RchiOBHm_Chr4g0390621

Hydrolase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
5896406 .. 5901253
4848 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36361

Sequence Viewer

Length: 1281 bp
ATGCCTCTCAGATTATCTGTCTCAGCACTCACCGTGCTCTTCTTCTTCTTCTTCCTCTGTTCCTTCACTGCAATCTTAGCCCACAACAATGAAGACCCAACAATCAAAACAATGGAGGACTTCTCAGGCTACCCAATTCACGAGTCACACTCTCACCTTTCTTCACTATCAGTTGACGCTCAAAGTTTACAGAAACAGATTGATGAACTTTCGAGTTTTTCGGATACACCTGCCCCATCAGTGACCAGGGTCTTGTATACTGAGAAGGATGTCTTGGCGCGTAGATTCATTAAAAACTTGATGGGACTCTCTGGTTTGTCCGTTAGAGAGGATGCTGTTGGTAACATATTTGGTCGATGGGAAGGCTCTAATCCAGAGCTTTCTGCCGTTGCAACAGGTTCTCACATTGATGCCATTCCATACTCTGGAAAGTATGATGGAGTTGTGGGTGTTTTGGGTGCTATAGAAGCGATCAATGTACTAACAAGGTCCGGGTTCAAACCTAAACGATCACTAGAAGTTATCATGTTCACCTCAGAAGAGCCTACACGCTTTGGAATAAGCTGTCTGGGAAGGTTCGGATCCGCACCTGGTCACATTCCCTACCACCGGTTTTATTCTGGTAATTGCAGAGTTGTTCTTTGGTTCTTCTTTTGCAGTTTCAACATCTTTGAAATTTTCTTTACCCTCCCCCCTTCTCCTTTTATGCTCATTTTAAGCTGCTTCCAAGATTTTTCAACTGTCATAAATGATGCTGGACTAGCAGCTGCAGAATTAGCTCTAGCAGTTGAGAGACATGTATTAGAATCTGGATCTATTGATACTGTTGGTACAGTTGGTATTCTGGAGCTACACCCCGGAGCTATCAACAGCATCCCAAGCAAATCACATCTGGAAATCGACACAAGAGACATTGATGAAGAGCGAAGAAACACCGTAATTGAGAAAATCCATCAATCTGCAATTTCTATAGCCAGAAAGCGGCGAGTCACTCTATCCGAATTCAAAATCGTAAACCGGGATCCACCTGCACTTTCTGAGAAATCAATACTTGACGCAATGGTAGCTTCATCAAAAGAGCTCAACTTAACCCATAAATTGATGATTAGCCGAGCCTACCACGATTCATTGTTCATGGCCAGAATATCCCCAATGGGCATGATATTCATTCCATGTTACAAAGGTTACAGCCATAAACCTGAAGAGTATTCCTCTACTCAGGACATATCGAATGGGGTCAAGGTATTAGCCCTGACCCTTGCAAAATTGTCATTGCAGTGA

Protein Analysis

426

Amino Acids

47.17

Weight (kDa)

