Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017039

Physical Location & Seq

Genomic Coordinates Reverse (-)

49564873 .. 49566026

Gene Structure 1154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGACAATGGCCGATGATCAGAATTGCTGCACCAAAAAGAGAGCACAGCAATGCGAATCAAAGTGGTCCGAGCTCCCAATTGAAATCGCAGATTTGATCTTGGAAAAGCTTGCGTCCATTGACATCCTTCGCTTTAAAGCAGTTTGTTCTTCTTGGAAGTATGCTGCAAACTCTTACATCACTGCACCTTATTACAAGCCATTGCCTCAATCTCCATGGCTCGTGCTTGGTGAAAGCATTCAACTCTCAGATATTCGAGCTCTTGATGGCTTTTCCAGCTTTTCTAGTAGTGAAATATTGAAAGCTGTCCTTTCTTCGGAGCCGTCTGCCCGGAATAAGTTTTTCTTGACTATTTGCATTAGACAAACATCAAGAAGTAGGAGGTTTGATAAACTTGCAGTCTATAATCATGAAGACAAAACATGGAGTCCCTTGCTCGTTAACCCTAGCTCTCGGGAGATTGTATTCCTCAACGGCAAACTATTCGCATTTCAATACTCTCGCTTCGTGGAGTCATTGGGTGAGATTTTGCGTGTGACGCTGGTTTTGGTCAAGAGCTTGGATGATAGTTCCCACAAAGAATCGTATTTTGAGGTCTATAAGATGAATTTGAGGCCTATAAGAAGTCGAGCTACGTGGGAGAAAGTGGAAAGTTTAGGTCATAGATTTATAATTTGGTGCCGAAATCGACCTTCGATAGCATTATCCGCCTCATATTTTACAGAATTTGAAGAAAACTCGATTTACTGTTATCATCGTCGTCGTTACGTTTTCGTGTACGACTTAAAAGATAAAGTTGTGAAGCCATGTTACAAATTTGATGAGTCCACAACGGATCAAGAACCGTTCTGGATTGTTCCCAATCTATCCCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

293

Amino Acids

34.1

Weight (kDa)

8.89

Isoelectric Point (pI)

