Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011917

Physical Location & Seq

Genomic Coordinates Reverse (-)

7424327 .. 7429780

Gene Structure 5454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG036700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCCTCTCAGATTATCTCTCTCATCACTCATCGTGCTCTGTTCCTTCACTGCAATCATAGCTCATAACAATGAAGACCCAACAATCAAAACAATGGAGGATTTCTCAGGCTACCCAATTCACGAGTCACACTCTCACCCTTCTTCACTATCAGTTGACGCTCAAAGTTTACAGAAACAGATAGATGAACTTTCGAGTTTTTCGGATACACCTGCCCCATCAGTGACCAGGGTCTTGTATACTGAGAAGGATGTGTTGGCACGTAGATTCATTAAAAACTTGATGGGACTCTCTGGTTTGTCCGTTAGAGAGGATGCTGTTGGTAACATATTTGGTCGATGGGAAGGCTCTAATCCAGAGCTTTCTGCCGTTGCAACAGGTTCTCACATTGATGCCATTCCATACTCTGGAAAGTATGATGGAGTTGTAGGTGTTTTGGGTGCTATAGAAGCGATCAATGTACTAATAAGGTCCGGGTTCAAACCTAAACGATCACTAGAAGTTATCATGTTCACCTCAGAAGAGCCTACACGCTTTGGAATAAGCTGTCTGGGAAGCCGCTTAATGGCAGGGAGTGAGACACTTGCTGAAGCTCTCAAGACCACAGTTGATGGTCAAAATATATCCTTCCTAGATGCATCACAATCTGCTGGCTACACTAAAGATCATAATGATATCTCTAGTGTGTTCTTGAAAAAAGGAAGCTACTCTGCTTTTGTGGAATTGCATATCGAGCAGGGCCCTCTTCTGGAGGAGGAAGGTATACCAATTGGCATTGTAACTGCCATTGCAGCCCCAGCAAGCATAAAAGTGGAGTTTCAGGGAAATGGAGGCCACGCTGGTGCTGTCCTGATGCCAAATAGAAATGATGCTGGACTAGCAGCTGCAGAATTAGCGCTAGCAGTTGAGAGACATGTATTAGAATCTGGATCTATTGATACTGTTGGTACAGTTGGTAAGTTGTGTTTCTTTTTACATAGCTGTGAGAATATGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0004848 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01120 map00230 map01100 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

332

Amino Acids

35.38

Weight (kDa)