6.28

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M28 PF04389 115 - 182 6.3e-07 Peptidase family M28
Peptidase_M20 PF01546 132 - 421 2.9e-17 Peptidase family M20/M25/M40
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 238, 1036
Acc36I ACCTGC 2 cut(s) 238, 1036
AccB7I CCANNNNNTGG 1 cut(s) 425
AccI GTMKAC 1 cut(s) 257
AccII CGCG 1 cut(s) 280
AciI CCGC 2 cut(s) 585, 982
AclWI GGATC 5 cut(s) 576, 589, 820, 1016, 1029
AcoI YGGCCR 1 cut(s) 1137
AcsI RAATTY 2 cut(s) 675, 1001
AcuI CTGAAG 1 cut(s) 1221
AfaI GTAC 2 cut(s) 480, 832
AfiI CCNNNNNNNGG 3 cut(s) 425, 609, 981
AflIII ACRYGT 1 cut(s) 796
AgeI ACCGGT 1 cut(s) 609
AgsI TTSAA 5 cut(s) 499, 664, 674, 738, 1006
AjnI CCWGG 2 cut(s) 245, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 9 cut(s) 379, 564, 720, 767, 779, 850, 863, 1067, 1081
AluI AGCT 9 cut(s) 379, 564, 720, 767, 779, 850, 863, 1067, 1081
Alw21I GWGCWC 2 cut(s) 39, 1083
Alw26I GTCTC 3 cut(s) 25, 787, 903
AlwI GGATC 5 cut(s) 576, 589, 820, 1016, 1029
AoxI GGCC 1 cut(s) 1137
ApeKI GCWGC 3 cut(s) 720, 764, 767
ApoI RAATTY 2 cut(s) 675, 1001
AsiGI ACCGGT 1 cut(s) 609
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 489
AsuC2I CCSGG 3 cut(s) 493, 858, 1019
AsuHPI GGTGA 3 cut(s) 22, 146, 523
AvaII GGWCC 1 cut(s) 489
BalI TGGCCA 1 cut(s) 1139
BamHI GGATCC 2 cut(s) 581, 1021
BanII GRGCYC 1 cut(s) 1083
BauI CACGAG 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 39, 1083
BbvI GCAGC 3 cut(s) 707, 754, 776
BccI CCATC 5 cut(s) 244, 295, 351, 431, 960
BceAI ACGGC 1 cut(s) 371
BciT130I CCWGG 2 cut(s) 247, 591
BciVI GTATCC 1 cut(s) 217
BcnI CCSGG 3 cut(s) 493, 858, 1019
BcoDI GTCTC 3 cut(s) 25, 787, 903
BfaI CTAG 3 cut(s) 515, 761, 782
BfmI CTRYAG 3 cut(s) 462, 768, 969
BfuAI ACCTGC 2 cut(s) 238, 1036
BfuI GTATCC 1 cut(s) 217
BisI GCNGC 4 cut(s) 721, 765, 768, 983
BlsI GCNGC 4 cut(s) 722, 766, 769, 984
Bme1390I CCNGG 5 cut(s) 247, 493, 591, 858, 1019
Bme18I GGWCC 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 2 cut(s) 583, 1023
BmrFI CCNGG 5 cut(s) 247, 493, 591, 858, 1019
BmsI GCATC 4 cut(s) 322, 400, 742, 882
BoxI GACNNNNGTC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 6 cut(s) 107, 139, 134, 166, 1196, 1228
BpmI CTGGAG 1 cut(s) 866
BpuMI CCSGG 3 cut(s) 493, 858, 1019
BsaJI CCNNGG 2 cut(s) 246, 856
BsaWI WCCGGW 1 cut(s) 609
Bsc4I CCNNNNNNNGG 3 cut(s) 425, 609, 981
Bse118I RCCGGY 1 cut(s) 609
Bse3DI GCAATG 2 cut(s) 1065, 1271
BseBI CCWGG 2 cut(s) 247, 591
BseDI CCNNGG 2 cut(s) 246, 856
BseGI GGATG 3 cut(s) 274, 337, 873
BseLI CCNNNNNNNGG 3 cut(s) 425, 609, 981
BseMI GCAATG 2 cut(s) 1065, 1271
BseMII CTCAG 7 cut(s) 22, 36, 138, 252, 549, 1029, 1232
