Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011917

Physical Location & Seq

Genomic Coordinates Reverse (-)

13999150 .. 14001195

Gene Structure 2046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCTCTGAATATCCCTCGCTCTGCAATTCTTCTGCTCCTCCTCCTCCTCTGCTCCTTCACTGCAATCTCAGCTCACGAAAATGAAGACCCAACAATCAAAACAATGGAGGATTTCTCTGGCTACCCATTTCACGAATCACACTCTACCTCTCAGTCTCACACTGTTTCTTTACTCTCAGTGGACACTCAAAGTTTGCAGAAACAGATCGATGAACTTTCGACTTATTCGGATACACCTGCCCCATCAGTTACCAGGGTCTTGTATACTGAGAAGGATGTATTGGCGCGTAGGTTCATCAAAAACTTGATGCGACTTTCTGGTCTATCTGTTAGAGAGGATGCTGTTGGTAACATATTTGGTCGGTGGGAAGGCTATAATCCAGATCTTTCTGCAGTTGCGACAGGTTCTCACATTGATGCCATTCCATACTCCGGAAAGTATGATGGTGTTGTGGGTGTTCTAGGTGCTATAGAAGCCATCAATGTACTGAAAAGGTCTGGCTTCAAACCCAAAAGATCACTGGAAGTTATCTTGTTCACCTCAGAAGAGCCTACGCGTTTTGGAATCAGCTGTCTAGGAAGCCGCTTAATGGCAGGGATTGAGGCCCTGGCTAATGCTCTGAAGACAACAGTTGATGGTCAAAATGTATCCTTCTTAGATGCTGCAGGATCGATGCTGGCTACACTAAACATGAAGATGATTTATCGAGTGTGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0004848 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01120 map00230 map01100 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

241

Amino Acids

26.15

Weight (kDa)

