Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011917

Physical Location & Seq

Genomic Coordinates Reverse (-)

7065802 .. 7071073

Gene Structure 5272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG032900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCCTCTCAGATTCTCTCTCTCATCACTCATCGTGCTCTGTTCCTTCACTGCAATCTTAGCCCACAACAATGAAGACCCAACAATCAAAACAATGGAGGACTTCTCAGGCTACCCAATTCACGAGTCACACTCTCATCTTTCTTCACTATCAGTTGACGCTCAAAGTTTACAGAAACAGATTGATGAACTTTCGAGTTTTTCGGATACACCTGCCCCATCAGTGACCAGGGTCTTGTATACTGAGAAGGATGTGTTGGCACGTAGTTGGGTTGACTATGCTCTTGGTCTTGCTTTCCTGTATGCAGGGAAGGCTCTAATCCAGAGCTTTCTGCCGTTGCAACAGGTTCTCACATTGATGCCATTCCATACTCTGGAAAGTATACCAATTGGCATTGTAACTGCCATTGCAGCCCCGGCAAGCATAAAAGTGGAGTTTCAGGGAAATGGAGGCCATGCGGGTGCTGTCCTGATGCCAAATAGAAATGATGCTGGACTAGCAGCTGCAGAATTAGCTCTAGCAGTTGAGAGACATGTATTAGAATCTGGATCTATTGATACTGTTGGTACAGTTGGTATTCTGGAGCTACACCCCGGAGCTATCAACAGCATCCCAAGCAAATCATATCTGGAAATCGACACAAGAGACATTGATGAAGAGCGAAGAAACACCGTAATTGAGAAAATCCATCAATCTGCAATTTCTATAGCCAGAAAGCGGCGAGTCACTCTATCCGAATTCAAAATCGTAAACCAGGATCCACCTGCACTTTCTGAGAAATCAATACTTGACGCAATGGTAGCTTCATCAAAAGAGCTCAACTTAACCCACAAGTTGATGATTAGCCGAGCTTACCACGATTCATTGTTCATGGCCAGAATATCCCCAATGGGCATGATATTCATTCCATGTTACAAAGGTTACAGCCATAAACCTGAAGAGTATTCCTCTACTGAGGACATATCGAATGGGGTCAAGGTATTAGCCCTGACCCTTGCAAAATTGTCATTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0004848 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01120 map00230 map01100 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

338

Amino Acids

36.94

Weight (kDa)