BseXI GCAGC 3 cut(s) 707, 754, 776
BsgI GTGCAG 1 cut(s) 1014
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 1 cut(s) 1139
BshTI ACCGGT 1 cut(s) 609
BsiHKAI GWGCWC 2 cut(s) 39, 1083
BsiSI CCGG 4 cut(s) 492, 610, 858, 1018
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 3 cut(s) 425, 609, 981
BsmAI GTCTC 3 cut(s) 25, 787, 903
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 1139
Bsp1286I GDGCHC 2 cut(s) 39, 1083
Bsp143I GATC 5 cut(s) 471, 509, 581, 812, 1021
BspACI CCGC 2 cut(s) 585, 982
BspANI GGCC 1 cut(s) 1139
BspCNI CTCAG 7 cut(s) 21, 35, 137, 253, 548, 1030, 1231
BspFNI CGCG 1 cut(s) 280
BspLI GGNNCC 2 cut(s) 583, 1023
BspMAI CTGCAG 1 cut(s) 772
BspMI ACCTGC 2 cut(s) 238, 1036
BspPI GGATC 5 cut(s) 576, 589, 820, 1016, 1029
BspQI GCTCTTC 3 cut(s) 44, 534, 915
BsrDI GCAATG 2 cut(s) 1065, 1271
BsrFI RCCGGY 1 cut(s) 609
BssAI RCCGGY 1 cut(s) 609
BssECI CCNNGG 2 cut(s) 246, 856
BssMI GATC 5 cut(s) 471, 509, 581, 812, 1021
BssNAI GTATAC 1 cut(s) 258
BssSI CACGAG 1 cut(s) 140
Bst1107I GTATAC 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 140
Bst2UI CCWGG 2 cut(s) 247, 591
Bst4CI ACNGT 5 cut(s) 34, 742, 826, 835, 937
Bst6I CTCTTC 4 cut(s) 44, 534, 915, 1197
BstDEI CTNAG 8 cut(s) 8, 22, 76, 124, 261, 535, 1038, 1218
BstF5I GGATG 3 cut(s) 274, 337, 873
BstFNI CGCG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 5 cut(s) 474, 512, 584, 815, 1024
BstMAI GTCTC 3 cut(s) 25, 787, 903
BstMBI GATC 5 cut(s) 471, 509, 581, 812, 1021
BstMWI GCNNNNNNNGC 6 cut(s) 77, 467, 761, 776, 879, 1064
BstNI CCWGG 2 cut(s) 247, 591
BstNSI RCATGY 1 cut(s) 800
BstPAI GACNNNNGTC 1 cut(s) 248
BstSCI CCNGG 5 cut(s) 245, 491, 589, 856, 1017
BstSFI CTRYAG 3 cut(s) 462, 768, 969
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 3 cut(s) 707, 754, 776
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 3 cut(s) 581, 812, 1021
BstYI RGATCY 3 cut(s) 581, 812, 1021
BstZ17I GTATAC 1 cut(s) 258
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 1139
BtsCI GGATG 3 cut(s) 274, 337, 873
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 246
BveI ACCTGC 2 cut(s) 238, 1036
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 609
Cfr13I GGNCC 1 cut(s) 489
CseI GACGC 2 cut(s) 185, 1064
CsiI ACCWGGT 1 cut(s) 589
Csp6I GTAC 2 cut(s) 479, 831
CspAI ACCGGT 1 cut(s) 609
CviAII CATG 5 cut(s) 526, 797, 1135, 1159, 1173
CviQI GTAC 2 cut(s) 479, 831
DdeI CTNAG 8 cut(s) 8, 22, 76, 124, 261, 535, 1038, 1218
DpnI GATC 5 cut(s) 473, 511, 583, 814, 1023
DpnII GATC 5 cut(s) 471, 509, 581, 812, 1021
EaeI YGGCCR 1 cut(s) 1137
Eam1104I CTCTTC 4 cut(s) 44, 534, 915, 1197