5.96

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43600
fragaria_vesca	FvH4_4g02810
malus_domestica	MD13G1207900.v1.1
prunus_persica	Prupe.1G031400_v2.0.a1
pyrus_communis	pycom13g18000
rosa_chinensis	RchiOBHm_Chr4g0390621 RchiOBHm_Chr4g0390681
rosa_laevigata	RLG00000009913
rosa_multiflora	Rmu_co8283127.1_g000001 Rmu_sc0000171.1_g000034 Rmu_sc0001380.1_g000018
rosa_roxburghii	Rroxscaffold_1G00049440 Rroxscaffold_5G00336590
rosa_rugosa	Rorug03G0331300 Rorug03G0331400
rosa_samantha	Rh4AG032900 Rh4BG026800 Rh4CG036700 Rh4DG029900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
AasI	GACNNNNNNGTC	1 cut(s)	321
Acc36I	ACCTGC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	266
AccII	CGCG	2 cut(s)	289, 559
AccIII	TCCGGA	1 cut(s)	434
AciI	CCGC	1 cut(s)	586
AclWI	GGATC	1 cut(s)	679
AcuI	CTGAAG	1 cut(s)	644
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	2 cut(s)	434, 592
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	1 cut(s)	508
AjnI	CCWGG	2 cut(s)	254, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	2 cut(s)	74, 573
AluI	AGCT	2 cut(s)	74, 573
Alw26I	GTCTC	2 cut(s)	9, 162
AlwI	GGATC	1 cut(s)	679
Aor13HI	TCCGGA	1 cut(s)	434
AoxI	GGCC	1 cut(s)	606
ApeKI	GCWGC	1 cut(s)	665
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	607
AsuHPI	GGTGA	1 cut(s)	532
BbsI	GAAGAC	2 cut(s)	93, 632
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	4 cut(s)	253, 440, 488, 632
BciT130I	CCWGG	2 cut(s)	256, 611
BciVI	GTATCC	2 cut(s)	226, 661
BcoDI	GTCTC	2 cut(s)	9, 162
BfaI	CTAG	2 cut(s)	464, 578
BfmI	CTRYAG	3 cut(s)	393, 471, 666
BfuAI	ACCTGC	1 cut(s)	247
BfuI	GTATCC	2 cut(s)	226, 661
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	2 cut(s)	586, 666
BlsI	GCNGC	2 cut(s)	587, 667
Bme1390I	CCNGG	2 cut(s)	256, 611
BmgT120I	GGNCC	1 cut(s)	607
BmrFI	CCNGG	2 cut(s)	256, 611
BmsI	GCATC	5 cut(s)	300, 331, 409, 652, 666
BpiI	GAAGAC	2 cut(s)	93, 632
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bsa29I	ATCGAT	2 cut(s)	210, 674
BsaJI	CCNNGG	2 cut(s)	255, 609
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 592
Bse1I	ACTGG	1 cut(s)	528
BseAI	TCCGGA	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	256, 611
BseCI	ATCGAT	2 cut(s)	210, 674
BseDI	CCNNGG	2 cut(s)	255, 609
BseGI	GGATG	2 cut(s)	283, 346
BseLI	CCNNNNNNNGG	2 cut(s)	434, 592
BseMII	CTCAG	5 cut(s)	84, 167, 192, 261, 558
BseNI	ACTGG	1 cut(s)	528
BseRI	GAGGAG	4 cut(s)	29, 32, 35, 38
BseXI	GCAGC	1 cut(s)	652
Bsh1236I	CGCG	2 cut(s)	289, 559
BshFI	GGCC	1 cut(s)	608
BshVI	ATCGAT	2 cut(s)	210, 674
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	2 cut(s)	434, 592
BsmAI	GTCTC	2 cut(s)	9, 162
BsnI	GGCC	1 cut(s)	608
Bsp13I	TCCGGA	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	207, 385, 518, 671
BspACI	CCGC	1 cut(s)	586
BspANI	GGCC	1 cut(s)	608
BspCNI	CTCAG	5 cut(s)	83, 166, 191, 262, 557
BspDI	ATCGAT	2 cut(s)	210, 674
BspEI	TCCGGA	1 cut(s)	434
BspFNI	CGCG	2 cut(s)	289, 559
BspMAI	CTGCAG	2 cut(s)	397, 670
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	679
BspQI	GCTCTTC	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	528
BssECI	CCNNGG	2 cut(s)	255, 609
BssMI	GATC	4 cut(s)	207, 385, 518, 671
BssNAI	GTATAC	1 cut(s)	267
Bst1107I	GTATAC	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	256, 611
Bst4CI	ACNGT	2 cut(s)	166, 634
Bst6I	CTCTTC	1 cut(s)	543
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	6 cut(s)	70, 153, 178, 270, 544, 658
BstF5I	GGATG	2 cut(s)	283, 346
BstFNI	CGCG	2 cut(s)	289, 559
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	4 cut(s)	210, 388, 521, 674
BstMAI	GTCTC	2 cut(s)	9, 162
BstMBI	GATC	4 cut(s)	207, 385, 518, 671
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 476
BstNI	CCWGG	2 cut(s)	256, 611
BstSCI	CCNGG	2 cut(s)	254, 609
BstSFI	CTRYAG	3 cut(s)	393, 471, 666
BstUI	CGCG	2 cut(s)	289, 559
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	2 cut(s)	93, 632
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BstZ17I	GTATAC	1 cut(s)	267
