Rmu_sc0001380.1_g000018

Hydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001380.1
Physical Location & Seq
Reverse (-)
98340 .. 103520
5181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001380.1_g000018.1.cds

Sequence Viewer

Length: 1398 bp
atgcctctcagattatctctctcatcactcatcgtgctctgttccttcactgcaatcatagctcataacaatgaagacccaacaatcaaaacaatggaggatttctcaggctacccaattcacgagtcacactctcacccttcttcactatcagttgacgctcaaagtttacagaaacagattgatgaactttcgagtttttcggatacacctgccccatcagtgaccagggtcttgtatactgagaaagatgtgttggcacgtagattcattaaaaacttgatgggactctctggtttgtccgttagagaggatgctgttggtaacatatttggtcgatgggaaggctctaatccagagctttctgccgtcgcaacaggttctcacattgatgccattccatactctggaaagtatgatggagtcgtaggtgttttgggtgctatagaagcgatcaatgtactaataaggtccgggttcaaacctaaacgatcactagaagttatcatgttcacctcagaagagcctacacgctttggaataagctgtctgggaagccgcttaatggcagggagtgagacacttgctgaagctctcaagaccacagttgatggtcaaaatatatccttcctagatgcatcacaatctgctggctacactaaagatcataatgatatctctagtgtgttcttgaaaaaaggaagctactctgcttttgtggaattgcatatcgagcagggtcctcttctggaggaggaaggtataccaattggcattgtaactgccattgcagccccagcaagcataaaagtggagtttcagggaaatggaggccacgctggtgctgtcctgatgccaaatagaaatgatgctggactagcagctgcagaattagcgctagcagtggagagacatgtattagaatctggatctattgatactgttggtacagttggtattctggagctacaccccggagccatcaacagcatcccaagcaaatcacatctggaaattgacacaagagacattgatgaagagcgaagaaacaccgtaattgagaaaatccatcaatctgcaatttctatagccagaaagcggcgagtcagtctatctgaattcaaaattgtaaaccaggatccacctgcactttctgagaaatcaatacttgacgcaatggtagcttcatcaaaagacctcaacttaacccacaagttgatgattagccgagcttaccacgattcattgttcatggccagaatatccccaatgggcatgatattcattccatgttacaaaggttacagccataaacctgaagagtattcctctactcaggacatatcgaatggggtcaaggtattagccctgacccttgcaaaattgtcattgcagtga

Protein Analysis

465

Amino Acids

50.24

Weight (kDa)

