Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8283127.1

Orthogroup ID

OG0011917

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 853

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8283127.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ttcttcactatcagttgacgctcaaagtttacagaaacagattgatgaactttcgagtttttcggatacacctgccccatcagtgaccagggtcttgtatactgagaaggatgtgttggcacgtagattcattaaaaacttgatgggactctctggtttgtccgttagagaggatgctgttggtaacatatttggtcgatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0004848 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01120 map00230 map01100 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

66

Amino Acids

7.22

Weight (kDa)

6.07

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43600
fragaria_vesca	FvH4_4g02810
malus_domestica	MD13G1207900.v1.1
prunus_persica	Prupe.1G031400_v2.0.a1
pyrus_communis	pycom13g18000
rosa_chinensis	RchiOBHm_Chr4g0390621 RchiOBHm_Chr4g0390681
rosa_laevigata	RLG00000009913
rosa_multiflora	Rmu_co8283127.1_g000001 Rmu_sc0000171.1_g000034 Rmu_sc0001380.1_g000018
rosa_roxburghii	Rroxscaffold_1G00049440 Rroxscaffold_5G00336590
rosa_rugosa	Rorug03G0331300 Rorug03G0331400
rosa_samantha	Rh4AG032900 Rh4BG026800 Rh4CG036700 Rh4DG029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
BccI	CCATC	2 cut(s)	86, 137
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	164
BoxI	GACNNNNGTC	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	116, 179
BseMII	CTCAG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	88
BssNAI	GTATAC	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	116, 179
BstNI	CCWGG	1 cut(s)	89
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	87
BstZ17I	GTATAC	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	116, 179
BtsIMutI	CAGTG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	80
CseI	GACGC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	87
FaiI	YATR	2 cut(s)	100, 189
FaqI	GGGAC	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	99
FokI	GGATG	2 cut(s)	123, 186
HgaI	GACGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	17
HindII	GTYRAC	1 cut(s)	17
HinfI	GANTC	2 cut(s)	127, 148
Hpy166II	GTNNAC	3 cut(s)	17, 30, 100
Hpy188I	TCNGA	1 cut(s)	65
Hpy8I	GTNNAC	3 cut(s)	17, 30, 100
HpyAV	CCTTC	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	122
LpnPI	CCDG	4 cut(s)	74, 85, 101, 139
LweI	GCATC	1 cut(s)	164
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	2 cut(s)	83, 183
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	83
PaqCI	CACCTGC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	123
PshAI	GACNNNNGTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	133
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	2 cut(s)	74, 125
SfaNI	GCATC	1 cut(s)	164
SgeI	CNNG	8 cut(s)	67, 84, 100, 101, 107, 133, 152, 166
StyD4I	CCNGG	1 cut(s)	87
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	2 cut(s)	54, 197
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	133
Tru9I	TTAA	1 cut(s)	133
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	61, 119
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.