MD13G1207900.v1.1

Hydrolase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
19064588 .. 19068959
4372 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1207900.v1.1.491

Sequence Viewer

Length: 1428 bp
ATGTCTCTGAATATCCCTAGCTCTACAATTCTTCTGCTCCTCCTCCTCCTCTGCTCCTTCACTGCAATCTCTGCTCACGAAAATGAAGACGCAACAATCAAAACAATGGAGGATTTCTCTGGCTACCCATTTCACGAATCACACTCTACCTCTCAGTCTCACACCACTGTTTCTTTACTCTCAGTTGAGACTCAAAGTTTGCAGAAACAGATTGATGAACTTTCGACTTATTCGGATACACCTGCCCCATCAGTTACCAGGGTCTTGTATACTGAGAAAGATGTATTGGCTCGTAGGTTCATCAAAAACTTGATGGGACTTTCTGGTCTATCTGTTAGAGAGGATGCTGTTGGTAACATATTTGGTCGGTGGGAAGGCTATAATCCAGATCTTTCTGCAGTTGCGACAGGTTCTCACATTGATGCCATTCCATACTCTGGAAAGTATGATGGTGTTGTGGGTGTTCTAGGTGCTATAGAAGCCATCAATGTACTGAAAAGGTCTGGCTTCAAACCCAAAAGATCACTGGAAGTTATCTTGTTCACCTCGGAAGAGCCTACGCGCTTTGGAATCAGCTGTCTAGGAAGCCGCTTAATGGCAGGGATTGAGGCCCTGGCTAATGCTCTGAAGACAACAGTTGATGGTCAAAATGTATCCTTCTTAGATGCTGCAGGATCTGCTGGCTACACTAAACATGAAGATGCTTTATTGAGTGTGTTCTTAAAAAAAGAAAGCTACTCTGGTTTTGTGGAATTGCATATTGAGCAAGGCCCCATTTTGGAGGAGGAAGGTATATCAATTGGTATTGTAACTGCCATTGCAGCCCCAGCAAGTATAAAAGTGGAGTTTGAAGGCAATGGAGGCCATGCCGGTGCTGTCCTAATGCCAAATAGAAATGATGCTGGACTAGCAGCTGCAGAATTAGCACTAGCTGTTGAGAAACACGTATTGGAATCTGGGTCTGTTGATACTGTCGGTACAGTTGGTATTCTGGAGCTACATCCTGGAGCCATTAACAGCATCCCAAGTAAATCGCATCTGGAAATTGACACAAGAGATATTGATGAAGAGCGAAGAAACATTGTAATTGAGAAAATTCATCGATCTGCAATTGCTATAGCAAGTAAACGTGGGGTCAGTCTATCAGAGTTCAAAATCATAAATCAGGATCCGCCAGCAATCTCTGATAAATCAATAATTGAGGCAATGGAAGCTTCATCGAAAGAGCTAAACTTAACGTACAAGTTCATGATTAGCCGAGCTTACCACGATTCATTGTTCATGGCCAGGGTTTCTCCGATGGGTATGATATTCATTCCATGTTACAAAGGTTACAGCCATAAGCCTGAAGAATATGCATCCATTCAGGATATATCTAACGGGGTCAGGGTATTAGCATTGACCCTAGCAAAGCTGTCATTGCAGTGA

Protein Analysis

476

Amino Acids

51.28

Weight (kDa)

