Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001103.1

Orthogroup ID

OG0017039

Physical Location & Seq

Genomic Coordinates Reverse (-)

69947 .. 71092

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001103.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atggccgatgatcagaattgctgcaccaaaaagagagcacaacaatgcgaatcaaagtggtccgagctcccaattgaaatcgcagagttgatcttggaaaagcttgcgtccattgacatccttcgcttcaaagcagtttgttcttcttggaagtatgctgcaaactcttacatcgctgcaccttattacaagccattgcctcaatctccatggctcgtgcttggtaatggtcaagaagacaacagttgccggttttttagtctcgaagagaaaaaggtctataccatcaagagcatattatttgaaggctgttgtgtgggctcatcacatgggtggctggtgattatgaacaaggattcaatcttaaatcttttcaatccagtttcaggtgaaagcattcaactctcagatattcgagctcttgatggcttttccagcttttctggtagtgaaatattgaaagctgtcctttcttcggagccgtctggccggaataattttttcttgacgatttgcattagacaaacatcaagaagcatgaggtctgataaccttgcagtctataatcatggagacaaaacatggagtcccttgctaggtagctctcgggagattgtattccacaacagcaaactattcgcattgttgggcaaaaatgcagttcaagtttgggactataagaaatcttgtggtgataggacaagtgtatatattttcagacggaaattacggaatcaatctttgactcgtacttacatggtgaaatactctcgcttagtggagtcattgggtgagattttgcgtgtgacgctggttttggtcaatagcttggatgatagttcccacaaagaatcgtattttgaggtctataagatgaatttgaggcctacaacaagtcgaggcacgtgggagaaagtggaaagtttaggtcacagatttataatttggtgtcgaaatcgagcttcgatagcattatccgcctcatattttacagaatttgaagaaaactcgatttactgttatcatcgtcgtcgcattttcgtttacaacttaaaagataaagttgtgaagccatgttacagatttgacgagtccacaacgtatcaagaacctttctggattgttcccaatctatccctgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

381

Amino Acids

43.96

Weight (kDa)