5.84

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	173 - 333	8e-11	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43600
fragaria_vesca	FvH4_4g02810
malus_domestica	MD13G1207900.v1.1
prunus_persica	Prupe.1G031400_v2.0.a1
pyrus_communis	pycom13g18000
rosa_chinensis	RchiOBHm_Chr4g0390621 RchiOBHm_Chr4g0390681
rosa_laevigata	RLG00000009913
rosa_multiflora	Rmu_co8283127.1_g000001 Rmu_sc0000171.1_g000034 Rmu_sc0001380.1_g000018
rosa_roxburghii	Rroxscaffold_1G00049440 Rroxscaffold_5G00336590
rosa_rugosa	Rorug03G0331300 Rorug03G0331400
rosa_samantha	Rh4AG032900 Rh4BG026800 Rh4CG036700 Rh4DG029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	220, 772
Acc36I	ACCTGC	2 cut(s)	220, 772
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	2 cut(s)	239, 382
AciI	CCGC	2 cut(s)	458, 718
AclWI	GGATC	3 cut(s)	556, 752, 765
AcoI	YGGCCR	1 cut(s)	873
AcsI	RAATTY	1 cut(s)	737
AcuI	CTGAAG	1 cut(s)	957
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	2 cut(s)	373, 717
AflIII	ACRYGT	1 cut(s)	532
AgsI	TTSAA	1 cut(s)	742
AjnI	CCWGG	2 cut(s)	227, 753
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	8 cut(s)	327, 503, 515, 586, 599, 803, 817, 851
AluI	AGCT	8 cut(s)	327, 503, 515, 586, 599, 803, 817, 851
Alw21I	GWGCWC	2 cut(s)	39, 819
Alw26I	GTCTC	2 cut(s)	523, 639
AlwI	GGATC	3 cut(s)	556, 752, 765
AoxI	GGCC	2 cut(s)	451, 873
ApeKI	GCWGC	3 cut(s)	410, 500, 503
ApoI	RAATTY	1 cut(s)	737
AsuC2I	CCSGG	2 cut(s)	416, 594
BalI	TGGCCA	1 cut(s)	875
BamHI	GGATCC	1 cut(s)	757
BanII	GRGCYC	1 cut(s)	819
BauI	CACGAG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	39, 819
BbvI	GCAGC	3 cut(s)	422, 490, 512
BccI	CCATC	2 cut(s)	226, 696
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	2 cut(s)	229, 755
BciVI	GTATCC	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	416, 594
BcoDI	GTCTC	2 cut(s)	523, 639
BfaI	CTAG	2 cut(s)	497, 518
BfmI	CTRYAG	2 cut(s)	504, 705
BfuAI	ACCTGC	2 cut(s)	220, 772
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	4 cut(s)	411, 501, 504, 719
BlsI	GCNGC	4 cut(s)	412, 502, 505, 720
Bme1390I	CCNGG	4 cut(s)	229, 416, 594, 755
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	4 cut(s)	229, 416, 594, 755
BmsI	GCATC	4 cut(s)	348, 462, 478, 618
BoxI	GACNNNNGTC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	81
BplI	GAGNNNNNCTC	6 cut(s)	89, 121, 116, 148, 932, 964
BpmI	CTGGAG	1 cut(s)	602
BpuMI	CCSGG	2 cut(s)	416, 594
BsaAI	YACGTR	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	228, 414, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 717
Bse3DI	GCAATG	3 cut(s)	405, 801, 1007
BseBI	CCWGG	2 cut(s)	229, 755
BseDI	CCNNGG	3 cut(s)	228, 414, 592
BseGI	GGATG	2 cut(s)	256, 609
BseLI	CCNNNNNNNGG	2 cut(s)	373, 717
BseMI	GCAATG	3 cut(s)	405, 801, 1007
BseMII	CTCAG	5 cut(s)	22, 120, 234, 765, 945
BseXI	GCAGC	3 cut(s)	422, 490, 512
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	2 cut(s)	453, 875
BsiHKAI	GWGCWC	2 cut(s)	39, 819
BsiSI	CCGG	2 cut(s)	416, 594
BslI	CCNNNNNNNGG	2 cut(s)	373, 717
BsmAI	GTCTC	2 cut(s)	523, 639
BsnI	GGCC	2 cut(s)	453, 875
Bsp1286I	GDGCHC	2 cut(s)	39, 819
Bsp143I	GATC	2 cut(s)	548, 757
BspACI	CCGC	2 cut(s)	458, 718
BspANI	GGCC	2 cut(s)	453, 875
BspCNI	CTCAG	5 cut(s)	21, 119, 235, 766, 946