EarI CTCTTC 4 cut(s) 44, 534, 915, 1197
Ecl136II GAGCTC 1 cut(s) 1081
Eco24I GRGCYC 1 cut(s) 1083
Eco47I GGWCC 1 cut(s) 489
Eco53kI GAGCTC 1 cut(s) 1081
Eco57I CTGAAG 1 cut(s) 1221
EcoICRI GAGCTC 1 cut(s) 1081
EcoRI GAATTC 1 cut(s) 1001
EcoRII CCWGG 2 cut(s) 245, 589
EcoT38I GRGCYC 1 cut(s) 1083
FaeI CATG 5 cut(s) 529, 800, 1138, 1162, 1176
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 1 cut(s) 318
FatI CATG 5 cut(s) 525, 796, 1134, 1158, 1172
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 4 cut(s) 721, 765, 768, 983
FokI GGATG 3 cut(s) 281, 344, 860
FriOI GRGCYC 1 cut(s) 1083
Fsp4HI GCNGC 4 cut(s) 721, 765, 768, 983
FspBI CTAG 3 cut(s) 515, 761, 782
GlaI GCGC 1 cut(s) 279
GluI GCNGC 4 cut(s) 721, 765, 768, 983
GsuI CTGGAG 1 cut(s) 866
HaeIII GGCC 1 cut(s) 1139
HapII CCGG 4 cut(s) 492, 610, 858, 1018
HgaI GACGC 2 cut(s) 185, 1064
HhaI GCGC 1 cut(s) 280
Hin1II CATG 5 cut(s) 529, 800, 1138, 1162, 1176
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 6 cut(s) 143, 285, 306, 806, 987, 1124
HpaII CCGG 4 cut(s) 492, 610, 858, 1018
HphI GGTGA 3 cut(s) 22, 146, 523
Hpy166II GTNNAC 5 cut(s) 175, 188, 258, 531, 1015
Hpy188I TCNGA 6 cut(s) 11, 223, 538, 581, 1000, 1039
Hpy188III TCNNGA 7 cut(s) 140, 374, 426, 810, 845, 893, 1220
Hpy8I GTNNAC 5 cut(s) 175, 188, 258, 531, 1015
HpyAV CCTTC 5 cut(s) 73, 259, 356, 567, 705
HpyCH4III ACNGT 5 cut(s) 34, 742, 826, 835, 937
HpyCH4V TGCA 9 cut(s) 71, 392, 630, 657, 770, 962, 1031, 1262, 1276
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 467, 761, 776, 879, 1064
HpyF3I CTNAG 8 cut(s) 8, 22, 76, 124, 261, 535, 1038, 1218
Hsp92II CATG 5 cut(s) 529, 800, 1138, 1162, 1176
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 5 cut(s) 471, 509, 581, 812, 1021
LguI GCTCTTC 3 cut(s) 44, 534, 915
LmnI GCTCC 2 cut(s) 847, 860
Lsp1109I GCAGC 3 cut(s) 707, 754, 776
LweI GCATC 4 cut(s) 322, 400, 742, 882
MabI ACCWGGT 1 cut(s) 589
MaeI CTAG 3 cut(s) 515, 761, 782
MaeIII GTNAC 7 cut(s) 144, 241, 341, 593, 988, 1175, 1184
MalI GATC 5 cut(s) 473, 511, 583, 814, 1023
MboI GATC 5 cut(s) 471, 509, 581, 812, 1021
MflI RGATCY 3 cut(s) 581, 812, 1021
MhlI GDGCHC 2 cut(s) 39, 1083
MlsI TGGCCA 1 cut(s) 1139
MluCI AATT 9 cut(s) 135, 625, 675, 773, 939, 963, 1001, 1097, 1265
MluNI TGGCCA 1 cut(s) 1139
MlyI GAGTC 3 cut(s) 152, 300, 996
MnlI CCTC 7 cut(s) 15, 65, 109, 322, 544, 698, 1222
Mox20I TGGCCA 1 cut(s) 1139
MscI TGGCCA 1 cut(s) 1139
MseI TTAA 3 cut(s) 291, 716, 1088
MslI CAYNNNNRTG 3 cut(s) 87, 408, 1276
Msp20I TGGCCA 1 cut(s) 1139
MspA1I CMGCKG 1 cut(s) 767
MspI CCGG 4 cut(s) 492, 610, 858, 1018
MspR9I CCNGG 5 cut(s) 247, 493, 591, 858, 1019
