Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002266.1

Orthogroup ID

OG0017039

Physical Location & Seq

Genomic Coordinates Forward (+)

130903 .. 131634

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002266.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgaccagaattgttgcaccaaaaagagagcacaacaatgcgaatcaaagtggcccgagctcccaattgaaatcgcagagttcttggaagtatgctgcaaactcttacatcgctgcaccttattacaagccattgcctcaatctccatggctcgtgcttggtaatggtcaagaagacaacagttgccggttttttagtctcgaagagaaaaaggtctataccatcaagagcatattatttgaaggctgttgtgtgggctcatcacatgggtggctggtgattatgaacaaggattcaatcttaaatcttttcaatccagtttcaggtgaaagcattcaactctcagatattcgagctcttgatggcttttccagcttttctagtagtgaaatattgaaagctgtcctttcttcggagccgtctggccggaataattttttcttgacgatttacattagacaaacatcaagaagcatgaggtctgataaccttgcagtctataatcatggagacaaaacatggagtcccttgctagctagctctcgggagattgtattccacaacagcgaactattcgcattgttgggcaaaaatgcagttcaagtttgggactataagaaatcttgtggtgataggacaagtgtatatattttcagacggaaattacggaatcaatctttgactcgtacttacatggtgaaatactctcgcttagagcaagtgcacccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

243

Amino Acids

27.61

Weight (kDa)