9.06

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05011 FvH4_4g05012
rosa_chinensis	RchiOBHm_Chr4g0395901
rosa_laevigata	RLG00000003519
rosa_multiflora	Rmu_sc0001103.1_g000012 Rmu_sc0002266.1_g000025 Rmu_sc0007757.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253690
rosa_rugosa	Rorug07G0076900 Rorug07G0205800
rosa_samantha	Rh7BG337100 Rh7CG219100 Rh7DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	941
AciI	CCGC	1 cut(s)	978
AcoI	YGGCCR	2 cut(s)	3, 487
AcsI	RAATTY	2 cut(s)	877, 995
AcvI	CACGTG	1 cut(s)	906
AfaI	GTAC	1 cut(s)	751
AfiI	CCNNNNNNNGG	3 cut(s)	386, 475, 596
AgsI	TTSAA	9 cut(s)	77, 130, 305, 360, 376, 401, 460, 665, 1001
AleI	CACNNNNGTG	1 cut(s)	331
AluBI	AGCT	8 cut(s)	67, 103, 419, 438, 464, 603, 828, 962
AluI	AGCT	8 cut(s)	67, 103, 419, 438, 464, 603, 828, 962
Alw21I	GWGCWC	3 cut(s)	40, 69, 421
Alw26I	GTCTC	2 cut(s)	266, 567
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	3 cut(s)	3, 487, 884
ApeKI	GCWGC	3 cut(s)	21, 158, 176
ApoI	RAATTY	2 cut(s)	877, 995
ArsI	GACNNNNNNTTYG	2 cut(s)	799, 831
Asp700I	GAANNNNTTC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	5 cut(s)	352, 401, 704, 772, 803
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	60
BanII	GRGCYC	3 cut(s)	69, 323, 421
BarI	GAAGNNNNNNTAC	2 cut(s)	1061, 1093
BauI	CACGAG	1 cut(s)	215
BbrPI	CACGTG	1 cut(s)	906
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	3 cut(s)	40, 69, 421
BbvI	GCAGC	3 cut(s)	8, 145, 163
BccI	CCATC	2 cut(s)	293, 419
BceAI	ACGGC	1 cut(s)	466
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	266, 567
BfaI	CTAG	1 cut(s)	596
BisI	GCNGC	3 cut(s)	22, 159, 177
BlsI	GCNGC	3 cut(s)	23, 160, 178
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	906
BsaJI	CCNNGG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 475, 596
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	2 cut(s)	117, 838
BseLI	CCNNNNNNNGG	3 cut(s)	386, 475, 596
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	380
BseXI	GCAGC	3 cut(s)	8, 145, 163
BsgI	GTGCAG	2 cut(s)	7, 162
BshFI	GGCC	3 cut(s)	5, 489, 886
BsiHKAI	GWGCWC	3 cut(s)	40, 69, 421
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	250, 490
BslFI	GGGAC	2 cut(s)	573, 686
BslI	CCNNNNNNNGG	3 cut(s)	386, 475, 596
BsmAI	GTCTC	2 cut(s)	266, 567
BsmFI	GGGAC	2 cut(s)	573, 686
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	3 cut(s)	5, 489, 886
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	4 cut(s)	40, 69, 323, 421
Bsp143I	GATC	2 cut(s)	10, 90
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	1 cut(s)	978
BspANI	GGCC	3 cut(s)	5, 489, 886
BspCNI	CTCAG	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	10, 90
BssSI	CACGAG	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	245, 1019
Bst6I	CTCTTC	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	906
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	406, 775
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	117, 838
BstKTI	GATC	2 cut(s)	13, 93
BstMAI	GTCTC	2 cut(s)	266, 567
BstMBI	GATC	2 cut(s)	10, 90
BstMWI	GCNNNNNNNGC	4 cut(s)	435, 808, 968, 977
BstV1I	GCAGC	3 cut(s)	8, 145, 163
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	5, 489, 886
BtgI	CCRYGG	1 cut(s)	209
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	117, 838
Cac8I	GCNNGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	2 cut(s)	96, 817
Csp6I	GTAC	1 cut(s)	750
CviAII	CATG	7 cut(s)	210, 329, 538, 569, 582, 757, 1074
CviQI	GTAC	1 cut(s)	750
DdeI	CTNAG	2 cut(s)	406, 775
DpnI	GATC	2 cut(s)	12, 92
DpnII	GATC	2 cut(s)	10, 90
EaeI	YGGCCR	2 cut(s)	3, 487
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	967
Ecl136II	GAGCTC	2 cut(s)	67, 419
Eco130I	CCWWGG	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	886
Eco24I	GRGCYC	3 cut(s)	69, 323, 421
Eco47I	GGWCC	1 cut(s)	60
Eco53kI	GAGCTC	2 cut(s)	67, 419
Eco72I	CACGTG	1 cut(s)	906
Eco88I	CYCGRG	1 cut(s)	606
EcoICRI	GAGCTC	2 cut(s)	67, 419
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	3 cut(s)	69, 323, 421
