Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0017039

Physical Location & Seq

Genomic Coordinates Forward (+)

4315004 .. 4316155

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05011.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAGTTGGCATGGATACACCATATATACTACCGAGGAGAGGAATATTACATGGGCCAGAAAGATGATGGAAGAATCAAAGTGGCACGAACTCCCAGTTGAAGTCCTAGAGTTGATCATGAACAAGATTGCTTCCATGGACATCCTCCGTTTCGAAGCAGTTTGTTCTTCTTGGAAATTAGCAGCAAAATCTTACGTTGCTTCCCCATATTACAATCCTTTGCCTCAAACTCCATGGCTCATGCTTCGTAATAATCAAGAAGATAAAAAAAGTTGGCGATTCTTTAGCCTTGAGGAGAAAAGGGTTTACACCATCAAGAACGTGTTCGAAGGCTTCCAAGATGATTGGTGCGTGGGTTCTTCCCATGGGTGGCTGCTGATTATGGACAGTAAAGCTGTCTTTAATCTTGTGAATCCGATTGCAAGAGCTACCATTGGACTCCCAGACATTCAGACTCTTCCTGAATTCACCACAAACTTTTCTGGAGATCATATTTTTAAAACTGCTGTTTCGTTGGACCCGTCTCGCAACAAAAACTTTGTCATGGCACTGTTAGCTACACGACCATCAAGACTTGCCTTCTACAAACATGAAGATAAAACATGGAAAAGCTTGGAACTGGGTAAAGTCTATGAGGATATTATATTCCACCATGGACAACTCTATGCATTGCGTTGGAACGGGGAAGTTGCAGTTTGGGACTTCAAGAAACCACTTCCTGTGAAAACCACGTACCTTCAAAACTCTGCATATGTAGGCTCGATTAGGGCTAGTTATTTGGTGGAGTCATTAGGTGACATTTTGCAAGTGCAGCGGATTTTACAAAAGGACATGTTTGGTGATTCCTACATAACATCGCACTTTCGGGTGTTTAGGATGAATATAACTACTGCAAACTGGGAGAGATTGGAAAGCTTGGGTGAGCGGATTTTATTTTGGGGTCGACATGGATCGATAACATCATCAGCTTTGGATTTTACAGAATTGAATGAAAACTCGATATATCATTATGATAACGGAACTAGTCATAATGTTGGAGCATACAGCCTAACACAAAAAAATATGGAGCCAGTTTACAAATTTGAGAAGTGGAGAACTGATCGAGTACCCTTCTGGATTGTTCCCGATCTTTGTTTAAGTTACAGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

384

Amino Acids

44.79

Weight (kDa)

