Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0017039

Physical Location & Seq

Genomic Coordinates Forward (+)

4316432 .. 4316928

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05012.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCCGATGATCAGAATTGTGGCACCAAAACAGAAGACAACAATGTCAATCAAAGTGGTCAGATCGTCTTGGAAGCAGTTCGTTCGTCTTGGAAGTATGCTGCAAACTCTTACATCGTTGCACCTTATTACAAGCCTTTGCCTCAATCTCCATGGCTCGTGCTTGGTAAGGGTAATCAAGAAGCTAGACAAGAGTTGCCGGAGAAAGCATTCAAGTCTCAGATATTCGAGCAGCTCGCGATCGATCTTGGTGGATTTTCCAACTTATCAAGTACTCATGTATTGAACGTTGTCCTTTCCTCGGATCCATCTCGTCTTCTTGACGATTCACACTACTATGGGAAACATTGCAACCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

120

Amino Acids

13.26

Weight (kDa)

5.49

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05011 FvH4_4g05012
rosa_chinensis	RchiOBHm_Chr4g0395901
rosa_laevigata	RLG00000003519
rosa_multiflora	Rmu_sc0001103.1_g000012 Rmu_sc0002266.1_g000025 Rmu_sc0007757.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253690
rosa_rugosa	Rorug07G0076900 Rorug07G0205800
rosa_samantha	Rh7BG337100 Rh7CG219100 Rh7DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	23
AccII	CGCG	1 cut(s)	239
AclI	AACGTT	1 cut(s)	288
AclWI	GGATC	2 cut(s)	299, 312
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	214, 286
AluBI	AGCT	2 cut(s)	185, 235
AluI	AGCT	2 cut(s)	185, 235
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	299, 312
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	101, 232
Asp700I	GAANNNNTTC	2 cut(s)	78, 209
BamHI	GGATCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	158
BbsI	GAAGAC	2 cut(s)	42, 308
BbvI	GCAGC	2 cut(s)	88, 244
BccI	CCATC	1 cut(s)	316
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	186
BisI	GCNGC	2 cut(s)	102, 233
BlsI	GCNGC	2 cut(s)	103, 234
BmcAI	AGTACT	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	25, 306
BpiI	GAAGAC	2 cut(s)	42, 308
Bsa29I	ATCGAT	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	152, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	346
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	152, 300
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	88, 244
Bsh1236I	CGCG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	5 cut(s)	10, 63, 240, 244, 304
Bsp19I	CCATGG	1 cut(s)	152
Bsp68I	TCGCGA	1 cut(s)	239
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	25, 306
BspPI	GGATC	2 cut(s)	299, 312
BspT107I	GGYRCC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	152, 300
BssMI	GATC	5 cut(s)	10, 63, 240, 244, 304
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	239
BstKTI	GATC	5 cut(s)	13, 66, 243, 247, 307
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	5 cut(s)	10, 63, 240, 244, 304
BstMCI	CGRYCG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	88, 244
BstV2I	GAAGAC	2 cut(s)	42, 308
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	152
BtuMI	TCGCGA	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	273
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	2 cut(s)	153, 278
CviJI	RGCY	5 cut(s)	5, 136, 157, 185, 235
CviKI_1	RGCY	5 cut(s)	5, 136, 157, 185, 235
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	5 cut(s)	12, 65, 242, 246, 306
DpnII	GATC	5 cut(s)	10, 63, 240, 244, 304
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	2 cut(s)	156, 281
FaiI	YATR	5 cut(s)	99, 154, 279, 339, 358
FatI	CATG	2 cut(s)	152, 277
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	102, 233
Fsp4HI	GCNGC	2 cut(s)	102, 233
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	2 cut(s)	102, 233
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	2 cut(s)	156, 281
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	1 cut(s)	200
Hpy188I	TCNGA	4 cut(s)	15, 63, 222, 304
Hpy188III	TCNNGA	3 cut(s)	179, 238, 320
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	104, 122, 351
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	156, 281
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	5 cut(s)	10, 63, 240, 244, 304
LpnPI	CCDG	1 cut(s)	213
Lsp1109I	GCAGC	2 cut(s)	88, 244
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	288
MalI	GATC	5 cut(s)	12, 65, 242, 246, 306
MboI	GATC	5 cut(s)	10, 63, 240, 244, 304
MboII	GAAGA	2 cut(s)	47, 308
MflI	RGATCY	1 cut(s)	304
MluCI	AATT	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	2 cut(s)	153, 310
MroXI	GAANNNNTTC	2 cut(s)	78, 209
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	209
MvnI	CGCG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	5 cut(s)	10, 63, 240, 244, 304
NlaIII	CATG	2 cut(s)	156, 281
NlaIV	GGNNCC	2 cut(s)	25, 306
NruI	TCGCGA	1 cut(s)	239
PctI	GAATGC	1 cut(s)	209
PdmI	GAANNNNTTC	2 cut(s)	78, 209
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	103, 234
Ple19I	CGATCG	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	25, 306
PsuI	RGATCY	1 cut(s)	304
PvuI	CGATCG	1 cut(s)	243
RruI	TCGCGA	1 cut(s)	239
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	336
SatI	GCNGC	2 cut(s)	102, 233
Sau3AI	GATC	5 cut(s)	10, 63, 240, 244, 304
ScaI	AGTACT	1 cut(s)	274
SetI	ASST	5 cut(s)	127, 187, 237, 291, 357
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	152
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	228, 243
TasI	AATT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	101, 232
XmnI	GAANNNNTTC	2 cut(s)	78, 209
XspI	CTAG	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.