MvaI CCWGG 2 cut(s) 247, 591
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 6 cut(s) 77, 467, 761, 776, 879, 1064
NciI CCSGG 3 cut(s) 493, 858, 1019
NdeII GATC 5 cut(s) 471, 509, 581, 812, 1021
NlaIII CATG 5 cut(s) 529, 800, 1138, 1162, 1176
NlaIV GGNNCC 2 cut(s) 583, 1023
NmeAIII GCCGAG 1 cut(s) 1136
NmuCI GTSAC 4 cut(s) 144, 241, 593, 988
NspI RCATGY 1 cut(s) 800
PaqCI CACCTGC 2 cut(s) 238, 1036
PciI ACATGT 1 cut(s) 796
PciSI GCTCTTC 3 cut(s) 44, 534, 915
PfeI GAWTC 3 cut(s) 285, 806, 1124
PflMI CCANNNNNTGG 1 cut(s) 425
PinAI ACCGGT 1 cut(s) 609
PkrI GCNGC 4 cut(s) 722, 766, 769, 984
PleI GAGTC 3 cut(s) 151, 300, 995
PpsI GAGTC 3 cut(s) 151, 300, 995
PscI ACATGT 1 cut(s) 796
PshAI GACNNNNGTC 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 1083
Psp6I CCWGG 2 cut(s) 245, 589
PspGI CCWGG 2 cut(s) 245, 589
PspN4I GGNNCC 2 cut(s) 583, 1023
PspPI GGNCC 1 cut(s) 489
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 3 cut(s) 581, 812, 1021
PvuII CAGCTG 1 cut(s) 767
RsaI GTAC 2 cut(s) 480, 832
RsaNI GTAC 2 cut(s) 479, 831
RseI CAYNNNNRTG 3 cut(s) 87, 408, 1276
SacI GAGCTC 1 cut(s) 1083
SapI GCTCTTC 3 cut(s) 44, 534, 915
SaqAI TTAA 3 cut(s) 291, 716, 1088
SatI GCNGC 4 cut(s) 721, 765, 768, 983
Sau3AI GATC 5 cut(s) 471, 509, 581, 812, 1021
Sau96I GGNCC 1 cut(s) 489
SchI GAGTC 3 cut(s) 152, 300, 996
ScrFI CCNGG 5 cut(s) 247, 493, 591, 858, 1019
SduI GDGCHC 2 cut(s) 39, 1083
SexAI ACCWGGT 1 cut(s) 589
SfaNI GCATC 4 cut(s) 322, 400, 742, 882
SfcI CTRYAG 3 cut(s) 462, 768, 969
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 3 cut(s) 87, 408, 1276
Sse9I AATT 9 cut(s) 135, 625, 675, 773, 939, 963, 1001, 1097, 1265
SsiI CCGC 2 cut(s) 585, 982
SspMI CTAG 3 cut(s) 515, 761, 782
SstI GAGCTC 1 cut(s) 1083
StyD4I CCNGG 5 cut(s) 245, 491, 589, 856, 1017
TaaI ACNGT 5 cut(s) 34, 742, 826, 835, 937
TaqI TCGA 4 cut(s) 212, 355, 900, 1229
TasI AATT 9 cut(s) 135, 625, 675, 773, 939, 963, 1001, 1097, 1265
TatI WGTACW 1 cut(s) 478
TauI GCSGC 1 cut(s) 985
TfiI GAWTC 3 cut(s) 285, 806, 1124
Tru1I TTAA 3 cut(s) 291, 716, 1088
Tru9I TTAA 3 cut(s) 291, 716, 1088
TscAI CASTG 2 cut(s) 73, 246
TseFI GTSAC 4 cut(s) 144, 241, 593, 988
TseI GCWGC 3 cut(s) 720, 764, 767
Tsp45I GTSAC 4 cut(s) 144, 241, 593, 988
TspDTI ATGAA 8 cut(s) 105, 219, 277, 933, 1059, 1116, 1123, 1156
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 2 cut(s) 73, 246
Van91I CCANNNNNTGG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 489
XapI RAATTY 2 cut(s) 675, 1001
XceI RCATGY 1 cut(s) 800
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 3 cut(s) 515, 761, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.