59.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	22 - 58	2.9e-06	F-box domain
Beta-prop_KIB1-4	PF03478	168 - 261	2.8e-12	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05011 FvH4_4g05012
rosa_chinensis	RchiOBHm_Chr4g0395901
rosa_laevigata	RLG00000003519
rosa_multiflora	Rmu_sc0001103.1_g000012 Rmu_sc0002266.1_g000025 Rmu_sc0007757.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253690
rosa_rugosa	Rorug07G0076900 Rorug07G0205800
rosa_samantha	Rh7BG337100 Rh7CG219100 Rh7DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	678
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	1 cut(s)	843
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	3 cut(s)	607, 725, 815
AfaI	GTAC	1 cut(s)	779
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	5 cut(s)	83, 242, 301, 494, 731
AluBI	AGCT	8 cut(s)	73, 109, 260, 279, 305, 450, 558, 632
AluI	AGCT	8 cut(s)	73, 109, 260, 279, 305, 450, 558, 632
Alw21I	GWGCWC	3 cut(s)	46, 75, 262
AlwI	GGATC	1 cut(s)	843
Ama87I	CYCGRG	1 cut(s)	453
AoxI	GGCC	2 cut(s)	9, 614
ApeKI	GCWGC	2 cut(s)	27, 164
ApoI	RAATTY	3 cut(s)	607, 725, 815
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
Asp700I	GAANNNNTTC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	242, 533
AvaI	CYCGRG	1 cut(s)	453
AvaII	GGWCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	678
BanII	GRGCYC	2 cut(s)	75, 262
BarI	GAAGNNNNNNTAC	4 cut(s)	616, 648, 794, 826
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	3 cut(s)	46, 75, 262
BbvI	GCAGC	2 cut(s)	14, 151
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	2 cut(s)	307, 490
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	331
BfaI	CTAG	2 cut(s)	285, 447
BisI	GCNGC	2 cut(s)	28, 165
BlsI	GCNGC	2 cut(s)	29, 166
Bme1390I	CCNGG	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	321, 680
BmrFI	CCNGG	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	331
BsaAI	YACGTR	1 cut(s)	636
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse3DI	GCAATG	2 cut(s)	56, 200
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	2 cut(s)	123, 568
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	2 cut(s)	56, 200
BseMII	CTCAG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	14, 151
BsgI	GTGCAG	2 cut(s)	13, 168
BshFI	GGCC	2 cut(s)	11, 616
BshNI	GGYRCC	1 cut(s)	678
BsiHKAI	GWGCWC	3 cut(s)	46, 75, 262
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	414
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	11, 616
BsoBI	CYCGRG	1 cut(s)	453
Bsp1286I	GDGCHC	3 cut(s)	46, 75, 262
Bsp143I	GATC	3 cut(s)	16, 96, 835
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	1 cut(s)	708
BspANI	GGCC	2 cut(s)	11, 616
BspCNI	CTCAG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	321, 680
BspPI	GGATC	1 cut(s)	843
BspT107I	GGYRCC	1 cut(s)	678
BsrDI	GCAATG	2 cut(s)	56, 200
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	3 cut(s)	16, 96, 835
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	749, 846
BstBAI	YACGTR	1 cut(s)	636
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	247
BstDSI	CCRYGG	1 cut(s)	215
BstF5I	GGATG	2 cut(s)	123, 568
BstKTI	GATC	3 cut(s)	19, 99, 838
BstMBI	GATC	3 cut(s)	16, 96, 835
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 538, 707
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	14, 151
BstV2I	GAAGAC	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	11, 616
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	123, 568
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	111
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	2 cut(s)	102, 547
Csp6I	GTAC	1 cut(s)	778
CviAII	CATG	4 cut(s)	216, 410, 423, 807
CviQI	GTAC	1 cut(s)	778
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	3 cut(s)	18, 98, 837
DpnII	GATC	3 cut(s)	16, 96, 835
DraI	TTTAAA	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	697
Ecl136II	GAGCTC	2 cut(s)	73, 260
Eco130I	CCWWGG	1 cut(s)	215
Eco147I	AGGCCT	1 cut(s)	616
Eco24I	GRGCYC	2 cut(s)	75, 262
Eco47I	GGWCC	1 cut(s)	66
