Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0017039

Physical Location & Seq

Genomic Coordinates Forward (+)

20088552 .. 20089347

Gene Structure 796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG219100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGACAATGGCCGATGATCAGAATTGCTGCACCAAAAAGAGAGCACAGCAATGCGAATCAAAGTGGTCCGAGCTCCCAATTGAAATCGCAGATTTGATCTTGGAAAAGCTTGCGTCCATTGACATCCTTCGCTTTAAAGCAGTTTGTTCTTCTTGGAAGTATGCTGCAAACTCTTACATCACTGCACCTTATTACAAGCCATTGCCTCAATCTCCATGGCTCGTGATTGGTAATGGTCAAGAAGACAACAGTTGCCGGTTTTTCAGTCTCGAAGAGAAAAAGGTCTATACCATCAAGAACATATTATTTGAAGGCTGTTGTGTGGGCTCATCACATGGGTGGCTGGTGATTATGAACAAGGATTCAATCTTAAATCTTTTCAATCCTGTTTCAGGTGAAAGCATTCAACTCTCAGATATTCGAGCTCTTGATGGCTTTTCCAGCTTTTCTAGTAGTGAAATATTGAAAGCTGTCCTTTCTTCGGAGCCGTCTGGCCGGAATAAGTTTTTCTTGACGATTTGCATTAGACAAACATCAAGAAGTAGGAGGTTTGATAAACTTGCAGTCTATAATCATGAAGACAAAACATGGAGTCCCTTGCTCGTTAACCCTAGCTCTCGGGAGATTGTATTCCTCAACGGCAAACTATTCGCATTGTTACCAAATGTAGTACAAGTTTGGGACTTCGAGAAATCTCGTCATGATAGGACAAATTTATATATTTTCAAACGGGATCGATCTTTGACTCGTACTTACTTGGTGAAATACAGTCAATACTCTCGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

262

Amino Acids

30.16

Weight (kDa)