5.38

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M28 PF04389 119 - 203 4.3e-08 Peptidase family M28
Peptidase_M20 PF01546 136 - 470 1.2e-26 Peptidase family M20/M25/M40
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 250
AasI GACNNNNNNGTC 1 cut(s) 324
Acc36I ACCTGC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 437
AccI GTMKAC 1 cut(s) 269
AccII CGCG 1 cut(s) 562
AciI CCGC 2 cut(s) 589, 1172
AclWI GGATC 3 cut(s) 682, 1163, 1176
AcoI YGGCCR 1 cut(s) 1284
AcsI RAATTY 1 cut(s) 1095
AcuI CTGAAG 2 cut(s) 647, 1368
AfaI GTAC 3 cut(s) 492, 979, 1241
AfiI CCNNNNNNNGG 3 cut(s) 437, 595, 778
AflIII ACRYGT 1 cut(s) 943
AgsI TTSAA 3 cut(s) 511, 851, 1153
AjnI CCWGG 4 cut(s) 257, 612, 1003, 1286
AjuI GAANNNNNNNTTGG 4 cut(s) 269, 301, 932, 964
Alw26I GTCTC 3 cut(s) 9, 162, 182
AlwI GGATC 3 cut(s) 682, 1163, 1176
AlwNI CAGNNNCTG 1 cut(s) 677
AoxI GGCC 4 cut(s) 609, 769, 862, 1284
ApeKI GCWGC 4 cut(s) 668, 821, 911, 914
ApoI RAATTY 1 cut(s) 1095
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 2 cut(s) 610, 770
AsuHPI GGTGA 1 cut(s) 535
BalI TGGCCA 1 cut(s) 1286
BamHI GGATCC 1 cut(s) 1168
BbsI GAAGAC 2 cut(s) 93, 635
BbvI GCAGC 4 cut(s) 655, 833, 901, 923
BccI CCATC 6 cut(s) 256, 307, 443, 491, 635, 1294
BciT130I CCWGG 4 cut(s) 259, 614, 1005, 1288
BciVI GTATCC 2 cut(s) 229, 664
BcoDI GTCTC 3 cut(s) 9, 162, 182
BfaI CTAG 6 cut(s) 18, 467, 581, 908, 929, 1406
BfmI CTRYAG 5 cut(s) 396, 474, 669, 915, 1116
BfuAI ACCTGC 1 cut(s) 250
BfuI GTATCC 2 cut(s) 229, 664
BglII AGATCT 1 cut(s) 388
BisI GCNGC 5 cut(s) 589, 669, 822, 912, 915
BlsI GCNGC 5 cut(s) 590, 670, 823, 913, 916
Bme1390I CCNGG 4 cut(s) 259, 614, 1005, 1288
BmgT120I GGNCC 2 cut(s) 610, 770
BmiI GGNNCC 3 cut(s) 772, 1009, 1170
BmrFI CCNGG 4 cut(s) 259, 614, 1005, 1288
BmsI GCATC 8 cut(s) 334, 412, 655, 691, 889, 1029, 1045, 1367
BpiI GAAGAC 2 cut(s) 93, 635
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 2 cut(s) 1013, 1026
Bsa29I ATCGAT 1 cut(s) 1102
BsaAI YACGTR 1 cut(s) 946
BsaJI CCNNGG 4 cut(s) 258, 546, 612, 1287
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 595, 778
Bse118I RCCGGY 1 cut(s) 869
Bse1I ACTGG 1 cut(s) 531
Bse3DI GCAATG 4 cut(s) 816, 862, 1212, 1418
BseBI CCWGG 4 cut(s) 259, 614, 1005, 1288
BseCI ATCGAT 1 cut(s) 1102
BseDI CCNNGG 4 cut(s) 258, 546, 612, 1287
BseGI GGATG 4 cut(s) 349, 1000, 1020, 1358
BseLI CCNNNNNNNGG 3 cut(s) 437, 595, 778
BseMI GCAATG 4 cut(s) 816, 862, 1212, 1418
BseMII CTCAG 3 cut(s) 167, 195, 264
BseNI ACTGG 1 cut(s) 531
BseRI GAGGAG 5 cut(s) 29, 32, 35, 38, 797