7.18

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	94 - 349	8.8e-53	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05011 FvH4_4g05012
rosa_chinensis	RchiOBHm_Chr4g0395901
rosa_laevigata	RLG00000003519
rosa_multiflora	Rmu_sc0001103.1_g000012 Rmu_sc0002266.1_g000025 Rmu_sc0007757.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253690
rosa_rugosa	Rorug07G0076900 Rorug07G0205800
rosa_samantha	Rh7BG337100 Rh7CG219100 Rh7DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	925
AccI	GTMKAC	1 cut(s)	943
AciI	CCGC	2 cut(s)	814, 925
AclWI	GGATC	1 cut(s)	958
AcsI	RAATTY	2 cut(s)	464, 1079
AfaI	GTAC	2 cut(s)	734, 1107
AfiI	CCNNNNNNNGG	2 cut(s)	39, 369
AflIII	ACRYGT	2 cut(s)	321, 831
AgsI	TTSAA	4 cut(s)	101, 706, 740, 988
AhlI	ACTAGT	1 cut(s)	1022
AluBI	AGCT	6 cut(s)	395, 428, 557, 612, 915, 968
AluI	AGCT	6 cut(s)	395, 428, 557, 612, 915, 968
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	1 cut(s)	958
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	3 cut(s)	182, 373, 811
ApoI	RAATTY	2 cut(s)	464, 1079
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	54, 517
AsuHPI	GGTGA	4 cut(s)	460, 806, 851, 932
AsuII	TTCGAA	2 cut(s)	153, 327
AvaII	GGWCC	1 cut(s)	517
BbvI	GCAGC	3 cut(s)	194, 360, 823
BccI	CCATC	3 cut(s)	61, 320, 574
BciVI	GTATCC	1 cut(s)	8
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	528
BcuI	ACTAGT	1 cut(s)	1022
BfaI	CTAG	3 cut(s)	107, 771, 1023
BfuI	GTATCC	1 cut(s)	8
BisI	GCNGC	3 cut(s)	183, 374, 812
BlsI	GCNGC	3 cut(s)	184, 375, 813
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	2 cut(s)	54, 517
BmiI	GGNNCC	2 cut(s)	519, 1068
BmrI	ACTGGG	3 cut(s)	89, 629, 907
BmuI	ACTGGG	3 cut(s)	89, 629, 907
BpmI	CTGGAG	1 cut(s)	504
Bpu14I	TTCGAA	2 cut(s)	153, 327
BpuEI	CTTGAG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	953
BsaAI	YACGTR	1 cut(s)	732
BsaJI	CCNNGG	5 cut(s)	33, 135, 233, 364, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 369
Bse1I	ACTGG	4 cut(s)	95, 624, 902, 1070
Bse3DI	GCAATG	1 cut(s)	668
BseCI	ATCGAT	1 cut(s)	953
BseDI	CCNNGG	5 cut(s)	33, 135, 233, 364, 652
BseGI	GGATG	2 cut(s)	141, 882
BseLI	CCNNNNNNNGG	2 cut(s)	39, 369
BseMI	GCAATG	1 cut(s)	668
BseNI	ACTGG	4 cut(s)	95, 624, 902, 1070
BseRI	GAGGAG	2 cut(s)	50, 308
BseXI	GCAGC	3 cut(s)	194, 360, 823
BsgI	GTGCAG	1 cut(s)	830
BshFI	GGCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	953
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	2 cut(s)	39, 369
BsmAI	GTCTC	1 cut(s)	528
BsmBI	CGTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	1 cut(s)	56
Bsp119I	TTCGAA	2 cut(s)	153, 327
Bsp143I	GATC	5 cut(s)	114, 487, 950, 1099, 1126
Bsp19I	CCATGG	4 cut(s)	135, 233, 364, 652
BspACI	CCGC	2 cut(s)	814, 925
BspANI	GGCC	1 cut(s)	56
BspDI	ATCGAT	1 cut(s)	953
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	519, 1068
BspPI	GGATC	1 cut(s)	958
BspT104I	TTCGAA	2 cut(s)	153, 327
BsrBI	CCGCTC	1 cut(s)	925
BsrDI	GCAATG	1 cut(s)	668
BsrI	ACTGG	4 cut(s)	95, 624, 902, 1070
BssECI	CCNNGG	5 cut(s)	33, 135, 233, 364, 652
BssMI	GATC	5 cut(s)	114, 487, 950, 1099, 1126
BssT1I	CCWWGG	4 cut(s)	135, 233, 364, 652
Bst4CI	ACNGT	3 cut(s)	389, 552, 1145
Bst6I	CTCTTC	1 cut(s)	462
BstBAI	YACGTR	1 cut(s)	732
BstBI	TTCGAA	2 cut(s)	153, 327
BstDSI	CCRYGG	4 cut(s)	135, 233, 364, 652
BstF5I	GGATG	2 cut(s)	141, 882
BstKTI	GATC	5 cut(s)	117, 490, 953, 1102, 1129
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	5 cut(s)	114, 487, 950, 1099, 1126
BstMWI	GCNNNNNNNGC	2 cut(s)	554, 811
BstNSI	RCATGY	1 cut(s)	835
BstV1I	GCAGC	3 cut(s)	194, 360, 823
Bsu15I	ATCGAT	1 cut(s)	953
BsuI	GTATCC	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	56
BsuTUI	ATCGAT	1 cut(s)	953
BtgI	CCRYGG	4 cut(s)	135, 233, 364, 652
BtgZI	GCGATG	1 cut(s)	840
BtsCI	GGATG	2 cut(s)	141, 882
BtsIMutI	CAGTG	1 cut(s)	548
CciI	TCATGA	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	54, 517
ClaI	ATCGAT	1 cut(s)	953
Csp6I	GTAC	2 cut(s)	733, 1106
CviQI	GTAC	2 cut(s)	733, 1106
DpnI	GATC	5 cut(s)	116, 489, 952, 1101, 1128
