(s) 9, 241, 487, 809, 833, 987
SduI GDGCHC 2 cut(s) 39, 755
SfaNI GCATC 6 cut(s) 316, 394, 637, 659, 871, 1011
SfcI CTRYAG 3 cut(s) 456, 897, 1098
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 5 cut(s) 81, 402, 821, 852, 1405
SmlI CTYRAG 2 cut(s) 174, 608
SmoI CTYRAG 2 cut(s) 174, 608
Sse9I AATT 9 cut(s) 129, 552, 734, 780, 902, 1068, 1092, 1130, 1179
SsiI CCGC 3 cut(s) 571, 1089, 1111
SspMI CTAG 4 cut(s) 563, 693, 890, 911
StyD4I CCNGG 6 cut(s) 7, 239, 485, 807, 831, 985
TaaI ACNGT 3 cut(s) 619, 955, 964
TaiI ACGT 1 cut(s) 277
TaqI TCGA 6 cut(s) 206, 349, 744, 1029, 1343, 1358
TasI AATT 9 cut(s) 129, 552, 734, 780, 902, 1068, 1092, 1130, 1179
TatI WGTACW 2 cut(s) 472, 1335
TauI GCSGC 1 cut(s) 573
TfiI GAWTC 4 cut(s) 12, 279, 935, 1253
Tru1I TTAA 3 cut(s) 575, 1044, 1392
Tru9I TTAA 3 cut(s) 575, 1044, 1392
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 2 cut(s) 138, 235
TseI GCWGC 3 cut(s) 803, 893, 896
Tsp45I GTSAC 2 cut(s) 138, 235
TspDTI ATGAA 8 cut(s) 99, 213, 271, 1062, 1188, 1245, 1252, 1285
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 1 cut(s) 240
Van91I CCANNNNNTGG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 483
VspI ATTAAT 1 cut(s) 1044
XapI RAATTY 1 cut(s) 1130
XceI RCATGY 1 cut(s) 929
XmiI GTMKAC 1 cut(s) 251
XspI CTAG 4 cut(s) 563, 693, 890, 911
ZrmI AGTACT 1 cut(s) 1337
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.