BseXI GCAGC 4 cut(s) 655, 833, 901, 923
BseYI CCCAGC 1 cut(s) 826
Bsh1236I CGCG 1 cut(s) 562
BshFI GGCC 4 cut(s) 611, 771, 864, 1286
BshVI ATCGAT 1 cut(s) 1102
BsiSI CCGG 1 cut(s) 870
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 3 cut(s) 437, 595, 778
BsmAI GTCTC 3 cut(s) 9, 162, 182
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 4 cut(s) 611, 771, 864, 1286
Bsp143I GATC 5 cut(s) 388, 521, 674, 1103, 1168
BspACI CCGC 2 cut(s) 589, 1172
BspANI GGCC 4 cut(s) 611, 771, 864, 1286
BspCNI CTCAG 3 cut(s) 166, 194, 265
BspDI ATCGAT 1 cut(s) 1102
BspFNI CGCG 1 cut(s) 562
BspHI TCATGA 1 cut(s) 1248
BspLI GGNNCC 3 cut(s) 772, 1009, 1170
BspMAI CTGCAG 3 cut(s) 400, 673, 919
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 3 cut(s) 682, 1163, 1176
BspQI GCTCTTC 2 cut(s) 546, 1062
BsrDI GCAATG 4 cut(s) 816, 862, 1212, 1418
BsrFI RCCGGY 1 cut(s) 869
BsrI ACTGG 1 cut(s) 531
BssAI RCCGGY 1 cut(s) 869
BssECI CCNNGG 4 cut(s) 258, 546, 612, 1287
BssMI GATC 5 cut(s) 388, 521, 674, 1103, 1168
BssNAI GTATAC 1 cut(s) 270
Bst1107I GTATAC 1 cut(s) 270
Bst2UI CCWGG 4 cut(s) 259, 614, 1005, 1288
Bst4CI ACNGT 4 cut(s) 169, 637, 973, 982
Bst6I CTCTTC 2 cut(s) 546, 1062
BstAPI GCANNNNNTGC 2 cut(s) 71, 677
BstBAI YACGTR 1 cut(s) 946
BstC8I GCNNGC 2 cut(s) 682, 1176
BstDEI CTNAG 4 cut(s) 153, 181, 273, 661
BstF5I GGATG 4 cut(s) 349, 1000, 1020, 1358
BstFNI CGCG 1 cut(s) 562
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 5 cut(s) 391, 524, 677, 1106, 1171
BstMAI GTCTC 3 cut(s) 9, 162, 182
BstMBI GATC 5 cut(s) 388, 521, 674, 1103, 1168
BstNI CCWGG 4 cut(s) 259, 614, 1005, 1288
BstSCI CCNGG 4 cut(s) 257, 612, 1003, 1286
BstSFI CTRYAG 5 cut(s) 396, 474, 669, 915, 1116
BstUI CGCG 1 cut(s) 562
BstV1I GCAGC 4 cut(s) 655, 833, 901, 923
BstV2I GAAGAC 2 cut(s) 93, 635
BstX2I RGATCY 3 cut(s) 388, 674, 1168
BstYI RGATCY 3 cut(s) 388, 674, 1168
BstZ17I GTATAC 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 1102
BsuI GTATCC 2 cut(s) 229, 664
BsuRI GGCC 4 cut(s) 611, 771, 864, 1286
BsuTUI ATCGAT 1 cut(s) 1102
BtsCI GGATG 4 cut(s) 349, 1000, 1020, 1358
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 3 cut(s) 60, 165, 524
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 682, 1176
CaiI CAGNNNCTG 1 cut(s) 677
CciI TCATGA 1 cut(s) 1248
CfoI GCGC 1 cut(s) 564
Cfr10I RCCGGY 1 cut(s) 869
Cfr13I GGNCC 2 cut(s) 610, 770
ClaI ATCGAT 1 cut(s) 1102
CseI GACGC 1 cut(s) 98
Csp6I GTAC 3 cut(s) 491, 978, 1240
CviAII CATG 5 cut(s) 695, 866, 1249, 1282, 1320
CviQI GTAC 3 cut(s) 491, 978, 1240
DdeI CTNAG 4 cut(s) 153, 181, 273, 661