9.03

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	22 - 58	2.5e-06	F-box domain
Beta-prop_KIB1-4	PF03478	87 - 256	5.3e-19	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05011 FvH4_4g05012
rosa_chinensis	RchiOBHm_Chr4g0395901
rosa_laevigata	RLG00000003519
rosa_multiflora	Rmu_sc0001103.1_g000012 Rmu_sc0002266.1_g000025 Rmu_sc0007757.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253690
rosa_rugosa	Rorug07G0076900 Rorug07G0205800
rosa_samantha	Rh7BG337100 Rh7CG219100 Rh7DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	783
AclWI	GGATC	1 cut(s)	741
AcoI	YGGCCR	2 cut(s)	9, 493
AcsI	RAATTY	1 cut(s)	712
AfaI	GTAC	2 cut(s)	672, 751
AfiI	CCNNNNNNNGG	2 cut(s)	392, 481
AgsI	TTSAA	7 cut(s)	83, 311, 366, 382, 407, 466, 727
AleI	CACNNNNGTG	1 cut(s)	337
AluBI	AGCT	6 cut(s)	73, 109, 425, 444, 470, 615
AluI	AGCT	6 cut(s)	73, 109, 425, 444, 470, 615
Alw21I	GWGCWC	3 cut(s)	46, 75, 427
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	741
Ama87I	CYCGRG	1 cut(s)	618
AoxI	GGCC	2 cut(s)	9, 493
ApeKI	GCWGC	2 cut(s)	27, 164
ApoI	RAATTY	1 cut(s)	712
Asp700I	GAANNNNTTC	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	3 cut(s)	358, 407, 772
AvaI	CYCGRG	1 cut(s)	618
AvaII	GGWCC	1 cut(s)	66
BanII	GRGCYC	3 cut(s)	75, 329, 427
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	249, 585
Bbv12I	GWGCWC	3 cut(s)	46, 75, 427
BbvI	GCAGC	2 cut(s)	14, 151
BccI	CCATC	2 cut(s)	299, 425
BceAI	ACGGC	2 cut(s)	472, 655
BcgI	CGANNNNNNTGC	2 cut(s)	631, 665
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	2 cut(s)	450, 612
BisI	GCNGC	2 cut(s)	28, 165
BlsI	GCNGC	2 cut(s)	29, 166
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	249, 585
Bsa29I	ATCGAT	1 cut(s)	736
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 481
Bse118I	RCCGGY	1 cut(s)	255
Bse3DI	GCAATG	2 cut(s)	56, 200
BseCI	ATCGAT	1 cut(s)	736
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	392, 481
BseMI	GCAATG	2 cut(s)	56, 200
BseMII	CTCAG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	14, 151
BsgI	GTGCAG	2 cut(s)	13, 168
Bsh1236I	CGCG	1 cut(s)	783
BshFI	GGCC	2 cut(s)	11, 495
BshVI	ATCGAT	1 cut(s)	736
BsiHKAI	GWGCWC	3 cut(s)	46, 75, 427
BsiHKCI	CYCGRG	1 cut(s)	618
BsiSI	CCGG	2 cut(s)	256, 496
BslFI	GGGAC	2 cut(s)	579, 695
BslI	CCNNNNNNNGG	2 cut(s)	392, 481
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	2 cut(s)	579, 695
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	11, 495
BsoBI	CYCGRG	1 cut(s)	618
Bsp1286I	GDGCHC	4 cut(s)	46, 75, 329, 427
Bsp143I	GATC	4 cut(s)	16, 96, 733, 737
Bsp19I	CCATGG	1 cut(s)	215
BspANI	GGCC	2 cut(s)	11, 495
BspCNI	CTCAG	1 cut(s)	425
BspDI	ATCGAT	1 cut(s)	736
BspFNI	CGCG	1 cut(s)	783
BspHI	TCATGA	2 cut(s)	574, 700
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	1 cut(s)	741
BsrDI	GCAATG	2 cut(s)	56, 200
BsrFI	RCCGGY	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	4 cut(s)	16, 96, 733, 737
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	251, 770
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	412
BstDSI	CCRYGG	1 cut(s)	215
BstENI	CCTNNNNNAGG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	783
BstKTI	GATC	4 cut(s)	19, 99, 736, 740
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	4 cut(s)	16, 96, 733, 737
BstMWI	GCNNNNNNNGC	1 cut(s)	441
BstUI	CGCG	1 cut(s)	783
BstV1I	GCAGC	2 cut(s)	14, 151
BstV2I	GAAGAC	2 cut(s)	249, 585
Bsu15I	ATCGAT	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	11, 495
BsuTUI	ATCGAT	1 cut(s)	736
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	111
CciI	TCATGA	2 cut(s)	574, 700
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	66
ClaI	ATCGAT	1 cut(s)	736
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	671, 750
CviAII	CATG	5 cut(s)	216, 335, 575, 588, 701
CviQI	GTAC	2 cut(s)	671, 750
DdeI	CTNAG	1 cut(s)	412
DpnI	GATC	4 cut(s)	18, 98, 735, 739
DpnII	GATC	4 cut(s)	16, 96, 733, 737
