Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011917

Physical Location & Seq

Genomic Coordinates Reverse (-)

38423389 .. 38424836

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0331300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGATAGTGATCTTGAGATGGCTAGGCGTATTGTTTATGTCCACCAGAATAAAGAATCTCCGGCTCTTGGCTTCACTCCACTTGAACCATCTGTTCTTCGCGCATATATTTCTGCTGCAAGAAGATTGTCTCCTTCTGTCCCACCGGAACTTGAGGAGTACATTGCAAGTGCCTACTCTGCAATTCGGCAAGAAGAAGCTAAATCTAATGCTCCCCACTCCTATACAACTGTCAGAACTCTGCTCAGCATTCTTCGCATATCAGCTGCACTAGCAAGACTCCGATTCTGTGAAACAGTTGCTCAGAGTGACGTGGATGAGTCGCTCAGGCTAATGCAGATGTCCAAGTTCTCTTTATACTCAGATGATCGTCAGAGATCTGGACTTGATGCTATCTCTGATATCTATTCAATTCTGCGAGATGAAGCTGCCAGGACAAATAAGCTAGATGTCAGCTATGCACATGCACTGAATTGGATTTCTAGAAAGGGTTACACTGAAGCCCAACTGAAAGAATGTTTGGAGGAATATGCAGCCCTGAATGTGTGGCAGATCAATCCGCAAACTTTTGACATCAGATTTATCGACGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0004848 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01120 map00230 map01100 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

197

Amino Acids

22.4

Weight (kDa)

5.47

Isoelectric Point (pI)