DpnI GATC 5 cut(s) 390, 523, 676, 1105, 1170
DpnII GATC 5 cut(s) 388, 521, 674, 1103, 1168
DrdI GACNNNNNNGTC 1 cut(s) 324
DseDI GACNNNNNNGTC 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 1284
Eam1104I CTCTTC 2 cut(s) 546, 1062
EarI CTCTTC 2 cut(s) 546, 1062
EciI GGCGGA 1 cut(s) 1161
Eco57I CTGAAG 2 cut(s) 647, 1368
EcoO109I RGGNCCY 2 cut(s) 610, 770
EcoRII CCWGG 4 cut(s) 257, 612, 1003, 1286
EcoT22I ATGCAT 1 cut(s) 1360
FaeI CATG 5 cut(s) 698, 869, 1252, 1285, 1323
FaqI GGGAC 1 cut(s) 330
FatI CATG 5 cut(s) 694, 865, 1248, 1281, 1319
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 5 cut(s) 589, 669, 822, 912, 915
FokI GGATG 4 cut(s) 356, 987, 1007, 1345
Fsp4HI GCNGC 5 cut(s) 589, 669, 822, 912, 915
FspBI CTAG 6 cut(s) 18, 467, 581, 908, 929, 1406
GlaI GCGC 1 cut(s) 563
GluI GCNGC 5 cut(s) 589, 669, 822, 912, 915
GsaI CCCAGC 1 cut(s) 830
GsuI CTGGAG 2 cut(s) 1013, 1026
HaeIII GGCC 4 cut(s) 611, 771, 864, 1286
HapII CCGG 1 cut(s) 870
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 564
Hin1II CATG 5 cut(s) 698, 869, 1252, 1285, 1323
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 1212
HinfI GANTC 5 cut(s) 137, 190, 570, 953, 1271
HpaII CCGG 1 cut(s) 870
HphI GGTGA 1 cut(s) 535
Hpy166II GTNNAC 3 cut(s) 270, 543, 1127
Hpy188I TCNGA 7 cut(s) 9, 235, 550, 627, 1147, 1186, 1299
Hpy188III TCNNGA 9 cut(s) 77, 134, 386, 438, 992, 1040, 1166, 1249, 1367
Hpy8I GTNNAC 3 cut(s) 270, 543, 1127
HpyAV CCTTC 5 cut(s) 67, 368, 667, 782, 845
HpyCH4III ACNGT 4 cut(s) 169, 637, 973, 982
HpyCH4IV ACGT 3 cut(s) 945, 1129, 1238
HpyF3I CTNAG 4 cut(s) 153, 181, 273, 661
HpySE526I ACGT 3 cut(s) 945, 1129, 1238
Hsp92II CATG 5 cut(s) 698, 869, 1252, 1285, 1323
HspAI GCGC 1 cut(s) 562
Kzo9I GATC 5 cut(s) 388, 521, 674, 1103, 1168
LguI GCTCTTC 2 cut(s) 546, 1062
LmnI GCTCC 4 cut(s) 42, 59, 994, 1007
Lsp1109I GCAGC 4 cut(s) 655, 833, 901, 923
LweI GCATC 8 cut(s) 334, 412, 655, 691, 889, 1029, 1045, 1367
MaeI CTAG 6 cut(s) 18, 467, 581, 908, 929, 1406
MaeII ACGT 3 cut(s) 945, 1129, 1238
MaeIII GTNAC 5 cut(s) 253, 353, 808, 1322, 1331
MalI GATC 5 cut(s) 390, 523, 676, 1105, 1170
MboI GATC 5 cut(s) 388, 521, 674, 1103, 1168
MboII GAAGA 8 cut(s) 23, 98, 563, 640, 710, 1079, 1086, 1361
MfeI CAATTG 2 cut(s) 798, 1110
MflI RGATCY 3 cut(s) 388, 674, 1168
MlsI TGGCCA 1 cut(s) 1286
MluCI AATT 9 cut(s) 27, 752, 798, 920, 1044, 1086, 1095, 1110, 1197
MluNI TGGCCA 1 cut(s) 1286
MlyI GAGTC 1 cut(s) 184
Mox20I TGGCCA 1 cut(s) 1286
Mph1103I ATGCAT 1 cut(s) 1360
MscI TGGCCA 1 cut(s) 1286