5.7

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 220, 1153
Acc36I ACCTGC 2 cut(s) 220, 1153
AccB7I CCANNNNNTGG 1 cut(s) 407
AccI GTMKAC 2 cut(s) 239, 763
AciI CCGC 2 cut(s) 559, 1099
AclWI GGATC 3 cut(s) 937, 1133, 1146
AcoI YGGCCR 1 cut(s) 1254
AcsI RAATTY 1 cut(s) 1118
AcuI CTGAAG 2 cut(s) 609, 1338
AfaI GTAC 2 cut(s) 462, 949
AfeI AGCGCT 1 cut(s) 897
AfiI CCNNNNNNNGG 3 cut(s) 407, 565, 1098
AflIII ACRYGT 1 cut(s) 913
AgsI TTSAA 3 cut(s) 481, 694, 1123
AjnI CCWGG 2 cut(s) 227, 1134
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AleI CACNNNNGTG 1 cut(s) 840
AluBI AGCT 9 cut(s) 62, 361, 546, 593, 705, 884, 967, 1184, 1232
AluI AGCT 9 cut(s) 62, 361, 546, 593, 705, 884, 967, 1184, 1232
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 3 cut(s) 572, 904, 1020
AlwI GGATC 3 cut(s) 937, 1133, 1146
Aor51HI AGCGCT 1 cut(s) 897
AoxI GGCC 2 cut(s) 832, 1254
ApeKI GCWGC 3 cut(s) 791, 881, 884
ApoI RAATTY 1 cut(s) 1118
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 2 cut(s) 471, 740
AsuC2I CCSGG 2 cut(s) 475, 975
AsuHPI GGTGA 2 cut(s) 128, 505
AsuNHI GCTAGC 1 cut(s) 898
AvaII GGWCC 2 cut(s) 471, 740
BalI TGGCCA 1 cut(s) 1256
BamHI GGATCC 1 cut(s) 1138
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 803, 871, 893
BccI CCATC 7 cut(s) 226, 277, 333, 413, 605, 989, 1077
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 2 cut(s) 229, 1136
BciVI GTATCC 1 cut(s) 199
BcnI CCSGG 2 cut(s) 475, 975
BcoDI GTCTC 3 cut(s) 572, 904, 1020
BfaI CTAG 5 cut(s) 497, 632, 681, 878, 899
BfmI CTRYAG 3 cut(s) 444, 885, 1086
BfoI RGCGCY 1 cut(s) 899
BfuAI ACCTGC 2 cut(s) 220, 1153
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 5 cut(s) 559, 792, 882, 885, 1100
BlsI GCNGC 5 cut(s) 560, 793, 883, 886, 1101
Bme1390I CCNGG 4 cut(s) 229, 475, 975, 1136
Bme18I GGWCC 2 cut(s) 471, 740
BmgT120I GGNCC 2 cut(s) 471, 740
BmiI GGNNCC 3 cut(s) 741, 979, 1140
BmrFI CCNGG 4 cut(s) 229, 475, 975, 1136
BmsI GCATC 7 cut(s) 304, 382, 625, 647, 843, 859, 999
BmtI GCTAGC 1 cut(s) 902
BoxI GACNNNNGTC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 6 cut(s) 89, 121, 116, 148, 1313, 1345
BpmI CTGGAG 2 cut(s) 770, 983
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 2 cut(s) 475, 975
BsaAI YACGTR 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 228, 973
Bsc4I CCNNNNNNNGG 3 cut(s) 407, 565, 1098
Bse3DI GCAATG 3 cut(s) 786, 1182, 1388
BseBI CCWGG 2 cut(s) 229, 1136
BseDI CCNNGG 2 cut(s) 228, 973
BseGI GGATG 2 cut(s) 319, 990
BseLI CCNNNNNNNGG 3 cut(s) 407, 565, 1098
BseMI GCAATG 3 cut(s) 786, 1182, 1388
BseMII CTCAG 6 cut(s) 22, 120, 234, 531, 1146, 1349
BseRI GAGGAG 1 cut(s) 767
BseXI GCAGC 3 cut(s) 803, 871, 893
BseYI CCCAGC 1 cut(s) 796
BsgI GTGCAG 1 cut(s) 1131
BshFI GGCC 2 cut(s) 834, 1256
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 2 cut(s) 474, 975
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 3 cut(s) 407, 565, 1098
BsmAI GTCTC 3 cut(s) 572, 904, 1020
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 2 cut(s) 834, 1256
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 5 cut(s) 453, 491, 664, 929, 1138
BspACI CCGC 2 cut(s) 559, 1099
BspANI GGCC 2 cut(s) 834, 1256
BspCNI CTCAG 6 cut(s) 21, 119, 235, 530, 1147, 1348
BspLI GGNNCC 3 cut(s) 741, 979, 1140
BspMAI CTGCAG 1 cut(s) 889
BspMI ACCTGC 2 cut(s) 220, 1153
BspOI GCTAGC 1 cut(s) 902
BspPI GGATC 3 cut(s) 937, 1133, 1146
BspQI GCTCTTC 2 cut(s) 516, 1032
BsrDI GCAATG 3 cut(s) 786, 1182, 1388
BssECI CCNNGG 2 cut(s) 228, 973
BssMI GATC 5 cut(s) 453, 491, 664, 929, 1138
BssNAI GTATAC 2 cut(s) 240, 764