9.55

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05011 FvH4_4g05012
rosa_chinensis	RchiOBHm_Chr4g0395901
rosa_laevigata	RLG00000003519
rosa_multiflora	Rmu_sc0001103.1_g000012 Rmu_sc0002266.1_g000025 Rmu_sc0007757.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253690
rosa_rugosa	Rorug07G0076900 Rorug07G0205800
rosa_samantha	Rh7BG337100 Rh7CG219100 Rh7DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	424
AfaI	GTAC	1 cut(s)	688
AfiI	CCNNNNNNNGG	2 cut(s)	323, 412
AgsI	TTSAA	7 cut(s)	70, 242, 297, 313, 338, 397, 602
AleI	CACNNNNGTG	1 cut(s)	268
AluBI	AGCT	6 cut(s)	60, 356, 375, 401, 536, 540
AluI	AGCT	6 cut(s)	60, 356, 375, 401, 536, 540
Alw21I	GWGCWC	4 cut(s)	33, 62, 358, 726
Alw26I	GTCTC	2 cut(s)	203, 504
Alw44I	GTGCAC	1 cut(s)	722
Ama87I	CYCGRG	2 cut(s)	55, 543
AoxI	GGCC	2 cut(s)	52, 424
ApaLI	GTGCAC	1 cut(s)	722
ApeKI	GCWGC	2 cut(s)	95, 113
Asp700I	GAANNNNTTC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	4 cut(s)	289, 338, 641, 709
AsuNHI	GCTAGC	2 cut(s)	532, 536
AvaI	CYCGRG	2 cut(s)	55, 543
BaeGI	GKGCMC	1 cut(s)	726
BanII	GRGCYC	3 cut(s)	62, 260, 358
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	4 cut(s)	33, 62, 358, 726
BbvI	GCAGC	2 cut(s)	82, 100
BccI	CCATC	2 cut(s)	230, 356
BceAI	ACGGC	1 cut(s)	403
BcoDI	GTCTC	2 cut(s)	203, 504
BfaI	CTAG	3 cut(s)	381, 533, 537
BisI	GCNGC	2 cut(s)	96, 114
BlsI	GCNGC	2 cut(s)	97, 115
BmeT110I	CYCGRG	2 cut(s)	55, 543
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	417
BmtI	GCTAGC	2 cut(s)	536, 540
BpiI	GAAGAC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 412
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	323, 412
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	726
BseXI	GCAGC	2 cut(s)	82, 100
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	54, 426
BsiHKAI	GWGCWC	4 cut(s)	33, 62, 358, 726
BsiHKCI	CYCGRG	2 cut(s)	55, 543
BsiSI	CCGG	2 cut(s)	187, 427
BslFI	GGGAC	2 cut(s)	510, 623
BslI	CCNNNNNNNGG	2 cut(s)	323, 412
BsmAI	GTCTC	2 cut(s)	203, 504
BsmFI	GGGAC	2 cut(s)	510, 623
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	2 cut(s)	54, 426
BsoBI	CYCGRG	2 cut(s)	55, 543
Bsp1286I	GDGCHC	5 cut(s)	33, 62, 260, 358, 726
Bsp19I	CCATGG	1 cut(s)	146
BspANI	GGCC	2 cut(s)	54, 426
BspCNI	CTCAG	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	417
BspOI	GCTAGC	2 cut(s)	536, 540
BsrDI	GCAATG	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	146
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	534, 538
BstDEI	CTNAG	2 cut(s)	343, 712
BstDSI	CCRYGG	1 cut(s)	146
BstMAI	GTCTC	2 cut(s)	203, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	726
BstV1I	GCAGC	2 cut(s)	82, 100
BstV2I	GAAGAC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	54, 426
BtgI	CCRYGG	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	534, 538
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	687
CviAII	CATG	6 cut(s)	147, 266, 475, 506, 519, 694
CviQI	GTAC	1 cut(s)	687
DdeI	CTNAG	2 cut(s)	343, 712
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Ecl136II	GAGCTC	2 cut(s)	60, 356
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	3 cut(s)	62, 260, 358
Eco53kI	GAGCTC	2 cut(s)	60, 356
Eco88I	CYCGRG	2 cut(s)	55, 543
EcoICRI	GAGCTC	2 cut(s)	60, 356
EcoT14I	CCWWGG	1 cut(s)	146
EcoT38I	GRGCYC	3 cut(s)	62, 260, 358
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	6 cut(s)	150, 269, 478, 509, 522, 697
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	2 cut(s)	510, 623
FatI	CATG	6 cut(s)	146, 265, 474, 505, 518, 693
Fnu4HI	GCNGC	2 cut(s)	96, 114
FriOI	GRGCYC	3 cut(s)	62, 260, 358
Fsp4HI	GCNGC	2 cut(s)	96, 114
FspBI	CTAG	3 cut(s)	381, 533, 537
GluI	GCNGC	2 cut(s)	96, 114
HaeIII	GGCC	2 cut(s)	54, 426
HapII	CCGG	2 cut(s)	187, 427
Hin1II	CATG	6 cut(s)	150, 269, 478, 509, 522, 697
HinfI	GANTC	5 cut(s)	43, 293, 523, 670, 682
HpaII	CCGG	2 cut(s)	187, 427
HphI	GGTGA	4 cut(s)	289, 338, 641, 709
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	4 cut(s)	346, 415, 484, 656
Hpy188III	TCNNGA	7 cut(s)	170, 200, 226, 359, 442, 468, 545
Hpy8I	GTNNAC	1 cut(s)	724
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	6 cut(s)	17, 98, 116, 494, 596, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	2 cut(s)	343, 712
Hsp92II	CATG	6 cut(s)	150, 269, 478, 509, 522, 697
LmnI	GCTCC	2 cut(s)	65, 415
LpnPI	CCDG	8 cut(s)	19, 200, 260, 309, 330, 385, 408, 440
Lsp1109I	GCAGC	2 cut(s)	82, 100
MaeI	CTAG	3 cut(s)	381, 533, 537
MboII	GAAGA	3 cut(s)	185, 215, 402
MfeI	CAATTG	1 cut(s)	65
MhlI	GDGCHC	5 cut(s)	33, 62, 260, 358, 726
MluCI	AATT	4 cut(s)	9, 65, 433, 662
MlyI	GAGTC	2 cut(s)	532, 676
MnlI	CCTC	2 cut(s)	147, 471
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	2 cut(s)	36, 268
MspI	CCGG	2 cut(s)	187, 427
MunI	CAATTG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	372
NcoI	CCATGG	1 cut(s)	146
NheI	GCTAGC	2 cut(s)	532, 536
NlaIII	CATG	6 cut(s)	150, 269, 478, 509, 522, 697
NlaIV	GGNNCC	1 cut(s)	417
OliI	CACNNNNGTG	1 cut(s)	268
PctI	GAATGC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	43, 293, 670
PkrI	GCNGC	2 cut(s)	97, 115
PleI	GAGTC	2 cut(s)	531, 676
PpsI	GAGTC	2 cut(s)	531, 676
Psp124BI	GAGCTC	2 cut(s)	62, 358
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	688
RsaNI	GTAC	1 cut(s)	687
RseI	CAYNNNNRTG	2 cut(s)	36, 268
SacI	GAGCTC	2 cut(s)	62, 358
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	96, 114
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	532, 676
SduI	GDGCHC	5 cut(s)	33, 62, 260, 358, 726
SmiMI	CAYNNNNRTG	2 cut(s)	36, 268
Sse9I	AATT	4 cut(s)	9, 65, 433, 662
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	3 cut(s)	381, 533, 537
SstI	GAGCTC	2 cut(s)	62, 358
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	182
TaqI	TCGA	2 cut(s)	201, 352
TasI	AATT	4 cut(s)	9, 65, 433, 662
TfiI	GAWTC	3 cut(s)	43, 293, 670
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseI	GCWGC	2 cut(s)	95, 113
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	2 cut(s)	673, 682
VneI	GTGCAC	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	3 cut(s)	381, 533, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.