58.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_lid	PF17855	32 - 115	5.1e-22	MCM AAA-lid domain
WHD_MCM7	PF24901	160 - 195	1.2e-07	DNA replication licensing factor MCM7, winged helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43600
fragaria_vesca	FvH4_4g02810
malus_domestica	MD13G1207900.v1.1
prunus_persica	Prupe.1G031400_v2.0.a1
pyrus_communis	pycom13g18000
rosa_chinensis	RchiOBHm_Chr4g0390621 RchiOBHm_Chr4g0390681
rosa_laevigata	RLG00000009913
rosa_multiflora	Rmu_co8283127.1_g000001 Rmu_sc0000171.1_g000034 Rmu_sc0001380.1_g000018
rosa_roxburghii	Rroxscaffold_1G00049440 Rroxscaffold_5G00336590
rosa_rugosa	Rorug03G0331300 Rorug03G0331400
rosa_samantha	Rh4AG032900 Rh4BG026800 Rh4CG036700 Rh4DG029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	102
AciI	CCGC	1 cut(s)	560
AcuI	CTGAAG	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	588
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	86, 411
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	431
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	5 cut(s)	200, 266, 428, 445, 456
AluI	AGCT	5 cut(s)	200, 266, 428, 445, 456
Alw26I	GTCTC	1 cut(s)	135
ApeKI	GCWGC	4 cut(s)	116, 266, 428, 533
AspLEI	GCGC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	103, 253, 415, 545
BccI	CCATC	2 cut(s)	13, 97
BciT130I	CCWGG	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	4 cut(s)	24, 272, 446, 483
BglII	AGATCT	1 cut(s)	377
BisI	GCNGC	4 cut(s)	117, 267, 429, 534
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	4 cut(s)	118, 268, 430, 535
Bme1390I	CCNGG	1 cut(s)	433
BmgBI	CACGTC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	433
BmsI	GCATC	1 cut(s)	379
Bpu10I	CCTNAGC	1 cut(s)	326
Bpu1102I	GCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	35, 173
BsaBI	GATNNNNATC	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	588
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	162
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	433
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	4 cut(s)	259, 317, 340, 375
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	4 cut(s)	103, 253, 415, 545
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	62, 146
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	10, 367, 377, 552
Bsp1720I	GCTNAGC	1 cut(s)	245
BspACI	CCGC	1 cut(s)	560
BspCNI	CTCAG	4 cut(s)	258, 316, 339, 374
BspFNI	CGCG	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	162
BssMI	GATC	4 cut(s)	10, 367, 377, 552
BssNI	GRCGYC	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	232, 298
BstACI	GRCGYC	1 cut(s)	588
BstDEI	CTNAG	4 cut(s)	245, 303, 326, 361
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	4 cut(s)	13, 370, 380, 555
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	4 cut(s)	10, 367, 377, 552
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 255, 272
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	431
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	4 cut(s)	103, 253, 415, 545
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	467, 495
CfoI	GCGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	1 cut(s)	464
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	4 cut(s)	245, 303, 326, 361
DpnI	GATC	4 cut(s)	12, 369, 379, 554
DpnII	GATC	4 cut(s)	10, 367, 377, 552
Eco32I	GATATC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	403
FaeI	CATG	1 cut(s)	467
FaiI	YATR	9 cut(s)	39, 106, 108, 225, 260, 358, 459, 465, 531
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	463
Fnu4HI	GCNGC	4 cut(s)	117, 267, 429, 534
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	4 cut(s)	117, 267, 429, 534
FspBI	CTAG	4 cut(s)	24, 272, 446, 483
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	4 cut(s)	117, 267, 429, 534
HapII	CCGG	2 cut(s)	62, 146
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	1 cut(s)	467
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	4 cut(s)	56, 279, 285, 320
HpaII	CCGG	2 cut(s)	62, 146
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	7 cut(s)	236, 284, 306, 364, 375, 400, 578
Hpy188III	TCNNGA	3 cut(s)	14, 381, 483
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	2 cut(s)	232, 298
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	8 cut(s)	119, 167, 182, 269, 337, 461, 467, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 255, 272
HpyF3I	CTNAG	4 cut(s)	245, 303, 326, 361
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	1 cut(s)	467
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	10, 367, 377, 552
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	8 cut(s)	59, 75, 159, 313, 366, 418, 445, 551
Lsp1109I	GCAGC	4 cut(s)	103, 253, 415, 545
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	4 cut(s)	24, 272, 446, 483
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	308, 491
MalI	GATC	4 cut(s)	12, 369, 379, 554
MboI	GATC	4 cut(s)	10, 367, 377, 552
MboII	GAAGA	4 cut(s)	89, 135, 206, 245
MflI	RGATCY	1 cut(s)	377
MluCI	AATT	3 cut(s)	183, 411, 472
MlyI	GAGTC	2 cut(s)	273, 329
MnlI	CCTC	2 cut(s)	148, 517
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	2 cut(s)	62, 146
MspR9I	CCNGG	1 cut(s)	433
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	433
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	179, 255, 272
NdeII	GATC	4 cut(s)	10, 367, 377, 552
NlaIII	CATG	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	467
PctI	GAATGC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	56, 285
PkrI	GCNGC	4 cut(s)	118, 268, 430, 535
PleI	GAGTC	2 cut(s)	273, 328
PpsI	GAGTC	2 cut(s)	273, 328
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SatI	GCNGC	4 cut(s)	117, 267, 429, 534
Sau3AI	GATC	4 cut(s)	10, 367, 377, 552
SchI	GAGTC	2 cut(s)	273, 329
ScrFI	CCNGG	1 cut(s)	433
SetI	ASST	6 cut(s)	202, 268, 315, 430, 447, 458
SfaNI	GCATC	1 cut(s)	379
SmlI	CTYRAG	2 cut(s)	14, 152
SmoI	CTYRAG	2 cut(s)	14, 152
Sse9I	AATT	3 cut(s)	183, 411, 472
SsiI	CCGC	1 cut(s)	560
SspMI	CTAG	4 cut(s)	24, 272, 446, 483
StyD4I	CCNGG	1 cut(s)	431
TaaI	ACNGT	2 cut(s)	232, 298
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	585
TasI	AATT	3 cut(s)	183, 411, 472
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	56, 285
TscAI	CASTG	2 cut(s)	474, 502
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	4 cut(s)	116, 266, 428, 533
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	2 cut(s)	474, 502
XbaI	TCTAGA	1 cut(s)	482
XceI	RCATGY	1 cut(s)	467
XspI	CTAG	4 cut(s)	24, 272, 446, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.