DpnII	GATC	5 cut(s)	114, 487, 950, 1099, 1126
DraI	TTTAAA	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	4 cut(s)	135, 233, 364, 652
Eco47I	GGWCC	1 cut(s)	517
EcoRI	GAATTC	1 cut(s)	464
EcoT14I	CCWWGG	4 cut(s)	135, 233, 364, 652
EcoT22I	ATGCAT	1 cut(s)	670
ErhI	CCWWGG	4 cut(s)	135, 233, 364, 652
Esp3I	CGTCTC	1 cut(s)	528
FaqI	GGGAC	1 cut(s)	713
FauNDI	CATATG	1 cut(s)	751
FbaI	TGATCA	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	943
Fnu4HI	GCNGC	3 cut(s)	183, 374, 812
FokI	GGATG	2 cut(s)	128, 889
Fsp4HI	GCNGC	3 cut(s)	183, 374, 812
FspBI	CTAG	3 cut(s)	107, 771, 1023
GluI	GCNGC	3 cut(s)	183, 374, 812
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	944
HindII	GTYRAC	1 cut(s)	944
HindIII	AAGCTT	2 cut(s)	610, 913
HinfI	GANTC	7 cut(s)	74, 279, 412, 438, 454, 785, 842
HphI	GGTGA	4 cut(s)	460, 806, 851, 932
Hpy166II	GTNNAC	3 cut(s)	307, 944, 1075
Hpy188I	TCNGA	2 cut(s)	417, 453
Hpy188III	TCNNGA	9 cut(s)	118, 257, 316, 461, 483, 570, 706, 1114, 1124
Hpy8I	GTNNAC	3 cut(s)	307, 944, 1075
HpyAV	CCTTC	4 cut(s)	323, 589, 746, 1120
HpyCH4III	ACNGT	3 cut(s)	389, 552, 1145
HpyCH4IV	ACGT	3 cut(s)	195, 321, 731
HpyCH4V	TGCA	7 cut(s)	422, 668, 692, 749, 805, 811, 893
HpyF10VI	GCNNNNNNNGC	2 cut(s)	554, 811
HpySE526I	ACGT	3 cut(s)	195, 321, 731
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	5 cut(s)	114, 487, 950, 1099, 1126
LmnI	GCTCC	2 cut(s)	1037, 1066
Lsp1109I	GCAGC	3 cut(s)	194, 360, 823
MaeI	CTAG	3 cut(s)	107, 771, 1023
MaeII	ACGT	3 cut(s)	195, 321, 731
MaeIII	GTNAC	2 cut(s)	794, 1139
MalI	GATC	5 cut(s)	116, 489, 952, 1101, 1128
MbiI	CCGCTC	1 cut(s)	925
MboI	GATC	5 cut(s)	114, 487, 950, 1099, 1126
MboII	GAAGA	6 cut(s)	83, 159, 272, 351, 449, 605
MluCI	AATT	4 cut(s)	176, 464, 983, 1079
MlyI	GAGTC	3 cut(s)	432, 448, 794
MmeI	TCCRAC	3 cut(s)	495, 656, 1015
MnlI	CCTC	6 cut(s)	28, 33, 155, 234, 286, 628
Mph1103I	ATGCAT	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	3 cut(s)	402, 498, 1136
MspA1I	CMGCKG	1 cut(s)	814
MwoI	GCNNNNNNNGC	2 cut(s)	554, 811
NcoI	CCATGG	4 cut(s)	135, 233, 364, 652
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	5 cut(s)	114, 487, 950, 1099, 1126
NlaIV	GGNNCC	2 cut(s)	519, 1068
NmuCI	GTSAC	1 cut(s)	794
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	1 cut(s)	835
NspV	TTCGAA	2 cut(s)	153, 327
PagI	TCATGA	1 cut(s)	117
PciI	ACATGT	1 cut(s)	831
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	4 cut(s)	74, 279, 412, 842
PkrI	GCNGC	3 cut(s)	184, 375, 813
PleI	GAGTC	3 cut(s)	432, 448, 793
PpsI	GAGTC	3 cut(s)	432, 448, 793
Ppu21I	YACGTR	1 cut(s)	732
PscI	ACATGT	1 cut(s)	831
PspN4I	GGNNCC	2 cut(s)	519, 1068
PspPI	GGNCC	2 cut(s)	54, 517
RsaI	GTAC	2 cut(s)	734, 1107
RsaNI	GTAC	2 cut(s)	733, 1106
SalI	GTCGAC	1 cut(s)	942
SaqAI	TTAA	3 cut(s)	402, 498, 1136
SatI	GCNGC	3 cut(s)	183, 374, 812
Sau3AI	GATC	5 cut(s)	114, 487, 950, 1099, 1126
Sau96I	GGNCC	2 cut(s)	54, 517
SchI	GAGTC	3 cut(s)	432, 448, 794
SfuI	TTCGAA	2 cut(s)	153, 327
SinI	GGWCC	1 cut(s)	517
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SpeI	ACTAGT	1 cut(s)	1022
Sse9I	AATT	4 cut(s)	176, 464, 983, 1079
SsiI	CCGC	2 cut(s)	814, 925
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	3 cut(s)	107, 771, 1023
StyI	CCWWGG	4 cut(s)	135, 233, 364, 652
TaaI	ACNGT	3 cut(s)	389, 552, 1145
TaiI	ACGT	3 cut(s)	198, 324, 734
TaqI	TCGA	7 cut(s)	153, 327, 761, 943, 953, 998, 1102
TasI	AATT	4 cut(s)	176, 464, 983, 1079
TfiI	GAWTC	4 cut(s)	74, 279, 412, 842
Tru1I	TTAA	3 cut(s)	402, 498, 1136
Tru9I	TTAA	3 cut(s)	402, 498, 1136
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	3 cut(s)	182, 373, 811
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	4 cut(s)	134, 606, 893, 1005
TspGWI	ACGGA	2 cut(s)	137, 1032
TspRI	CASTG	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	2 cut(s)	464, 1079
XceI	RCATGY	1 cut(s)	835
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	3 cut(s)	107, 771, 1023
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.