5.14

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	109 - 195	1.3e-08	Peptidase family M28
Peptidase_M20	PF01546	126 - 296	1.8e-11	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43600
fragaria_vesca	FvH4_4g02810
malus_domestica	MD13G1207900.v1.1
prunus_persica	Prupe.1G031400_v2.0.a1
pyrus_communis	pycom13g18000
rosa_chinensis	RchiOBHm_Chr4g0390621 RchiOBHm_Chr4g0390681
rosa_laevigata	RLG00000009913
rosa_multiflora	Rmu_co8283127.1_g000001 Rmu_sc0000171.1_g000034 Rmu_sc0001380.1_g000018
rosa_roxburghii	Rroxscaffold_1G00049440 Rroxscaffold_5G00336590
rosa_rugosa	Rorug03G0331300 Rorug03G0331400
rosa_samantha	Rh4AG032900 Rh4BG026800 Rh4CG036700 Rh4DG029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	220
Acc36I	ACCTGC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccI	GTMKAC	2 cut(s)	239, 763
AciI	CCGC	1 cut(s)	559
AclWI	GGATC	1 cut(s)	937
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	2 cut(s)	462, 949
AfeI	AGCGCT	1 cut(s)	897
AfiI	CCNNNNNNNGG	3 cut(s)	407, 565, 748
AflIII	ACRYGT	1 cut(s)	913
AgsI	TTSAA	2 cut(s)	481, 694
AjnI	CCWGG	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AleI	CACNNNNGTG	1 cut(s)	840
AluBI	AGCT	7 cut(s)	62, 361, 546, 593, 705, 884, 981
AluI	AGCT	7 cut(s)	62, 361, 546, 593, 705, 884, 981
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	2 cut(s)	572, 904
AlwI	GGATC	1 cut(s)	937
Aor51HI	AGCGCT	1 cut(s)	897
AoxI	GGCC	2 cut(s)	739, 832
ApaI	GGGCCC	1 cut(s)	743
ApeKI	GCWGC	3 cut(s)	791, 881, 884
AspLEI	GCGC	1 cut(s)	898
AspS9I	GGNCC	3 cut(s)	471, 739, 740
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	128, 505
AsuNHI	GCTAGC	1 cut(s)	898
AvaII	GGWCC	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	743
BanII	GRGCYC	1 cut(s)	743
BauI	CACGAG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	803, 871, 893
BccI	CCATC	5 cut(s)	226, 277, 333, 413, 605
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	229
BciVI	GTATCC	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	572, 904
BfaI	CTAG	5 cut(s)	497, 632, 681, 878, 899
BfmI	CTRYAG	2 cut(s)	444, 885
BfoI	RGCGCY	1 cut(s)	899
BfuAI	ACCTGC	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	4 cut(s)	559, 792, 882, 885
BlsI	GCNGC	4 cut(s)	560, 793, 883, 886
Bme1390I	CCNGG	2 cut(s)	229, 475
Bme18I	GGWCC	1 cut(s)	471
BmgT120I	GGNCC	3 cut(s)	471, 739, 740
BmiI	GGNNCC	1 cut(s)	741
BmrFI	CCNGG	2 cut(s)	229, 475
BmsI	GCATC	6 cut(s)	304, 382, 625, 647, 843, 859
BmtI	GCTAGC	1 cut(s)	902
BoxI	GACNNNNGTC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	81
BplI	GAGNNNNNCTC	4 cut(s)	89, 121, 116, 148
BpmI	CTGGAG	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	475
BsaAI	YACGTR	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	3 cut(s)	407, 565, 748
Bse3DI	GCAATG	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	256, 319
BseLI	CCNNNNNNNGG	3 cut(s)	407, 565, 748
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	4 cut(s)	22, 120, 234, 531
BseRI	GAGGAG	1 cut(s)	767
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	3 cut(s)	803, 871, 893
BseYI	CCCAGC	1 cut(s)	796
BshFI	GGCC	2 cut(s)	741, 834
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	3 cut(s)	407, 565, 748
BsmAI	GTCTC	2 cut(s)	572, 904
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	2 cut(s)	741, 834
Bsp120I	GGGCCC	1 cut(s)	739
Bsp1286I	GDGCHC	2 cut(s)	39, 743
Bsp143I	GATC	4 cut(s)	453, 491, 664, 929
BspACI	CCGC	1 cut(s)	559