BssSI CACGAG 1 cut(s) 122
Bst1107I GTATAC 2 cut(s) 240, 764
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 2 cut(s) 229, 1136
Bst4CI ACNGT 4 cut(s) 607, 943, 952, 1054
Bst6I CTCTTC 4 cut(s) 516, 750, 1032, 1314
BstBAI YACGTR 1 cut(s) 263
BstC8I GCNNGC 3 cut(s) 652, 802, 900
BstDEI CTNAG 6 cut(s) 8, 106, 243, 517, 1155, 1335
BstF5I GGATG 2 cut(s) 319, 990
BstH2I RGCGCY 1 cut(s) 899
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 5 cut(s) 456, 494, 667, 932, 1141
BstMAI GTCTC 3 cut(s) 572, 904, 1020
BstMBI GATC 5 cut(s) 453, 491, 664, 929, 1138
BstMWI GCNNNNNNNGC 9 cut(s) 59, 449, 733, 791, 797, 878, 893, 996, 1181
BstNI CCWGG 2 cut(s) 229, 1136
BstNSI RCATGY 1 cut(s) 917
BstPAI GACNNNNGTC 1 cut(s) 230
BstSCI CCNGG 4 cut(s) 227, 473, 973, 1134
BstSFI CTRYAG 3 cut(s) 444, 885, 1086
BstV1I GCAGC 3 cut(s) 803, 871, 893
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 929, 1138
BstYI RGATCY 2 cut(s) 929, 1138
BstZ17I GTATAC 2 cut(s) 240, 764
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 2 cut(s) 834, 1256
BtsCI GGATG 2 cut(s) 319, 990
BtsI GCAGTG 2 cut(s) 48, 909
BtsIMutI CAGTG 3 cut(s) 48, 228, 909
BveI ACCTGC 2 cut(s) 220, 1153
Cac8I GCNNGC 3 cut(s) 652, 802, 900
CfoI GCGC 1 cut(s) 898
Cfr13I GGNCC 2 cut(s) 471, 740
CseI GACGC 2 cut(s) 167, 1181
Csp6I GTAC 2 cut(s) 461, 948
CviAII CATG 5 cut(s) 508, 914, 1252, 1276, 1290
CviQI GTAC 2 cut(s) 461, 948
DdeI CTNAG 6 cut(s) 8, 106, 243, 517, 1155, 1335
DpnI GATC 5 cut(s) 455, 493, 666, 931, 1140
DpnII GATC 5 cut(s) 453, 491, 664, 929, 1138
EaeI YGGCCR 1 cut(s) 1254
Eam1104I CTCTTC 4 cut(s) 516, 750, 1032, 1314
EarI CTCTTC 4 cut(s) 516, 750, 1032, 1314
Eco32I GATATC 1 cut(s) 676
Eco47I GGWCC 2 cut(s) 471, 740
Eco47III AGCGCT 1 cut(s) 897
Eco57I CTGAAG 2 cut(s) 609, 1338
EcoO109I RGGNCCY 1 cut(s) 740
EcoRI GAATTC 1 cut(s) 1118
EcoRII CCWGG 2 cut(s) 227, 1134
EcoRV GATATC 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 640
FaeI CATG 5 cut(s) 511, 917, 1255, 1279, 1293
FaqI GGGAC 1 cut(s) 300
FatI CATG 5 cut(s) 507, 913, 1251, 1275, 1289
FblI GTMKAC 2 cut(s) 239, 763
Fnu4HI GCNGC 5 cut(s) 559, 792, 882, 885, 1100
FokI GGATG 2 cut(s) 326, 977
Fsp4HI GCNGC 5 cut(s) 559, 792, 882, 885, 1100
FspBI CTAG 5 cut(s) 497, 632, 681, 878, 899
GlaI GCGC 1 cut(s) 897
GluI GCNGC 5 cut(s) 559, 792, 882, 885, 1100
GsaI CCCAGC 1 cut(s) 800
GsuI CTGGAG 2 cut(s) 770, 983
HaeII RGCGCY 1 cut(s) 899
HaeIII GGCC 2 cut(s) 834, 1256
HapII CCGG 2 cut(s) 474, 975
HgaI GACGC 2 cut(s) 167, 1181
HhaI GCGC 1 cut(s) 898
Hin1II CATG 5 cut(s) 511, 917, 1255, 1279, 1293
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 7 cut(s) 125, 267, 288, 423, 923, 1104, 1241
HpaII CCGG 2 cut(s) 474, 975
HphI GGTGA 2 cut(s) 128, 505
Hpy166II GTNNAC 6 cut(s) 157, 170, 240, 513, 764, 1132
Hpy188I TCNGA 5 cut(s) 11, 205, 520, 1117, 1156
Hpy8I GTNNAC 6 cut(s) 157, 170, 240, 513, 764, 1132
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 5 cut(s) 55, 150, 338, 637, 752
HpyCH4III ACNGT 4 cut(s) 607, 943, 952, 1054
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 9 cut(s) 53, 638, 727, 791, 887, 1079, 1148, 1379, 1393
HpyF10VI GCNNNNNNNGC 9 cut(s) 59, 449, 733, 791, 797, 878, 893, 996, 1181
HpyF3I CTNAG 6 cut(s) 8, 106, 243, 517, 1155, 1335
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 5 cut(s) 511, 917, 1255, 1279, 1293
HspAI GCGC 1 cut(s) 896
Kzo9I GATC 5 cut(s) 453, 491, 664, 929, 1138
LguI GCTCTTC 2 cut(s) 516, 1032
LmnI GCTCC 2 cut(s) 964, 977
Lsp1109I GCAGC 3 cut(s) 803, 871, 893
LweI GCATC 7 cut(s) 304, 382, 625, 647, 843, 859, 999