DraI	TTTAAA	1 cut(s)	136
EaeI	YGGCCR	2 cut(s)	9, 493
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	2 cut(s)	73, 425
Eco130I	CCWWGG	1 cut(s)	215
Eco24I	GRGCYC	3 cut(s)	75, 329, 427
Eco47I	GGWCC	1 cut(s)	66
Eco53kI	GAGCTC	2 cut(s)	73, 425
Eco88I	CYCGRG	1 cut(s)	618
EcoICRI	GAGCTC	2 cut(s)	73, 425
EcoNI	CCTNNNNNAGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	215
EcoT38I	GRGCYC	3 cut(s)	75, 329, 427
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	5 cut(s)	219, 338, 578, 591, 704
FalI	AAGNNNNNCTT	4 cut(s)	459, 491, 494, 526
FaqI	GGGAC	2 cut(s)	579, 695
FatI	CATG	5 cut(s)	215, 334, 574, 587, 700
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	28, 165
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	3 cut(s)	75, 329, 427
Fsp4HI	GCNGC	2 cut(s)	28, 165
FspBI	CTAG	2 cut(s)	450, 612
GluI	GCNGC	2 cut(s)	28, 165
HaeIII	GGCC	2 cut(s)	11, 495
HapII	CCGG	2 cut(s)	256, 496
HgaI	GACGC	1 cut(s)	102
Hin1II	CATG	5 cut(s)	219, 338, 578, 591, 704
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	4 cut(s)	56, 362, 592, 745
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	2 cut(s)	256, 496
HphI	GGTGA	3 cut(s)	358, 407, 772
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	4 cut(s)	21, 70, 415, 484
Hpy8I	GTNNAC	1 cut(s)	607
HpyAV	CCTTC	2 cut(s)	137, 305
HpyCH4III	ACNGT	2 cut(s)	251, 770
HpyCH4V	TGCA	5 cut(s)	30, 167, 185, 522, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	441
HpyF3I	CTNAG	1 cut(s)	412
Hsp92II	CATG	5 cut(s)	219, 338, 578, 591, 704
Ksp22I	TGATCA	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	4 cut(s)	16, 96, 733, 737
LmnI	GCTCC	2 cut(s)	78, 484
LpnPI	CCDG	7 cut(s)	269, 329, 378, 399, 454, 477, 509
Lsp1109I	GCAGC	2 cut(s)	14, 151
MaeI	CTAG	2 cut(s)	450, 612
MaeIII	GTNAC	1 cut(s)	657
MalI	GATC	4 cut(s)	18, 98, 735, 739
MboI	GATC	4 cut(s)	16, 96, 733, 737
MboII	GAAGA	5 cut(s)	141, 254, 284, 471, 590
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	4 cut(s)	46, 75, 329, 427
MluCI	AATT	3 cut(s)	22, 78, 712
MlyI	GAGTC	2 cut(s)	601, 739
MnlI	CCTC	3 cut(s)	216, 540, 644
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	3 cut(s)	135, 371, 606
MslI	CAYNNNNRTG	2 cut(s)	49, 337
MspI	CCGG	2 cut(s)	256, 496
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	402
MvnI	CGCG	1 cut(s)	783
MwoI	GCNNNNNNNGC	1 cut(s)	441
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	16, 96, 733, 737
NlaIII	CATG	5 cut(s)	219, 338, 578, 591, 704
NlaIV	GGNNCC	1 cut(s)	486
OliI	CACNNNNGTG	1 cut(s)	337
PagI	TCATGA	2 cut(s)	574, 700
PctI	GAATGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	56, 362
PkrI	GCNGC	2 cut(s)	29, 166
PleI	GAGTC	2 cut(s)	600, 739
PpsI	GAGTC	2 cut(s)	600, 739
Psp124BI	GAGCTC	2 cut(s)	75, 427
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	2 cut(s)	672, 751
RsaNI	GTAC	2 cut(s)	671, 750
RseI	CAYNNNNRTG	2 cut(s)	49, 337
SacI	GAGCTC	2 cut(s)	75, 427
SaqAI	TTAA	3 cut(s)	135, 371, 606
SatI	GCNGC	2 cut(s)	28, 165
Sau3AI	GATC	4 cut(s)	16, 96, 733, 737
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	601, 739
SduI	GDGCHC	4 cut(s)	46, 75, 329, 427
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	2 cut(s)	49, 337
Sse9I	AATT	3 cut(s)	22, 78, 712
SspI	AATATT	1 cut(s)	462
SspMI	CTAG	2 cut(s)	450, 612
SstI	GAGCTC	2 cut(s)	75, 427
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	251, 770
TaqI	TCGA	4 cut(s)	270, 421, 687, 736
TasI	AATT	3 cut(s)	22, 78, 712
TatI	WGTACW	1 cut(s)	670
TfiI	GAWTC	2 cut(s)	56, 362
Tru1I	TTAA	3 cut(s)	135, 371, 606
Tru9I	TTAA	3 cut(s)	135, 371, 606
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	2 cut(s)	27, 164
TspDTI	ATGAA	2 cut(s)	368, 591
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	390
XapI	RAATTY	1 cut(s)	712
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	2 cut(s)	450, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.