Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007757.1

Orthogroup ID

OG0017039

Physical Location & Seq

Genomic Coordinates Reverse (-)

12819 .. 13202

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007757.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggccgatgatcagaattgctgcaccaaaaagagagcacagcaatgcgaatcaaagtggtccgagctcccaattgaattggaaaagcttgcgtccattgacatccttcgctttaaagcagtttgttcttcttggaagtatgctgcaaactcttacatcactgcaccttattacaagccattgcctcaatctccatggctcgtgcttggtaatggtcaagaagacaacagttgccggtttttcagtctcgaagagaaaaaggtctataccatcaagaacatattatttgaaggctgttgtgtgggctcatcacatgggtggctggtgattatgaacaaggattcaatcttaaatcttaaatcttttcaatcctgtttcaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

127

Amino Acids

14.57

Weight (kDa)

8.4

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05011 FvH4_4g05012
rosa_chinensis	RchiOBHm_Chr4g0395901
rosa_laevigata	RLG00000003519
rosa_multiflora	Rmu_sc0001103.1_g000012 Rmu_sc0002266.1_g000025 Rmu_sc0007757.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253690
rosa_rugosa	Rorug07G0076900 Rorug07G0205800
rosa_samantha	Rh7BG337100 Rh7CG219100 Rh7DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	378
AgsI	TTSAA	4 cut(s)	77, 290, 345, 368
AleI	CACNNNNGTG	1 cut(s)	316
AluBI	AGCT	2 cut(s)	67, 88
AluI	AGCT	2 cut(s)	67, 88
Alw21I	GWGCWC	2 cut(s)	40, 69
Alw26I	GTCTC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	21, 143
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	60
BanII	GRGCYC	2 cut(s)	69, 308
BauI	CACGAG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	40, 69
BbvI	GCAGC	2 cut(s)	8, 130
BccI	CCATC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	251
BisI	GCNGC	2 cut(s)	22, 144
BlsI	GCNGC	2 cut(s)	23, 145
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse118I	RCCGGY	1 cut(s)	234
Bse3DI	GCAATG	2 cut(s)	50, 179
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMI	GCAATG	2 cut(s)	50, 179
BseXI	GCAGC	2 cut(s)	8, 130
BsgI	GTGCAG	2 cut(s)	7, 147
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	40, 69
BsiSI	CCGG	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	3 cut(s)	40, 69, 308
Bsp143I	GATC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	194
BspANI	GGCC	1 cut(s)	5
BsrDI	GCAATG	2 cut(s)	50, 179
BsrFI	RCCGGY	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	10
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	194
Bst2BI	CACGAG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	194
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	8, 130
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	81
CviAII	CATG	2 cut(s)	195, 314
CviJI	RGCY	8 cut(s)	5, 67, 88, 178, 199, 294, 306, 322
CviKI_1	RGCY	8 cut(s)	5, 67, 88, 178, 199, 294, 306, 322
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
DraI	TTTAAA	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	194
Eco24I	GRGCYC	2 cut(s)	69, 308
Eco47I	GGWCC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	2 cut(s)	69, 308
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	2 cut(s)	198, 317
FaiI	YATR	6 cut(s)	141, 196, 267, 281, 315, 332
FatI	CATG	2 cut(s)	194, 313
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	22, 144
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	2 cut(s)	69, 308
Fsp4HI	GCNGC	2 cut(s)	22, 144
GluI	GCNGC	2 cut(s)	22, 144
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	235
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	198, 317
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	50, 341
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	1 cut(s)	337
Hpy188I	TCNGA	2 cut(s)	15, 64
Hpy188III	TCNNGA	3 cut(s)	218, 248, 274
HpyAV	CCTTC	2 cut(s)	116, 284
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	3 cut(s)	24, 146, 164
Hsp92II	CATG	2 cut(s)	198, 317
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	3 cut(s)	248, 308, 364
Lsp1109I	GCAGC	2 cut(s)	8, 130
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	3 cut(s)	120, 233, 263
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	3 cut(s)	40, 69, 308
MluCI	AATT	3 cut(s)	16, 72, 77
MnlI	CCTC	1 cut(s)	195
MseI	TTAA	3 cut(s)	114, 350, 357
MslI	CAYNNNNRTG	2 cut(s)	43, 316
MspI	CCGG	1 cut(s)	235
MunI	CAATTG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	194
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	198, 317
OliI	CACNNNNGTG	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	50, 341
PkrI	GCNGC	2 cut(s)	23, 145
Psp124BI	GAGCTC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	60
RseI	CAYNNNNRTG	2 cut(s)	43, 316
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	114, 350, 357
SatI	GCNGC	2 cut(s)	22, 144
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	60
SduI	GDGCHC	3 cut(s)	40, 69, 308
SetI	ASST	5 cut(s)	69, 90, 169, 264, 383
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	2 cut(s)	43, 316
Sse9I	AATT	3 cut(s)	16, 72, 77
SstI	GAGCTC	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	249
TasI	AATT	3 cut(s)	16, 72, 77
TfiI	GAWTC	2 cut(s)	50, 341
Tru1I	TTAA	3 cut(s)	114, 350, 357
Tru9I	TTAA	3 cut(s)	114, 350, 357
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	2 cut(s)	21, 143
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	60
XagI	CCTNNNNNAGG	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.