BspLI	GGNNCC	1 cut(s)	759
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	2 cut(s)	220, 772
BspPI	GGATC	3 cut(s)	556, 752, 765
BspQI	GCTCTTC	1 cut(s)	651
BsrDI	GCAATG	3 cut(s)	405, 801, 1007
BssECI	CCNNGG	3 cut(s)	228, 414, 592
BssMI	GATC	2 cut(s)	548, 757
BssNAI	GTATAC	2 cut(s)	240, 383
BssSI	CACGAG	1 cut(s)	122
Bst1107I	GTATAC	2 cut(s)	240, 383
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	2 cut(s)	229, 755
Bst4CI	ACNGT	3 cut(s)	562, 571, 673
Bst6I	CTCTTC	2 cut(s)	651, 933
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	6 cut(s)	8, 58, 106, 243, 774, 954
BstF5I	GGATG	2 cut(s)	256, 609
BstKTI	GATC	2 cut(s)	551, 760
BstMAI	GTCTC	2 cut(s)	523, 639
BstMBI	GATC	2 cut(s)	548, 757
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 311, 410, 416, 497, 512, 615, 800
BstNI	CCWGG	2 cut(s)	229, 755
BstNSI	RCATGY	1 cut(s)	536
BstPAI	GACNNNNGTC	1 cut(s)	230
BstSCI	CCNGG	4 cut(s)	227, 414, 592, 753
BstSFI	CTRYAG	2 cut(s)	504, 705
BstV1I	GCAGC	3 cut(s)	422, 490, 512
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	548, 757
BstYI	RGATCY	2 cut(s)	548, 757
BstZ17I	GTATAC	2 cut(s)	240, 383
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	453, 875
BtsCI	GGATG	2 cut(s)	256, 609
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 228
BveI	ACCTGC	2 cut(s)	220, 772
Cac8I	GCNNGC	1 cut(s)	421
CseI	GACGC	2 cut(s)	167, 800
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	5 cut(s)	455, 533, 871, 895, 909
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	6 cut(s)	8, 58, 106, 243, 774, 954
DpnI	GATC	2 cut(s)	550, 759
DpnII	GATC	2 cut(s)	548, 757
EaeI	YGGCCR	1 cut(s)	873
Eam1104I	CTCTTC	2 cut(s)	651, 933
EarI	CTCTTC	2 cut(s)	651, 933
Ecl136II	GAGCTC	1 cut(s)	817
Eco24I	GRGCYC	1 cut(s)	819
Eco53kI	GAGCTC	1 cut(s)	817
Eco57I	CTGAAG	1 cut(s)	957
EcoICRI	GAGCTC	1 cut(s)	817
EcoRI	GAATTC	1 cut(s)	737
EcoRII	CCWGG	2 cut(s)	227, 753
EcoT38I	GRGCYC	1 cut(s)	819
FaeI	CATG	5 cut(s)	458, 536, 874, 898, 912
FatI	CATG	5 cut(s)	454, 532, 870, 894, 908
FauI	CCCGC	1 cut(s)	451
FblI	GTMKAC	2 cut(s)	239, 382
Fnu4HI	GCNGC	4 cut(s)	411, 501, 504, 719
FokI	GGATG	2 cut(s)	263, 596
FriOI	GRGCYC	1 cut(s)	819
Fsp4HI	GCNGC	4 cut(s)	411, 501, 504, 719
FspBI	CTAG	2 cut(s)	497, 518
GluI	GCNGC	4 cut(s)	411, 501, 504, 719
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	2 cut(s)	453, 875
HapII	CCGG	2 cut(s)	416, 594
HgaI	GACGC	2 cut(s)	167, 800
Hin1II	CATG	5 cut(s)	458, 536, 874, 898, 912
HincII	GTYRAC	2 cut(s)	157, 274
HindII	GTYRAC	2 cut(s)	157, 274
HinfI	GANTC	5 cut(s)	12, 125, 542, 723, 860
HpaII	CCGG	2 cut(s)	416, 594
Hpy166II	GTNNAC	6 cut(s)	157, 170, 240, 274, 383, 751
Hpy188I	TCNGA	4 cut(s)	11, 205, 736, 775
Hpy188III	TCNNGA	7 cut(s)	122, 322, 374, 469, 546, 581, 629
Hpy8I	GTNNAC	6 cut(s)	157, 170, 240, 274, 383, 751
HpyAV	CCTTC	3 cut(s)	55, 241, 304
HpyCH4III	ACNGT	3 cut(s)	562, 571, 673
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	9 cut(s)	53, 305, 340, 410, 506, 698, 767, 998, 1012
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 311, 410, 416, 497, 512, 615, 800
HpyF3I	CTNAG	6 cut(s)	8, 58, 106, 243, 774, 954
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	5 cut(s)	458, 536, 874, 898, 912