MseI TTAA 4 cut(s) 593, 722, 1014, 1235
MslI CAYNNNNRTG 5 cut(s) 81, 420, 699, 870, 1423
Msp20I TGGCCA 1 cut(s) 1286
MspA1I CMGCKG 2 cut(s) 576, 914
MspI CCGG 1 cut(s) 870
MspR9I CCNGG 4 cut(s) 259, 614, 1005, 1288
MunI CAATTG 2 cut(s) 798, 1110
MvaI CCWGG 4 cut(s) 259, 614, 1005, 1288
MvnI CGCG 1 cut(s) 562
NdeII GATC 5 cut(s) 388, 521, 674, 1103, 1168
NlaIII CATG 5 cut(s) 698, 869, 1252, 1285, 1323
NlaIV GGNNCC 3 cut(s) 772, 1009, 1170
NmeAIII GCCGAG 1 cut(s) 1283
NsiI ATGCAT 1 cut(s) 1360
PagI TCATGA 1 cut(s) 1248
PaqCI CACCTGC 1 cut(s) 250
PciSI GCTCTTC 2 cut(s) 546, 1062
PfeI GAWTC 4 cut(s) 137, 570, 953, 1271
PflMI CCANNNNNTGG 1 cut(s) 437
PfoI TCCNGGA 1 cut(s) 1003
PkrI GCNGC 5 cut(s) 590, 670, 823, 913, 916
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 946
Psp6I CCWGG 4 cut(s) 257, 612, 1003, 1286
PspFI CCCAGC 1 cut(s) 826
PspGI CCWGG 4 cut(s) 257, 612, 1003, 1286
PspN4I GGNNCC 3 cut(s) 772, 1009, 1170
PspPI GGNCC 2 cut(s) 610, 770
PstI CTGCAG 3 cut(s) 400, 673, 919
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 3 cut(s) 388, 674, 1168
PvuII CAGCTG 2 cut(s) 576, 914
RsaI GTAC 3 cut(s) 492, 979, 1241
RsaNI GTAC 3 cut(s) 491, 978, 1240
RseI CAYNNNNRTG 5 cut(s) 81, 420, 699, 870, 1423
SapI GCTCTTC 2 cut(s) 546, 1062
SaqAI TTAA 4 cut(s) 593, 722, 1014, 1235
SatI GCNGC 5 cut(s) 589, 669, 822, 912, 915
Sau3AI GATC 5 cut(s) 388, 521, 674, 1103, 1168
Sau96I GGNCC 2 cut(s) 610, 770
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 4 cut(s) 259, 614, 1005, 1288
SfaNI GCATC 8 cut(s) 334, 412, 655, 691, 889, 1029, 1045, 1367
SfcI CTRYAG 5 cut(s) 396, 474, 669, 915, 1116
SmiMI CAYNNNNRTG 5 cut(s) 81, 420, 699, 870, 1423
Sse9I AATT 9 cut(s) 27, 752, 798, 920, 1044, 1086, 1095, 1110, 1197
SsiI CCGC 2 cut(s) 589, 1172
SspMI CTAG 6 cut(s) 18, 467, 581, 908, 929, 1406
StyD4I CCNGG 4 cut(s) 257, 612, 1003, 1286
TaaI ACNGT 4 cut(s) 169, 637, 973, 982
TaiI ACGT 3 cut(s) 948, 1132, 1241
TaqI TCGA 3 cut(s) 224, 1102, 1220
TasI AATT 9 cut(s) 27, 752, 798, 920, 1044, 1086, 1095, 1110, 1197
TatI WGTACW 1 cut(s) 490
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 4 cut(s) 137, 570, 953, 1271
Tru1I TTAA 4 cut(s) 593, 722, 1014, 1235
Tru9I TTAA 4 cut(s) 593, 722, 1014, 1235
TscAI CASTG 3 cut(s) 67, 172, 531
TseI GCWGC 4 cut(s) 668, 821, 911, 914
TspRI CASTG 3 cut(s) 67, 172, 531
Van91I CCANNNNNTGG 1 cut(s) 437
XapI RAATTY 1 cut(s) 1095
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 6 cut(s) 18, 467, 581, 908, 929, 1406
Zsp2I ATGCAT 1 cut(s) 1360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.