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	7 cut(s)	213, 332, 541, 572, 585, 760, 1077
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	2 cut(s)	573, 686
FatI	CATG	7 cut(s)	209, 328, 537, 568, 581, 756, 1073
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	3 cut(s)	22, 159, 177
FokI	GGATG	2 cut(s)	104, 845
FriOI	GRGCYC	3 cut(s)	69, 323, 421
Fsp4HI	GCNGC	3 cut(s)	22, 159, 177
FspBI	CTAG	1 cut(s)	596
GluI	GCNGC	3 cut(s)	22, 159, 177
HaeIII	GGCC	3 cut(s)	5, 489, 886
HapII	CCGG	2 cut(s)	250, 490
HgaI	GACGC	2 cut(s)	96, 817
Hin1II	CATG	7 cut(s)	213, 332, 541, 572, 585, 760, 1077
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	8 cut(s)	50, 356, 586, 733, 745, 782, 851, 1091
HpaII	CCGG	2 cut(s)	250, 490
HphI	GGTGA	5 cut(s)	352, 401, 704, 772, 803
Hpy166II	GTNNAC	2 cut(s)	1045, 1095
Hpy188I	TCNGA	6 cut(s)	15, 64, 409, 478, 547, 719
Hpy188III	TCNNGA	9 cut(s)	233, 263, 289, 422, 505, 531, 608, 1106, 1117
Hpy8I	GTNNAC	2 cut(s)	1045, 1095
Hpy99I	CGWCG	2 cut(s)	1032, 1035
HpyAV	CCTTC	2 cut(s)	131, 299
HpyCH4III	ACNGT	2 cut(s)	245, 1019
HpyCH4IV	ACGT	2 cut(s)	905, 1100
HpyCH4V	TGCA	6 cut(s)	24, 161, 179, 516, 557, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	435, 808, 968, 977
HpyF3I	CTNAG	2 cut(s)	406, 775
HpySE526I	ACGT	2 cut(s)	905, 1100
Hsp92II	CATG	7 cut(s)	213, 332, 541, 572, 585, 760, 1077
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	10, 90
LmnI	GCTCC	2 cut(s)	72, 478
Lsp1109I	GCAGC	3 cut(s)	8, 145, 163
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	2 cut(s)	905, 1100
MaeIII	GTNAC	3 cut(s)	805, 929, 1076
MalI	GATC	2 cut(s)	12, 92
MboI	GATC	2 cut(s)	10, 90
MboII	GAAGA	5 cut(s)	135, 248, 278, 465, 1013
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	4 cut(s)	40, 69, 323, 421
MluCI	AATT	7 cut(s)	16, 72, 496, 725, 877, 942, 995
MlyI	GAGTC	4 cut(s)	595, 739, 791, 1100
MnlI	CCTC	6 cut(s)	210, 534, 856, 876, 893, 991
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	2 cut(s)	365, 1052
MslI	CAYNNNNRTG	2 cut(s)	43, 331
MspI	CCGG	2 cut(s)	250, 490
MunI	CAATTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	396
MwoI	GCNNNNNNNGC	4 cut(s)	435, 808, 968, 977
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	10, 90
NlaIII	CATG	7 cut(s)	213, 332, 541, 572, 585, 760, 1077
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	805, 929
OliI	CACNNNNGTG	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	886
PctI	GAATGC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	4 cut(s)	50, 356, 733, 851
PkrI	GCNGC	3 cut(s)	23, 160, 178
PleI	GAGTC	4 cut(s)	594, 739, 790, 1099
PmaCI	CACGTG	1 cut(s)	906
PmlI	CACGTG	1 cut(s)	906
PpsI	GAGTC	4 cut(s)	594, 739, 790, 1099
Ppu21I	YACGTR	1 cut(s)	906
PsiI	TTATAA	1 cut(s)	941
Psp124BI	GAGCTC	2 cut(s)	69, 421
PspCI	CACGTG	1 cut(s)	906
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	751
RsaNI	GTAC	1 cut(s)	750
RseI	CAYNNNNRTG	2 cut(s)	43, 331
SacI	GAGCTC	2 cut(s)	69, 421
SaqAI	TTAA	2 cut(s)	365, 1052
SatI	GCNGC	3 cut(s)	22, 159, 177
Sau3AI	GATC	2 cut(s)	10, 90
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	4 cut(s)	595, 739, 791, 1100
SduI	GDGCHC	4 cut(s)	40, 69, 323, 421
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	2 cut(s)	43, 331
Sse9I	AATT	7 cut(s)	16, 72, 496, 725, 877, 942, 995
SseBI	AGGCCT	1 cut(s)	886
SsiI	CCGC	1 cut(s)	978
SspI	AATATT	1 cut(s)	456
SspMI	CTAG	1 cut(s)	596
SstI	GAGCTC	2 cut(s)	69, 421
StuI	AGGCCT	1 cut(s)	886
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	2 cut(s)	245, 1019
TaiI	ACGT	2 cut(s)	908, 1103
TaqI	TCGA	7 cut(s)	264, 415, 898, 952, 958, 965, 1010
TasI	AATT	7 cut(s)	16, 72, 496, 725, 877, 942, 995
TfiI	GAWTC	4 cut(s)	50, 356, 733, 851
Tru1I	TTAA	2 cut(s)	365, 1052
Tru9I	TTAA	2 cut(s)	365, 1052
TseFI	GTSAC	2 cut(s)	805, 929
TseI	GCWGC	3 cut(s)	21, 158, 176
Tsp45I	GTSAC	2 cut(s)	805, 929
TspDTI	ATGAA	2 cut(s)	362, 890
TspGWI	ACGGA	2 cut(s)	736, 745
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	2 cut(s)	877, 995
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.