Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017039

Physical Location & Seq

Genomic Coordinates Forward (+)

11928269 .. 11929414

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36831

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCCGATGATCAGAATTGTTGCACCAAAAAGAGATCACAACAATGCGAATCAAAGTGGTCCGAGCTCCCAATTGAAATCGCAGAGTTGATCTTGGAAAAGCTTGCGTCCATTGACATCCTTCGCTTCAAAGCAGTTTGTTCTTCTTGGAAGTATGCTGCAAACTCTTACATCGCTGCACCTTATTACAAGCCATTGCCTCAATCTCCATGGCTCGTGCTTGGTAATGGTCAAGAAGACAACAGTTGCCGGTTTTTCAGTCTCGAAGAGAAAAAGGTCTATACCATCAAGAACATATTATTTGAAGGCTGTTGTGTGGGCTCATCACATGGGTGGCTGGTGATTATGAACAAGGATTCAATCTTAAATCTTTTCAATCCAGTTTCAGGTGAAAGCATTCAACTCTCAGATATTCGAGCTCTTGATGGCTTTTCCAGCTTTTCTAGTAGTGAAATATTGAAAGCTGTCCTTTCTTCGGAGCCGTCTGGCCTGAATAATTTTTTCTTGACGATTTGCATTAGACAAACATCAAGAAGCATGGGGTCTGATAACCTTGCAGTCTATAATCATGGAGACAAAACATGGAGTCCCTTGCTAGCTAGCTCTCGGGAGATTGTATTCCACAACAGCAAACTATTCGCATTGTTGGGCAAATATGCAGTTCAAGTTTGGGACTTCAAGAAATCTTGTGGTGATAGGACTACTGTATATATTTTCAGACGGAAATTACGGAATCAATCTTTGACTCGTACTTACATGGTGAAATACTCTCGCTTAGTGGAGTCATTGGGTGAGATTTTGCGTGTGACGCTGGTTTTGGTCAATAGCTTGGATGATAGTTCCCACAAAGAATCGTATTTTGAGGTCTATAAGATGAATTTGAGGCCTACAACAAGTCGAGGCACGTGGGAGAAAGTGGAAAGTTTAGGTCACAGATTTATAATTTGGTGTCGAAATCGAGCTTCGATAGCATTATCCGCCTCATATTTTACAGAATTTGAAGAAAACTCGATTTACTGTTATCATCGTCGTCGCATTTTCGTTTGCAACTTAAAAGATAAAGTTGTGAAGCCATGTTACAGATTTGACAAGTCCACAACGTATAAAGAACCTTTCTGGATTGTTCCCAATCTATCCCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

381

Amino Acids

43.89

Weight (kDa)