Eco53kI	GAGCTC	2 cut(s)	73, 260
Eco88I	CYCGRG	1 cut(s)	453
EcoICRI	GAGCTC	2 cut(s)	73, 260
EcoT14I	CCWWGG	1 cut(s)	215
EcoT38I	GRGCYC	2 cut(s)	75, 262
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	4 cut(s)	219, 413, 426, 810
FalI	AAGNNNNNCTT	4 cut(s)	294, 326, 329, 361
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	4 cut(s)	215, 409, 422, 806
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	28, 165
FokI	GGATG	2 cut(s)	110, 575
FriOI	GRGCYC	2 cut(s)	75, 262
Fsp4HI	GCNGC	2 cut(s)	28, 165
FspBI	CTAG	2 cut(s)	285, 447
GluI	GCNGC	2 cut(s)	28, 165
HaeIII	GGCC	2 cut(s)	11, 616
HapII	CCGG	1 cut(s)	331
HgaI	GACGC	2 cut(s)	102, 547
Hin1II	CATG	4 cut(s)	219, 413, 426, 810
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	5 cut(s)	56, 427, 512, 581, 824
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	2 cut(s)	242, 533
Hpy166II	GTNNAC	3 cut(s)	442, 778, 828
Hpy188I	TCNGA	4 cut(s)	21, 70, 250, 319
Hpy188III	TCNNGA	8 cut(s)	263, 346, 372, 410, 455, 553, 839, 850
Hpy8I	GTNNAC	3 cut(s)	442, 778, 828
Hpy99I	CGWCG	2 cut(s)	762, 765
HpyAV	CCTTC	2 cut(s)	137, 702
HpyCH4III	ACNGT	2 cut(s)	749, 846
HpyCH4IV	ACGT	2 cut(s)	635, 768
HpyCH4V	TGCA	5 cut(s)	30, 167, 185, 357, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 538, 707
HpyF3I	CTNAG	1 cut(s)	247
HpySE526I	ACGT	2 cut(s)	635, 768
Hsp92II	CATG	4 cut(s)	219, 413, 426, 810
Ksp22I	TGATCA	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	3 cut(s)	16, 96, 835
LmnI	GCTCC	2 cut(s)	78, 319
LpnPI	CCDG	4 cut(s)	289, 344, 527, 835
Lsp1109I	GCAGC	2 cut(s)	14, 151
MaeI	CTAG	2 cut(s)	285, 447
MaeII	ACGT	2 cut(s)	635, 768
MaeIII	GTNAC	3 cut(s)	535, 764, 809
MalI	GATC	3 cut(s)	18, 98, 837
MboI	GATC	3 cut(s)	16, 96, 835
MboII	GAAGA	4 cut(s)	141, 306, 425, 743
MfeI	CAATTG	1 cut(s)	78
MhlI	GDGCHC	3 cut(s)	46, 75, 262
MluCI	AATT	6 cut(s)	22, 78, 607, 672, 725, 815
MlyI	GAGTC	3 cut(s)	436, 521, 833
MnlI	CCTC	6 cut(s)	216, 375, 479, 586, 606, 721
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	3 cut(s)	135, 441, 785
MslI	CAYNNNNRTG	1 cut(s)	49
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	1 cut(s)	331
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	276, 538, 707
NciI	CCSGG	1 cut(s)	331
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	3 cut(s)	16, 96, 835
NlaIII	CATG	4 cut(s)	219, 413, 426, 810
NlaIV	GGNNCC	2 cut(s)	321, 680
NmuCI	GTSAC	1 cut(s)	535
PagI	TCATGA	1 cut(s)	409
PceI	AGGCCT	1 cut(s)	616
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	56, 581
PkrI	GCNGC	2 cut(s)	29, 166
PleI	GAGTC	3 cut(s)	435, 520, 832
PpsI	GAGTC	3 cut(s)	435, 520, 832
Ppu21I	YACGTR	1 cut(s)	636
PsiI	TTATAA	1 cut(s)	671
Psp124BI	GAGCTC	2 cut(s)	75, 262
PspN4I	GGNNCC	2 cut(s)	321, 680
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	779
RsaNI	GTAC	1 cut(s)	778
RseI	CAYNNNNRTG	1 cut(s)	49
SacI	GAGCTC	2 cut(s)	75, 262
SaqAI	TTAA	3 cut(s)	135, 441, 785
SatI	GCNGC	2 cut(s)	28, 165
Sau3AI	GATC	3 cut(s)	16, 96, 835
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	3 cut(s)	436, 521, 833
ScrFI	CCNGG	1 cut(s)	331
SduI	GDGCHC	3 cut(s)	46, 75, 262
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	6 cut(s)	22, 78, 607, 672, 725, 815
SseBI	AGGCCT	1 cut(s)	616
SsiI	CCGC	1 cut(s)	708
SspI	AATATT	1 cut(s)	297
SspMI	CTAG	2 cut(s)	285, 447
SstI	GAGCTC	2 cut(s)	75, 262
StuI	AGGCCT	1 cut(s)	616
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	749, 846
TaiI	ACGT	2 cut(s)	638, 771
TaqI	TCGA	5 cut(s)	256, 628, 688, 695, 740
TasI	AATT	6 cut(s)	22, 78, 607, 672, 725, 815
TfiI	GAWTC	2 cut(s)	56, 581
Tru1I	TTAA	3 cut(s)	135, 441, 785
Tru9I	TTAA	3 cut(s)	135, 441, 785
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	2 cut(s)	27, 164
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	2 cut(s)	426, 620
TspGWI	ACGGA	1 cut(s)	848
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	3 cut(s)	607, 725, 815
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	2 cut(s)	285, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.