MaeI CTAG 5 cut(s) 497, 632, 681, 878, 899
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 6 cut(s) 126, 223, 323, 778, 1292, 1301
MalI GATC 5 cut(s) 455, 493, 666, 931, 1140
MboI GATC 5 cut(s) 453, 491, 664, 929, 1138
MboII GAAGA 7 cut(s) 86, 135, 533, 737, 1049, 1056, 1331
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 2 cut(s) 929, 1138
MhlI GDGCHC 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 1256
MluNI TGGCCA 1 cut(s) 1256
MlyI GAGTC 4 cut(s) 134, 282, 432, 1113
Mox20I TGGCCA 1 cut(s) 1256
Mph1103I ATGCAT 1 cut(s) 640
MscI TGGCCA 1 cut(s) 1256
MseI TTAA 3 cut(s) 273, 563, 1205
MslI CAYNNNNRTG 5 cut(s) 69, 390, 809, 840, 1393
Msp20I TGGCCA 1 cut(s) 1256
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 2 cut(s) 474, 975
MspR9I CCNGG 4 cut(s) 229, 475, 975, 1136
MunI CAATTG 1 cut(s) 768
MvaI CCWGG 2 cut(s) 229, 1136
MwoI GCNNNNNNNGC 9 cut(s) 59, 449, 733, 791, 797, 878, 893, 996, 1181
NciI CCSGG 2 cut(s) 475, 975
NdeII GATC 5 cut(s) 453, 491, 664, 929, 1138
NheI GCTAGC 1 cut(s) 898
NlaIII CATG 5 cut(s) 511, 917, 1255, 1279, 1293
NlaIV GGNNCC 3 cut(s) 741, 979, 1140
NmeAIII GCCGAG 1 cut(s) 1253
NmuCI GTSAC 2 cut(s) 126, 223
NsiI ATGCAT 1 cut(s) 640
NspI RCATGY 1 cut(s) 917
OliI CACNNNNGTG 1 cut(s) 840
PaqCI CACCTGC 2 cut(s) 220, 1153
PciI ACATGT 1 cut(s) 913
PciSI GCTCTTC 2 cut(s) 516, 1032
PfeI GAWTC 3 cut(s) 267, 923, 1241
PflMI CCANNNNNTGG 1 cut(s) 407
PkrI GCNGC 5 cut(s) 560, 793, 883, 886, 1101
PleI GAGTC 4 cut(s) 133, 282, 431, 1112
PpsI GAGTC 4 cut(s) 133, 282, 431, 1112
Ppu21I YACGTR 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 740
PscI ACATGT 1 cut(s) 913
PshAI GACNNNNGTC 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 740
Psp6I CCWGG 2 cut(s) 227, 1134
PspFI CCCAGC 1 cut(s) 796
PspGI CCWGG 2 cut(s) 227, 1134
PspN4I GGNNCC 3 cut(s) 741, 979, 1140
PspPI GGNCC 2 cut(s) 471, 740
PspPPI RGGWCCY 1 cut(s) 740
PstI CTGCAG 1 cut(s) 889
PsuI RGATCY 2 cut(s) 929, 1138
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 2 cut(s) 462, 949
RsaNI GTAC 2 cut(s) 461, 948
RseI CAYNNNNRTG 5 cut(s) 69, 390, 809, 840, 1393
SapI GCTCTTC 2 cut(s) 516, 1032
SaqAI TTAA 3 cut(s) 273, 563, 1205
SatI GCNGC 5 cut(s) 559, 792, 882, 885, 1100
Sau3AI GATC 5 cut(s) 453, 491, 664, 929, 1138
Sau96I GGNCC 2 cut(s) 471, 740
SchI GAGTC 4 cut(s) 134, 282, 432, 1113
ScrFI CCNGG 4 cut(s) 229, 475, 975, 1136
SduI GDGCHC 1 cut(s) 39
SfaNI GCATC 7 cut(s) 304, 382, 625, 647, 843, 859, 999
SfcI CTRYAG 3 cut(s) 444, 885, 1086
SinI GGWCC 2 cut(s) 471, 740
SmiMI CAYNNNNRTG 5 cut(s) 69, 390, 809, 840, 1393
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
SsiI CCGC 2 cut(s) 559, 1099
SspMI CTAG 5 cut(s) 497, 632, 681, 878, 899
StyD4I CCNGG 4 cut(s) 227, 473, 973, 1134
TaaI ACNGT 4 cut(s) 607, 943, 952, 1054
TaiI ACGT 1 cut(s) 265
TaqI TCGA 4 cut(s) 194, 337, 732, 1346
TatI WGTACW 1 cut(s) 460
TauI GCSGC 2 cut(s) 561, 1102
TfiI GAWTC 3 cut(s) 267, 923, 1241
Tru1I TTAA 3 cut(s) 273, 563, 1205
Tru9I TTAA 3 cut(s) 273, 563, 1205
TscAI CASTG 3 cut(s) 55, 228, 909
TseFI GTSAC 2 cut(s) 126, 223
TseI GCWGC 3 cut(s) 791, 881, 884
Tsp45I GTSAC 2 cut(s) 126, 223
TspDTI ATGAA 8 cut(s) 87, 201, 259, 1050, 1176, 1233, 1240, 1273
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 3 cut(s) 55, 228, 909
Van91I CCANNNNNTGG 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 471, 740
XapI RAATTY 1 cut(s) 1118
XceI RCATGY 1 cut(s) 917
XmiI GTMKAC 2 cut(s) 239, 763
XspI CTAG 5 cut(s) 497, 632, 681, 878, 899
Zsp2I ATGCAT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.