9.08

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	20 - 56	1.1e-06	F-box domain
Beta-prop_KIB1-4	PF03478	85 - 342	2.9e-36	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05011 FvH4_4g05012
rosa_chinensis	RchiOBHm_Chr4g0395901
rosa_laevigata	RLG00000003519
rosa_multiflora	Rmu_sc0001103.1_g000012 Rmu_sc0002266.1_g000025 Rmu_sc0007757.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253690
rosa_rugosa	Rorug07G0076900 Rorug07G0205800
rosa_samantha	Rh7BG337100 Rh7CG219100 Rh7DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	941
AciI	CCGC	1 cut(s)	978
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	877, 995
AcvI	CACGTG	1 cut(s)	906
AfaI	GTAC	1 cut(s)	751
AfiI	CCNNNNNNNGG	2 cut(s)	386, 475
AleI	CACNNNNGTG	1 cut(s)	331
AluBI	AGCT	9 cut(s)	67, 103, 419, 438, 464, 599, 603, 828, 962
AluI	AGCT	9 cut(s)	67, 103, 419, 438, 464, 599, 603, 828, 962
Alw21I	GWGCWC	2 cut(s)	69, 421
Alw26I	GTCTC	2 cut(s)	266, 567
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	3 cut(s)	3, 487, 884
ApeKI	GCWGC	2 cut(s)	158, 176
ApoI	RAATTY	2 cut(s)	877, 995
ArsI	GACNNNNNNTTYG	2 cut(s)	799, 831
Asp700I	GAANNNNTTC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	5 cut(s)	352, 401, 704, 772, 803
AsuNHI	GCTAGC	2 cut(s)	595, 599
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	60
BanII	GRGCYC	3 cut(s)	69, 323, 421
BarI	GAAGNNNNNNTAC	2 cut(s)	1061, 1093
BauI	CACGAG	1 cut(s)	215
BbrPI	CACGTG	1 cut(s)	906
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	69, 421
BbvI	GCAGC	2 cut(s)	145, 163
BccI	CCATC	2 cut(s)	293, 419
BceAI	ACGGC	1 cut(s)	466
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	266, 567
BfaI	CTAG	3 cut(s)	444, 596, 600
BisI	GCNGC	2 cut(s)	159, 177
BlsI	GCNGC	2 cut(s)	160, 178
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	480
BmtI	GCTAGC	2 cut(s)	599, 603
BpiI	GAAGAC	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	906
BsaJI	CCNNGG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 475
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	2 cut(s)	117, 838
BseLI	CCNNNNNNNGG	2 cut(s)	386, 475
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	145, 163
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	5, 489, 886
BsiHKAI	GWGCWC	2 cut(s)	69, 421
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	2 cut(s)	573, 686
BslI	CCNNNNNNNGG	2 cut(s)	386, 475
BsmAI	GTCTC	2 cut(s)	266, 567
BsmFI	GGGAC	2 cut(s)	573, 686
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	3 cut(s)	5, 489, 886
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	3 cut(s)	69, 323, 421
Bsp143I	GATC	3 cut(s)	10, 35, 90
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	1 cut(s)	978
BspANI	GGCC	3 cut(s)	5, 489, 886
BspCNI	CTCAG	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	480
BspOI	GCTAGC	2 cut(s)	599, 603
BsrDI	GCAATG	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	3 cut(s)	10, 35, 90
BssSI	CACGAG	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	215
Bst4CI	ACNGT	3 cut(s)	245, 706, 1019
Bst6I	CTCTTC	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	906
BstC8I	GCNNGC	3 cut(s)	105, 597, 601
BstDEI	CTNAG	2 cut(s)	406, 775
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	117, 838
BstKTI	GATC	3 cut(s)	13, 38, 93
BstMAI	GTCTC	2 cut(s)	266, 567
BstMBI	GATC	3 cut(s)	10, 35, 90
BstMWI	GCNNNNNNNGC	4 cut(s)	435, 808, 968, 977
BstV1I	GCAGC	2 cut(s)	145, 163
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	5, 489, 886
BtgI	CCRYGG	1 cut(s)	209
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	117, 838
Cac8I	GCNNGC	3 cut(s)	105, 597, 601
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	2 cut(s)	96, 817
Csp6I	GTAC	1 cut(s)	750
CviAII	CATG	7 cut(s)	210, 329, 538, 569, 582, 757, 1074
CviQI	GTAC	1 cut(s)	750
DdeI	CTNAG	2 cut(s)	406, 775
DpnI	GATC	3 cut(s)	12, 37, 92
DpnII	GATC	3 cut(s)	10, 35, 90
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	967
Ecl136II	GAGCTC	2 cut(s)	67, 419
Eco130I	CCWWGG	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	886
Eco24I	GRGCYC	3 cut(s)	69, 323, 421
Eco47I	GGWCC	1 cut(s)	60
Eco53kI	GAGCTC	2 cut(s)	67, 419
Eco72I	CACGTG	1 cut(s)	906
Eco88I	CYCGRG	1 cut(s)	606
EcoICRI	GAGCTC	2 cut(s)	67, 419