BspANI	GGCC	2 cut(s)	741, 834
BspCNI	CTCAG	4 cut(s)	21, 119, 235, 530
BspLI	GGNNCC	1 cut(s)	741
BspMAI	CTGCAG	1 cut(s)	889
BspMI	ACCTGC	1 cut(s)	220
BspOI	GCTAGC	1 cut(s)	902
BspPI	GGATC	1 cut(s)	937
BspQI	GCTCTTC	1 cut(s)	516
BsrDI	GCAATG	1 cut(s)	786
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	453, 491, 664, 929
BssNAI	GTATAC	2 cut(s)	240, 764
BssSI	CACGAG	1 cut(s)	122
Bst1107I	GTATAC	2 cut(s)	240, 764
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	3 cut(s)	607, 943, 952
Bst6I	CTCTTC	2 cut(s)	516, 750
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	652, 802, 900
BstDEI	CTNAG	4 cut(s)	8, 106, 243, 517
BstF5I	GGATG	2 cut(s)	256, 319
BstH2I	RGCGCY	1 cut(s)	899
BstHHI	GCGC	1 cut(s)	898
BstKTI	GATC	4 cut(s)	456, 494, 667, 932
BstMAI	GTCTC	2 cut(s)	572, 904
BstMBI	GATC	4 cut(s)	453, 491, 664, 929
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 449, 733, 791, 797, 878, 893
BstNI	CCWGG	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	917
BstPAI	GACNNNNGTC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	227, 473
BstSFI	CTRYAG	2 cut(s)	444, 885
BstSLI	GKGCMC	1 cut(s)	743
BstV1I	GCAGC	3 cut(s)	803, 871, 893
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	929
BstZ17I	GTATAC	2 cut(s)	240, 764
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	741, 834
BtsCI	GGATG	2 cut(s)	256, 319
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 228
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	652, 802, 900
CfoI	GCGC	1 cut(s)	898
Cfr13I	GGNCC	3 cut(s)	471, 739, 740
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	461, 948
CviAII	CATG	2 cut(s)	508, 914
CviQI	GTAC	2 cut(s)	461, 948
DdeI	CTNAG	4 cut(s)	8, 106, 243, 517
DpnI	GATC	4 cut(s)	455, 493, 666, 931
DpnII	GATC	4 cut(s)	453, 491, 664, 929
Eam1104I	CTCTTC	2 cut(s)	516, 750
EarI	CTCTTC	2 cut(s)	516, 750
Eco24I	GRGCYC	1 cut(s)	743
Eco32I	GATATC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	471
Eco47III	AGCGCT	1 cut(s)	897
Eco57I	CTGAAG	1 cut(s)	609
EcoO109I	RGGNCCY	2 cut(s)	739, 740
EcoRII	CCWGG	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	676
EcoT22I	ATGCAT	1 cut(s)	640
EcoT38I	GRGCYC	1 cut(s)	743
FaeI	CATG	2 cut(s)	511, 917
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	2 cut(s)	507, 913
FblI	GTMKAC	2 cut(s)	239, 763
Fnu4HI	GCNGC	4 cut(s)	559, 792, 882, 885
FokI	GGATG	2 cut(s)	263, 326
FriOI	GRGCYC	1 cut(s)	743
Fsp4HI	GCNGC	4 cut(s)	559, 792, 882, 885
FspBI	CTAG	5 cut(s)	497, 632, 681, 878, 899
GlaI	GCGC	1 cut(s)	897
GluI	GCNGC	4 cut(s)	559, 792, 882, 885
GsaI	CCCAGC	1 cut(s)	800
GsuI	CTGGAG	1 cut(s)	770
HaeII	RGCGCY	1 cut(s)	899
HaeIII	GGCC	2 cut(s)	741, 834
HapII	CCGG	1 cut(s)	474
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	898
Hin1II	CATG	2 cut(s)	511, 917
Hin6I	GCGC	1 cut(s)	896
HinP1I	GCGC	1 cut(s)	896
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	4 cut(s)	125, 267, 288, 923
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	2 cut(s)	128, 505
Hpy166II	GTNNAC	5 cut(s)	157, 170, 240, 513, 764
Hpy188I	TCNGA	3 cut(s)	11, 205, 520
Hpy188III	TCNNGA	8 cut(s)	122, 356, 408, 598, 691, 749, 850, 927
Hpy8I	GTNNAC	5 cut(s)	157, 170, 240, 513, 764
HpyAV	CCTTC	6 cut(s)	55, 150, 241, 338, 637, 752
HpyCH4III	ACNGT	3 cut(s)	607, 943, 952
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	6 cut(s)	53, 374, 638, 727, 791, 887
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 449, 733, 791, 797, 878, 893
