Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0017039

Physical Location & Seq

Genomic Coordinates Forward (+)

35145550 .. 35147773

Gene Structure 2224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG337100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGCCCGGCGACGCCATCATCGACGGCGGCAACGAGTGTCAATACTCTCGCTTCGTGGAGTCATTGGGTGAGATTTTGCGTGTGACGCTGGTTTTGGTCAAGAGCTTGGATGATAGTTCCCACAAAGAATCGTATTTTGAGGTCTATAAGATGAATTTGAGGCTTATAAGAAGTCGAGCTACGTGGGAGAAAGTGGAAAGTTTAGGTCCCAGATTTATAATTTGGTGCCGAAATCGACCTTCGATAGCATTATCCGCCTTATATTTTACAGAATTTGAAGAAAACTCGATTTACTGTTATCATCATCGTGGTTACGTTTTCGTGTACAACTTAAAAGATAAAGTTGTGAAGCCATGTTACAAATTTGATGAGTCCACAACGGATCAAGAACCGTTCTGGATTGTTCCCAATCTATCCCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

142

Amino Acids

16.72

Weight (kDa)

5.93

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	14 - 111	8.7e-13	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05011 FvH4_4g05012
rosa_chinensis	RchiOBHm_Chr4g0395901
rosa_laevigata	RLG00000003519
rosa_multiflora	Rmu_sc0001103.1_g000012 Rmu_sc0002266.1_g000025 Rmu_sc0007757.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253690
rosa_rugosa	Rorug07G0076900 Rorug07G0205800
rosa_samantha	Rh7BG337100 Rh7CG219100 Rh7DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	170, 221
AccB1I	GGYRCC	1 cut(s)	228
AciI	CCGC	2 cut(s)	30, 258
AclWI	GGATC	1 cut(s)	393
AcsI	RAATTY	3 cut(s)	157, 275, 365
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	281
AluBI	AGCT	2 cut(s)	108, 182
AluI	AGCT	2 cut(s)	108, 182
AlwI	GGATC	1 cut(s)	393
ApoI	RAATTY	3 cut(s)	157, 275, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	79, 111
AspS9I	GGNCC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	4 cut(s)	166, 198, 344, 376
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	9
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	3 cut(s)	6, 211, 230
BmrFI	CCNGG	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	15
BseGI	GGATG	1 cut(s)	118
BshNI	GGYRCC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	2 cut(s)	30, 258
BspLI	GGNNCC	3 cut(s)	6, 211, 230
BspPI	GGATC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	327
BssMI	GATC	1 cut(s)	385
BssNI	GRCGYC	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	299, 396
BstACI	GRCGYC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 257
BstSCI	CCNGG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	2 cut(s)	23, 97
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	1 cut(s)	357
CviJI	RGCY	5 cut(s)	7, 108, 166, 182, 355
CviKI_1	RGCY	5 cut(s)	7, 108, 166, 182, 355
CviQI	GTAC	1 cut(s)	328
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	360
FaiI	YATR	5 cut(s)	150, 170, 221, 265, 358
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	1 cut(s)	356
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	31
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	2 cut(s)	23, 97
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	360
HinfI	GANTC	3 cut(s)	62, 131, 374
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	328, 378
Hpy188III	TCNNGA	3 cut(s)	103, 389, 400
Hpy8I	GTNNAC	2 cut(s)	328, 378
Hpy99I	CGWCG	2 cut(s)	17, 29
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	299, 396
HpyCH4IV	ACGT	2 cut(s)	185, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 257
HpySE526I	ACGT	2 cut(s)	185, 318
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	385
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	22, 77, 226, 385
MaeII	ACGT	2 cut(s)	185, 318
MaeIII	GTNAC	3 cut(s)	85, 314, 359
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	4 cut(s)	157, 222, 275, 365
MlyI	GAGTC	2 cut(s)	71, 383
MnlI	CCTC	2 cut(s)	136, 156
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	88, 257
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	1 cut(s)	360
NlaIV	GGNNCC	3 cut(s)	6, 211, 230
NmuCI	GTSAC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 33
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	32
PleI	GAGTC	2 cut(s)	70, 382
PpsI	GAGTC	2 cut(s)	70, 382
Ppu21I	YACGTR	1 cut(s)	186
PpuMI	RGGWCCY	1 cut(s)	209
PsiI	TTATAA	2 cut(s)	170, 221
Psp5II	RGGWCCY	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	6, 211, 230
PspPI	GGNCC	1 cut(s)	209
PspPPI	RGGWCCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	2 cut(s)	71, 383
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	7 cut(s)	110, 147, 184, 188, 211, 244, 321
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	4 cut(s)	157, 222, 275, 365
SsiI	CCGC	2 cut(s)	30, 258
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	2 cut(s)	299, 396
TaiI	ACGT	2 cut(s)	188, 321
TaqI	TCGA	5 cut(s)	24, 178, 238, 245, 290
TasI	AATT	4 cut(s)	157, 222, 275, 365
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	3 cut(s)	157, 275, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.