Kzo9I	GATC	2 cut(s)	548, 757
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	2 cut(s)	583, 596
Lsp1109I	GCAGC	3 cut(s)	422, 490, 512
LweI	GCATC	4 cut(s)	348, 462, 478, 618
MaeI	CTAG	2 cut(s)	497, 518
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	6 cut(s)	126, 223, 397, 724, 911, 920
MalI	GATC	2 cut(s)	550, 759
MboI	GATC	2 cut(s)	548, 757
MboII	GAAGA	5 cut(s)	86, 135, 668, 675, 950
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	2 cut(s)	548, 757
MhlI	GDGCHC	2 cut(s)	39, 819
MlsI	TGGCCA	1 cut(s)	875
MluCI	AATT	7 cut(s)	117, 387, 509, 675, 699, 737, 1001
MluNI	TGGCCA	1 cut(s)	875
MlyI	GAGTC	2 cut(s)	134, 732
MnlI	CCTC	5 cut(s)	15, 91, 443, 949, 958
Mox20I	TGGCCA	1 cut(s)	875
MscI	TGGCCA	1 cut(s)	875
MseI	TTAA	1 cut(s)	824
MslI	CAYNNNNRTG	5 cut(s)	69, 356, 428, 459, 1012
Msp20I	TGGCCA	1 cut(s)	875
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	2 cut(s)	416, 594
MspR9I	CCNGG	4 cut(s)	229, 416, 594, 755
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	2 cut(s)	229, 755
MwoI	GCNNNNNNNGC	8 cut(s)	59, 311, 410, 416, 497, 512, 615, 800
NciI	CCSGG	2 cut(s)	416, 594
NdeII	GATC	2 cut(s)	548, 757
NlaIII	CATG	5 cut(s)	458, 536, 874, 898, 912
NlaIV	GGNNCC	1 cut(s)	759
NmeAIII	GCCGAG	1 cut(s)	872
NmuCI	GTSAC	3 cut(s)	126, 223, 724
NspI	RCATGY	1 cut(s)	536
PaqCI	CACCTGC	2 cut(s)	220, 772
PciI	ACATGT	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	651
PfeI	GAWTC	3 cut(s)	12, 542, 860
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	4 cut(s)	412, 502, 505, 720
PleI	GAGTC	2 cut(s)	133, 731
PpsI	GAGTC	2 cut(s)	133, 731
Ppu21I	YACGTR	1 cut(s)	263
PscI	ACATGT	1 cut(s)	532
PshAI	GACNNNNGTC	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	819
Psp6I	CCWGG	2 cut(s)	227, 753
PspGI	CCWGG	2 cut(s)	227, 753
PspN4I	GGNNCC	1 cut(s)	759
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	548, 757
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	5 cut(s)	69, 356, 428, 459, 1012
SacI	GAGCTC	1 cut(s)	819
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	1 cut(s)	824
SatI	GCNGC	4 cut(s)	411, 501, 504, 719
Sau3AI	GATC	2 cut(s)	548, 757
SchI	GAGTC	2 cut(s)	134, 732
ScrFI	CCNGG	4 cut(s)	229, 416, 594, 755
SduI	GDGCHC	2 cut(s)	39, 819
SfaNI	GCATC	4 cut(s)	348, 462, 478, 618
SfcI	CTRYAG	2 cut(s)	504, 705
SmiMI	CAYNNNNRTG	5 cut(s)	69, 356, 428, 459, 1012
Sse9I	AATT	7 cut(s)	117, 387, 509, 675, 699, 737, 1001
SsiI	CCGC	2 cut(s)	458, 718
SspMI	CTAG	2 cut(s)	497, 518
SstI	GAGCTC	1 cut(s)	819
StyD4I	CCNGG	4 cut(s)	227, 414, 592, 753
TaaI	ACNGT	3 cut(s)	562, 571, 673
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	3 cut(s)	194, 636, 965
TasI	AATT	7 cut(s)	117, 387, 509, 675, 699, 737, 1001
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	3 cut(s)	12, 542, 860
Tru1I	TTAA	1 cut(s)	824
Tru9I	TTAA	1 cut(s)	824
TscAI	CASTG	2 cut(s)	55, 228
TseFI	GTSAC	3 cut(s)	126, 223, 724
TseI	GCWGC	3 cut(s)	410, 500, 503
Tsp45I	GTSAC	3 cut(s)	126, 223, 724
TspDTI	ATGAA	7 cut(s)	87, 201, 669, 795, 852, 859, 892
TspRI	CASTG	2 cut(s)	55, 228
Van91I	CCANNNNNTGG	1 cut(s)	373
XapI	RAATTY	1 cut(s)	737
XceI	RCATGY	1 cut(s)	536
XmiI	GTMKAC	2 cut(s)	239, 382
XspI	CTAG	2 cut(s)	497, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.