HpyF3I	CTNAG	4 cut(s)	8, 106, 243, 517
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	511, 917
HspAI	GCGC	1 cut(s)	896
Kzo9I	GATC	4 cut(s)	453, 491, 664, 929
LguI	GCTCTTC	1 cut(s)	516
Lsp1109I	GCAGC	3 cut(s)	803, 871, 893
LweI	GCATC	6 cut(s)	304, 382, 625, 647, 843, 859
MaeI	CTAG	5 cut(s)	497, 632, 681, 878, 899
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	4 cut(s)	126, 223, 323, 778
MalI	GATC	4 cut(s)	455, 493, 666, 931
MboI	GATC	4 cut(s)	453, 491, 664, 929
MboII	GAAGA	4 cut(s)	86, 135, 533, 737
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	1 cut(s)	929
MhlI	GDGCHC	2 cut(s)	39, 743
MluCI	AATT	4 cut(s)	117, 722, 768, 890
MlyI	GAGTC	2 cut(s)	134, 282
MnlI	CCTC	8 cut(s)	15, 91, 304, 526, 745, 748, 753, 824
Mph1103I	ATGCAT	1 cut(s)	640
MseI	TTAA	2 cut(s)	273, 563
MslI	CAYNNNNRTG	5 cut(s)	69, 390, 809, 840, 981
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	229, 475
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	7 cut(s)	59, 449, 733, 791, 797, 878, 893
NciI	CCSGG	1 cut(s)	475
NdeII	GATC	4 cut(s)	453, 491, 664, 929
NheI	GCTAGC	1 cut(s)	898
NlaIII	CATG	2 cut(s)	511, 917
NlaIV	GGNNCC	1 cut(s)	741
NmuCI	GTSAC	2 cut(s)	126, 223
NsiI	ATGCAT	1 cut(s)	640
NspI	RCATGY	1 cut(s)	917
OliI	CACNNNNGTG	1 cut(s)	840
PaqCI	CACCTGC	1 cut(s)	220
PciI	ACATGT	1 cut(s)	913
PciSI	GCTCTTC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	267, 923
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	4 cut(s)	560, 793, 883, 886
PleI	GAGTC	2 cut(s)	133, 282
PpsI	GAGTC	2 cut(s)	133, 282
Ppu21I	YACGTR	1 cut(s)	263
PscI	ACATGT	1 cut(s)	913
PshAI	GACNNNNGTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	796
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	741
PspOMI	GGGCCC	1 cut(s)	739
PspPI	GGNCC	3 cut(s)	471, 739, 740
PstI	CTGCAG	1 cut(s)	889
PsuI	RGATCY	1 cut(s)	929
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	2 cut(s)	462, 949
RsaNI	GTAC	2 cut(s)	461, 948
RseI	CAYNNNNRTG	5 cut(s)	69, 390, 809, 840, 981
SapI	GCTCTTC	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	273, 563
SatI	GCNGC	4 cut(s)	559, 792, 882, 885
Sau3AI	GATC	4 cut(s)	453, 491, 664, 929
Sau96I	GGNCC	3 cut(s)	471, 739, 740
SchI	GAGTC	2 cut(s)	134, 282
ScrFI	CCNGG	2 cut(s)	229, 475
SduI	GDGCHC	2 cut(s)	39, 743
SfaNI	GCATC	6 cut(s)	304, 382, 625, 647, 843, 859
SfcI	CTRYAG	2 cut(s)	444, 885
SinI	GGWCC	1 cut(s)	471
SmiMI	CAYNNNNRTG	5 cut(s)	69, 390, 809, 840, 981
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	4 cut(s)	117, 722, 768, 890
SsiI	CCGC	1 cut(s)	559
SspMI	CTAG	5 cut(s)	497, 632, 681, 878, 899
StyD4I	CCNGG	2 cut(s)	227, 473
TaaI	ACNGT	3 cut(s)	607, 943, 952
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	3 cut(s)	194, 337, 732
TasI	AATT	4 cut(s)	117, 722, 768, 890
TatI	WGTACW	1 cut(s)	460
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	2 cut(s)	267, 923
Tru1I	TTAA	2 cut(s)	273, 563
Tru9I	TTAA	2 cut(s)	273, 563
TscAI	CASTG	2 cut(s)	55, 228
TseFI	GTSAC	2 cut(s)	126, 223
TseI	GCWGC	3 cut(s)	791, 881, 884
Tsp45I	GTSAC	2 cut(s)	126, 223
TspDTI	ATGAA	3 cut(s)	87, 201, 259
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	2 cut(s)	55, 228
Van91I	CCANNNNNTGG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	471
XceI	RCATGY	1 cut(s)	917
XmiI	GTMKAC	2 cut(s)	239, 763
XspI	CTAG	5 cut(s)	497, 632, 681, 878, 899
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.