Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017039

Physical Location & Seq

Genomic Coordinates Reverse (-)

47765868 .. 47766325

Gene Structure 458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCCGATGATCGAATTGCTGCACCGGAAAGAGAGCACAGCAATGCGAATCAAAGTGATTTGATCTTGGAAAAGCTTGCGTCCATTGACATCCTTCGCTTTAAAGCAGTTTGTTCTTCTTGGAAGTATGCTGCAAACTCTTACATCACCGCACCTTATTACAAGCCATTGCCTCAATCTCCATGGCTCGTGCTTGGTAATGGTCAAGAAGACAACGATTGCCGGTTTTTCGGTCTCGAAGAGAAAAAGGTCTATACCATCAAGAACATATTATTTGAAGGTCGTTGTGTGGGCTCATCACATGGGTGGCTGGTGATTATGAACAAGGATTCAATCTTAAATCTTTTCAATCTGTTTCGGGTGAAAGCATTCAACTCTCGGATATTCGAGCTTTTGATGGCTTTTCCAGCTTTTCTAGTAGTGAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

143

Amino Acids

16.42

Weight (kDa)

8.42

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05011 FvH4_4g05012
rosa_chinensis	RchiOBHm_Chr4g0395901
rosa_laevigata	RLG00000003519
rosa_multiflora	Rmu_sc0001103.1_g000012 Rmu_sc0002266.1_g000025 Rmu_sc0007757.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253690
rosa_rugosa	Rorug07G0076900 Rorug07G0205800
rosa_samantha	Rh7BG337100 Rh7CG219100 Rh7DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	4 cut(s)	278, 333, 349, 373
AleI	CACNNNNGTG	1 cut(s)	304
AluBI	AGCT	3 cut(s)	76, 391, 410
AluI	AGCT	3 cut(s)	76, 391, 410
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	20, 131
Asp700I	GAANNNNTTC	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	139, 325, 373
BanII	GRGCYC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	7, 118
BccI	CCATC	2 cut(s)	266, 391
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	416
BisI	GCNGC	2 cut(s)	21, 132
BlsI	GCNGC	2 cut(s)	22, 133
BpiI	GAAGAC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	222
Bse3DI	GCAATG	2 cut(s)	49, 167
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	90
BseMI	GCAATG	2 cut(s)	49, 167
BseXI	GCAGC	2 cut(s)	7, 118
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	26, 223
BsmAI	GTCTC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	39, 296
Bsp143I	GATC	2 cut(s)	10, 63
Bsp19I	CCATGG	1 cut(s)	182
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	2 cut(s)	49, 167
BsrFI	RCCGGY	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	2 cut(s)	10, 63
BssSI	CACGAG	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	13, 66
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	10, 63
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	7, 118
BstV2I	GAAGAC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	222
CseI	GACGC	1 cut(s)	69
CviAII	CATG	2 cut(s)	183, 302
CviJI	RGCY	9 cut(s)	5, 76, 166, 187, 294, 310, 391, 401, 410
CviKI_1	RGCY	9 cut(s)	5, 76, 166, 187, 294, 310, 391, 401, 410
DpnI	GATC	2 cut(s)	12, 65
DpnII	GATC	2 cut(s)	10, 63
DraI	TTTAAA	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	2 cut(s)	186, 305
FaiI	YATR	6 cut(s)	129, 184, 255, 269, 303, 320
FatI	CATG	2 cut(s)	182, 301
Fnu4HI	GCNGC	2 cut(s)	21, 132
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	21, 132
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	2 cut(s)	21, 132
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	26, 223
HgaI	GACGC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	186, 305
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	2 cut(s)	49, 329
HpaII	CCGG	2 cut(s)	26, 223
HphI	GGTGA	3 cut(s)	139, 325, 373
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	3 cut(s)	206, 236, 262
HpyAV	CCTTC	2 cut(s)	104, 272
HpyCH4V	TGCA	2 cut(s)	23, 134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	186, 305
Kzo9I	GATC	2 cut(s)	10, 63
LpnPI	CCDG	4 cut(s)	39, 236, 296, 420
Lsp1109I	GCAGC	2 cut(s)	7, 118
MaeI	CTAG	1 cut(s)	416
MalI	GATC	2 cut(s)	12, 65
MboI	GATC	2 cut(s)	10, 63
MboII	GAAGA	3 cut(s)	108, 221, 251
MhlI	GDGCHC	2 cut(s)	39, 296
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	2 cut(s)	102, 338
MslI	CAYNNNNRTG	2 cut(s)	42, 304
MspI	CCGG	2 cut(s)	26, 223
Mva1269I	GAATGC	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	182
NdeII	GATC	2 cut(s)	10, 63
NlaIII	CATG	2 cut(s)	186, 305
OliI	CACNNNNGTG	1 cut(s)	304
PctI	GAATGC	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	49, 329
PkrI	GCNGC	2 cut(s)	22, 133
RseI	CAYNNNNRTG	2 cut(s)	42, 304
SaqAI	TTAA	2 cut(s)	102, 338
SatI	GCNGC	2 cut(s)	21, 132
Sau3AI	GATC	2 cut(s)	10, 63
SduI	GDGCHC	2 cut(s)	39, 296
SetI	ASST	6 cut(s)	78, 157, 252, 283, 393, 412
SmiMI	CAYNNNNRTG	2 cut(s)	42, 304
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	1 cut(s)	428
SspMI	CTAG	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	182
TaqI	TCGA	3 cut(s)	13, 237, 387
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	2 cut(s)	49, 329
Tru1I	TTAA	2 cut(s)	102, 338
Tru9I	TTAA	2 cut(s)	102, 338
TseI	GCWGC	2 cut(s)	20, 131
TspDTI	ATGAA	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.