Bsu15I	ATCGAT	2 cut(s)	210, 674
BsuI	GTATCC	2 cut(s)	226, 661
BsuRI	GGCC	1 cut(s)	608
BsuTUI	ATCGAT	2 cut(s)	210, 674
BtsCI	GGATG	2 cut(s)	283, 346
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	4 cut(s)	60, 162, 186, 521
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	681
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	607
ClaI	ATCGAT	2 cut(s)	210, 674
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	1 cut(s)	694
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	6 cut(s)	70, 153, 178, 270, 544, 658
DpnI	GATC	4 cut(s)	209, 387, 520, 673
DpnII	GATC	4 cut(s)	207, 385, 518, 671
DrdI	GACNNNNNNGTC	1 cut(s)	321
DseDI	GACNNNNNNGTC	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	254, 609
FaeI	CATG	1 cut(s)	697
FaiI	YATR	7 cut(s)	267, 356, 378, 430, 444, 473, 695
FatI	CATG	1 cut(s)	693
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	586, 666
FokI	GGATG	2 cut(s)	290, 353
Fsp4HI	GCNGC	2 cut(s)	586, 666
FspBI	CTAG	2 cut(s)	464, 578
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	2 cut(s)	586, 666
HaeIII	GGCC	1 cut(s)	608
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	1 cut(s)	697
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HinfI	GANTC	2 cut(s)	137, 567
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	3 cut(s)	184, 267, 540
Hpy188I	TCNGA	4 cut(s)	9, 232, 547, 624
Hpy188III	TCNNGA	4 cut(s)	77, 134, 383, 435
Hpy8I	GTNNAC	3 cut(s)	184, 267, 540
HpyAV	CCTTC	4 cut(s)	67, 268, 365, 664
HpyCH4III	ACNGT	2 cut(s)	166, 634
HpyCH4V	TGCA	5 cut(s)	26, 65, 199, 395, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 476
HpyF3I	CTNAG	6 cut(s)	70, 153, 178, 270, 544, 658
Hsp92II	CATG	1 cut(s)	697
HspAI	GCGC	1 cut(s)	287
Kpn2I	TCCGGA	1 cut(s)	434
Kzo9I	GATC	4 cut(s)	207, 385, 518, 671
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	2 cut(s)	42, 59
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	5 cut(s)	300, 331, 409, 652, 666
MaeI	CTAG	2 cut(s)	464, 578
MaeIII	GTNAC	2 cut(s)	250, 350
MalI	GATC	4 cut(s)	209, 387, 520, 673
MboI	GATC	4 cut(s)	207, 385, 518, 671
MboII	GAAGA	5 cut(s)	23, 98, 560, 637, 709
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	1 cut(s)	27
MluI	ACGCGT	1 cut(s)	557
MroI	TCCGGA	1 cut(s)	434
MseI	TTAA	2 cut(s)	590, 721
MslI	CAYNNNNRTG	3 cut(s)	81, 417, 698
MspA1I	CMGCKG	1 cut(s)	573
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	256, 611
MvaI	CCWGG	2 cut(s)	256, 611
MvnI	CGCG	2 cut(s)	289, 559
MwoI	GCNNNNNNNGC	2 cut(s)	71, 476
NdeII	GATC	4 cut(s)	207, 385, 518, 671
NlaIII	CATG	1 cut(s)	697
PaqCI	CACCTGC	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	137, 567
PkrI	GCNGC	2 cut(s)	587, 667
Psp6I	CCWGG	2 cut(s)	254, 609
PspGI	CCWGG	2 cut(s)	254, 609
PspPI	GGNCC	1 cut(s)	607
PstI	CTGCAG	2 cut(s)	397, 670
PsuI	RGATCY	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	573
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
RseI	CAYNNNNRTG	3 cut(s)	81, 417, 698
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	590, 721
SatI	GCNGC	2 cut(s)	586, 666
Sau3AI	GATC	4 cut(s)	207, 385, 518, 671
Sau96I	GGNCC	1 cut(s)	607
ScrFI	CCNGG	2 cut(s)	256, 611
SetI	ASST	9 cut(s)	76, 152, 241, 296, 409, 469, 500, 545, 575
SfaNI	GCATC	5 cut(s)	300, 331, 409, 652, 666
SfcI	CTRYAG	3 cut(s)	393, 471, 666
SmiMI	CAYNNNNRTG	3 cut(s)	81, 417, 698
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	586
SspMI	CTAG	2 cut(s)	464, 578
StyD4I	CCNGG	2 cut(s)	254, 609
TaaI	ACNGT	2 cut(s)	166, 634
TaqI	TCGA	4 cut(s)	210, 221, 674, 709
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	487
TauI	GCSGC	1 cut(s)	588
TfiI	GAWTC	2 cut(s)	137, 567
Tru1I	TTAA	2 cut(s)	590, 721
Tru9I	TTAA	2 cut(s)	590, 721
TscAI	CASTG	4 cut(s)	67, 169, 186, 528
TseI	GCWGC	1 cut(s)	665
TspDTI	ATGAA	4 cut(s)	99, 228, 286, 710
TspRI	CASTG	4 cut(s)	67, 169, 186, 528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	266
XspI	CTAG	2 cut(s)	464, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.