Rroxscaffold_1G00049440

Hydrolase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
69617390 .. 69617948
559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049440.1

Sequence Viewer

Length: 501 bp
ATGGAGGACTTCTCAGGCTGCCCAATTCACAAGTCACACTCTCACCTTTCGTCACTATCCGTTGACGCTCAAAGTTTAAAGAAACAGATTGATGAACCTTCAAGTTTTTCTGATGCACCTGCCCTCGCCCCTGCCCAGTCAATGACTAGGGTTTTGTATACTGAGAAAAATGTGTTGGTACATAGATTCATCCAAAACTTGGTGGGACTCTCTAGTTTGTCTGTTGAAGAGGATGTTGTCGGTAACGTATTTGGTCTATGGGAAGGCTCTAATCCAGAGCTTTCGGCCATTGTGACAGGTTCTTGCATTGATGCCATCCCATACTATGGTATCTTACAGAAGCACGAGCACTCTATGTCTGCAATAGGAAGTGCATTGGTCCTAGTTGTGAAACTTGAAGGCTATGAAGCAGAAGTTGCAGACGTGATGATTAAAGGAAAGAGAGTGGAATGGTTTCAGCTGAAGAATTATGGGCACATTTCCCTTGTCTTACATGTTTAA

Protein Analysis

166

Amino Acids

18.16

Weight (kDa)

5.53

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
Acc36I ACCTGC 1 cut(s) 127
AccB7I CCANNNNNTGG 2 cut(s) 199, 326
AccI GTMKAC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 285
AcuI CTGAAG 1 cut(s) 482
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 199, 326
AflIII ACRYGT 1 cut(s) 493
AgsI TTSAA 3 cut(s) 102, 227, 398
AjiI CACGTC 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 2 cut(s) 280, 460
AluI AGCT 2 cut(s) 280, 460
Alw21I GWGCWC 1 cut(s) 351
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 18
ArsI GACNNNNNNTTYG 2 cut(s) 136, 168
Asp700I GAANNNNTTC 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 379
BaeGI GKGCMC 1 cut(s) 477
BaeI ACNNNNGTAYC 2 cut(s) 313, 346
BauI CACGAG 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 5
BccI CCATC 1 cut(s) 323
BfaI CTAG 3 cut(s) 147, 213, 383
BfuAI ACCTGC 1 cut(s) 127
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 379
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 379
BmrI ACTGGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 103, 301
BmuI ACTGGG 1 cut(s) 130
BplI GAGNNNNNCTC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 326
Bse1I ACTGG 1 cut(s) 136
BseGI GGATG 3 cut(s) 189, 238, 315
BseLI CCNNNNNNNGG 2 cut(s) 199, 326
BseMII CTCAG 2 cut(s) 27, 153
BseNI ACTGG 1 cut(s) 136
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 1 cut(s) 5
BshFI GGCC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 351
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 199, 326
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 351, 477
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 2 cut(s) 26, 154
BspMI ACCTGC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 136
BssNAI GTATAC 1 cut(s) 159
BssSI CACGAG 1 cut(s) 344
Bst1107I GTATAC 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 344
Bst6I CTCTTC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 416
BstDEI CTNAG 2 cut(s) 13, 162
BstF5I GGATG 3 cut(s) 189, 238, 315
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 497
BstSLI GKGCMC 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 5
BstZ17I GTATAC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 287
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 3 cut(s) 189, 238, 315
BveI ACCTGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 379
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 179
CviAII CATG 1 cut(s) 494
CviJI RGCY 6 cut(s) 18, 267, 280, 287, 402, 460
CviKI_1 RGCY 6 cut(s) 18, 267, 280, 287, 402, 460
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 2 cut(s) 13, 162
DraI TTTAAA 1 cut(s) 78
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 482
FaeI CATG 1 cut(s) 497
FaiI YATR 9 cut(s) 159, 183, 259, 322, 327, 356, 405, 471, 495
FaqI GGGAC 1 cut(s) 219
FatI CATG 1 cut(s) 493
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 3 cut(s) 176, 245, 302
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 3 cut(s) 147, 213, 383
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 287
HgaI GACGC 1 cut(s) 74
Hin1II CATG 1 cut(s) 497
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 2 cut(s) 186, 207
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 64, 159
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 2 cut(s) 64, 159
HpyAV CCTTC 3 cut(s) 108, 257, 392
HpyCH4IV ACGT 2 cut(s) 246, 423
HpyCH4V TGCA 5 cut(s) 116, 306, 362, 374, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 2 cut(s) 13, 162
HpySE526I ACGT 2 cut(s) 246, 423
Hsp92II CATG 1 cut(s) 497
LpnPI CCDG 5 cut(s) 132, 144, 149, 282, 288
Lsp1109I GCAGC 1 cut(s) 5
LweI GCATC 2 cut(s) 103, 301
MaeI CTAG 3 cut(s) 147, 213, 383
MaeII ACGT 2 cut(s) 246, 423
MaeIII GTNAC 4 cut(s) 33, 51, 242, 292
MboII GAAGA 2 cut(s) 239, 475
MhlI GDGCHC 2 cut(s) 351, 477
MluCI AATT 2 cut(s) 24, 466
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 2 cut(s) 134, 223
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 3 cut(s) 77, 432, 499
MspA1I CMGCKG 1 cut(s) 460
MwoI GCNNNNNNNGC 1 cut(s) 416
NlaIII CATG 1 cut(s) 497
NmuCI GTSAC 3 cut(s) 33, 51, 292
NspI RCATGY 1 cut(s) 497
PaqCI CACCTGC 1 cut(s) 127
PciI ACATGT 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 1 cut(s) 186
PflMI CCANNNNNTGG 2 cut(s) 199, 326
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PscI ACATGT 1 cut(s) 493
PspPI GGNCC 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SaqAI TTAA 3 cut(s) 77, 432, 499
SatI GCNGC 1 cut(s) 19
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 1 cut(s) 201
SduI GDGCHC 2 cut(s) 351, 477
SetI ASST 8 cut(s) 48, 100, 121, 249, 282, 301, 426, 462
SfaNI GCATC 2 cut(s) 103, 301
SinI GGWCC 1 cut(s) 379
Sse9I AATT 2 cut(s) 24, 466
SspMI CTAG 3 cut(s) 147, 213, 383
TaiI ACGT 2 cut(s) 249, 426
TasI AATT 2 cut(s) 24, 466
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 3 cut(s) 77, 432, 499
Tru9I TTAA 3 cut(s) 77, 432, 499
TseFI GTSAC 3 cut(s) 33, 51, 292
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 3 cut(s) 33, 51, 292
TspDTI ATGAA 3 cut(s) 108, 178, 420
TspGWI ACGGA 1 cut(s) 49
Van91I CCANNNNNTGG 2 cut(s) 199, 326
VpaK11BI GGWCC 1 cut(s) 379
XceI RCATGY 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 3 cut(s) 147, 213, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.