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	3 cut(s)	69, 323, 421
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	7 cut(s)	213, 332, 541, 572, 585, 760, 1077
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	2 cut(s)	573, 686
FatI	CATG	7 cut(s)	209, 328, 537, 568, 581, 756, 1073
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	159, 177
FokI	GGATG	2 cut(s)	104, 845
FriOI	GRGCYC	3 cut(s)	69, 323, 421
Fsp4HI	GCNGC	2 cut(s)	159, 177
FspBI	CTAG	3 cut(s)	444, 596, 600
GluI	GCNGC	2 cut(s)	159, 177
HaeIII	GGCC	3 cut(s)	5, 489, 886
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	2 cut(s)	96, 817
Hin1II	CATG	7 cut(s)	213, 332, 541, 572, 585, 760, 1077
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	7 cut(s)	50, 356, 586, 733, 745, 782, 851
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	5 cut(s)	352, 401, 704, 772, 803
Hpy166II	GTNNAC	1 cut(s)	1095
Hpy188I	TCNGA	6 cut(s)	15, 64, 409, 478, 547, 719
Hpy188III	TCNNGA	9 cut(s)	233, 263, 289, 422, 505, 531, 608, 679, 1117
Hpy8I	GTNNAC	1 cut(s)	1095
Hpy99I	CGWCG	2 cut(s)	1032, 1035
HpyAV	CCTTC	2 cut(s)	131, 299
HpyCH4III	ACNGT	3 cut(s)	245, 706, 1019
HpyCH4IV	ACGT	2 cut(s)	905, 1100
HpyCH4V	TGCA	7 cut(s)	24, 161, 179, 516, 557, 659, 1047
HpyF10VI	GCNNNNNNNGC	4 cut(s)	435, 808, 968, 977
HpyF3I	CTNAG	2 cut(s)	406, 775
HpySE526I	ACGT	2 cut(s)	905, 1100
Hsp92II	CATG	7 cut(s)	213, 332, 541, 572, 585, 760, 1077
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	10, 35, 90
LmnI	GCTCC	2 cut(s)	72, 478
LpnPI	CCDG	9 cut(s)	263, 323, 372, 393, 448, 471, 503, 797, 1102
Lsp1109I	GCAGC	2 cut(s)	145, 163
MaeI	CTAG	3 cut(s)	444, 596, 600
MaeII	ACGT	2 cut(s)	905, 1100
MaeIII	GTNAC	3 cut(s)	805, 929, 1076
MalI	GATC	3 cut(s)	12, 37, 92
MboI	GATC	3 cut(s)	10, 35, 90
MboII	GAAGA	5 cut(s)	135, 248, 278, 465, 1013
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	3 cut(s)	69, 323, 421
MluCI	AATT	7 cut(s)	16, 72, 496, 725, 877, 942, 995
MlyI	GAGTC	3 cut(s)	595, 739, 791
MnlI	CCTC	5 cut(s)	210, 856, 876, 893, 991
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	2 cut(s)	365, 1052
MslI	CAYNNNNRTG	2 cut(s)	43, 331
MspI	CCGG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	396
MwoI	GCNNNNNNNGC	4 cut(s)	435, 808, 968, 977
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	3 cut(s)	10, 35, 90
NheI	GCTAGC	2 cut(s)	595, 599
NlaIII	CATG	7 cut(s)	213, 332, 541, 572, 585, 760, 1077
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	805, 929
OliI	CACNNNNGTG	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	886
PctI	GAATGC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	4 cut(s)	50, 356, 733, 851
PkrI	GCNGC	2 cut(s)	160, 178
PleI	GAGTC	3 cut(s)	594, 739, 790
PmaCI	CACGTG	1 cut(s)	906
PmlI	CACGTG	1 cut(s)	906
PpsI	GAGTC	3 cut(s)	594, 739, 790
Ppu21I	YACGTR	1 cut(s)	906
PsiI	TTATAA	1 cut(s)	941
Psp124BI	GAGCTC	2 cut(s)	69, 421
PspCI	CACGTG	1 cut(s)	906
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	751
RsaNI	GTAC	1 cut(s)	750
RseI	CAYNNNNRTG	2 cut(s)	43, 331
SacI	GAGCTC	2 cut(s)	69, 421
SaqAI	TTAA	2 cut(s)	365, 1052
SatI	GCNGC	2 cut(s)	159, 177
Sau3AI	GATC	3 cut(s)	10, 35, 90
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	3 cut(s)	595, 739, 791
SduI	GDGCHC	3 cut(s)	69, 323, 421
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	2 cut(s)	43, 331
Sse9I	AATT	7 cut(s)	16, 72, 496, 725, 877, 942, 995
SseBI	AGGCCT	1 cut(s)	886
SsiI	CCGC	1 cut(s)	978
SspI	AATATT	1 cut(s)	456
SspMI	CTAG	3 cut(s)	444, 596, 600
SstI	GAGCTC	2 cut(s)	69, 421
StuI	AGGCCT	1 cut(s)	886
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	3 cut(s)	245, 706, 1019
TaiI	ACGT	2 cut(s)	908, 1103
TaqI	TCGA	7 cut(s)	264, 415, 898, 952, 958, 965, 1010
TasI	AATT	7 cut(s)	16, 72, 496, 725, 877, 942, 995
TfiI	GAWTC	4 cut(s)	50, 356, 733, 851
Tru1I	TTAA	2 cut(s)	365, 1052
Tru9I	TTAA	2 cut(s)	365, 1052
TseFI	GTSAC	2 cut(s)	805, 929
TseI	GCWGC	2 cut(s)	158, 176
Tsp45I	GTSAC	2 cut(s)	805, 929
TspDTI	ATGAA	2 cut(s)	362, 890
TspGWI	ACGGA	2 cut(s)	736, 745
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	2 cut(s)	877, 995
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	3 cut(s)	444, 596, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.