Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0017039

Physical Location & Seq

Genomic Coordinates Reverse (-)

5874921 .. 5876310

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0076900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTGTAGGTCGACGGACTACCCTGGCTTTCAGGCCAGGAGAGAAGCCCTAAAGATTCAAGCTTTCTTTATACGGTTTTCGGGTTTGGATTTTCGTAAGCCGTTACCGGAATCGCTCACTCTTTCGTATCTTCCGAGGATCAACGGCACCGCGCTCGAGATCGACGGGTCAAAGATCCGACCCGACTCGCCGGCGTTAGTGACGCTTCACCGCTCGGTTAATGCGAAGGTGAGGAAGGGGGAGGCGATATTCGGGTCGCGGGAGGCCGTTCGGGCCGGCGACGGGGTCCGGTTCGAGGCGTATTTGAGGGAGGAGAAGGTGCTGAAGGGGATTTTCAGGAAAGACGAGGGGCAGGAGTGGAAATTGGAGTGCAAGTGCGTGCTGGAGAGCGAGAGTGTCGGGGAGGAGGTCACGGCGGCGGAGGTGTGCGTGGCCGTGGAGGGACACGTGGCGATGAGCGAGAGGGTGGCGATGATTGTGAAAAGGCGGGGAAAGTGTGGGTTTCATCCGCTGGAGGAGATTCCGGAGGCGGACGAGGAATCGGACGGCGGGTGTTGTTGCACTTGCGGGGAAATGGACGGTGGAGATTTGGAGGAGGATGGTGACGTGGAGGAGGAGTTGGAGATGGATATGGAGGGAGTGAGATGGGCTGTGGATGTGGGCTTTTGGGTCATGTGTTTGGGTGTGGGCTACTTGGTTTCTAAGGCCTCATCCAAAAGCTTGAGACGCAGGAGATTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0014070 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032870 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1900457 GO:1900459 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

247

Amino Acids

27.55

Weight (kDa)

5.14

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05011 FvH4_4g05012
rosa_chinensis	RchiOBHm_Chr4g0395901
rosa_laevigata	RLG00000003519
rosa_multiflora	Rmu_sc0001103.1_g000012 Rmu_sc0002266.1_g000025 Rmu_sc0007757.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253690
rosa_rugosa	Rorug07G0076900 Rorug07G0205800
rosa_samantha	Rh7BG337100 Rh7CG219100 Rh7DG213700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccBSI	CCGCTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	2 cut(s)	152, 259
AccIII	TCCGGA	1 cut(s)	523
AclWI	GGATC	2 cut(s)	146, 169
AcoI	YGGCCR	1 cut(s)	432
AcuI	CTGAAG	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	448
AfiI	CCNNNNNNNGG	2 cut(s)	282, 295
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	1 cut(s)	59
AjiI	CACGTC	1 cut(s)	607
AjnI	CCWGG	2 cut(s)	22, 35
AluBI	AGCT	2 cut(s)	62, 720
AluI	AGCT	2 cut(s)	62, 720
Alw26I	GTCTC	1 cut(s)	718
AlwI	GGATC	2 cut(s)	146, 169
Ama87I	CYCGRG	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	523
AoxI	GGCC	5 cut(s)	33, 264, 273, 432, 705
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	273, 286
AsuHPI	GGTGA	3 cut(s)	200, 241, 614
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	448
BccI	CCATC	3 cut(s)	593, 619, 639
BceAI	ACGGC	6 cut(s)	85, 160, 251, 419, 429, 562
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	24, 37
BcoDI	GTCTC	1 cut(s)	718
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	2 cut(s)	24, 37
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	2 cut(s)	273, 286
BmiI	GGNNCC	2 cut(s)	148, 287
BmrFI	CCNGG	2 cut(s)	24, 37
BpmI	CTGGAG	2 cut(s)	404, 533
BpuEI	CTTGAG	1 cut(s)	742
BsaAI	YACGTR	1 cut(s)	448
BsaJI	CCNNGG	3 cut(s)	22, 134, 435
BsaWI	WCCGGW	3 cut(s)	106, 288, 523
BsaXI	ACNNNNNCTCC	4 cut(s)	359, 389, 602, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 295
Bse118I	RCCGGY	2 cut(s)	190, 275
BseAI	TCCGGA	1 cut(s)	523
BseBI	CCWGG	2 cut(s)	24, 37
BseDI	CCNNGG	3 cut(s)	22, 134, 435
BseGI	GGATG	4 cut(s)	505, 604, 661, 710
BseLI	CCNNNNNNNGG	2 cut(s)	282, 295
BseRI	GAGGAG	6 cut(s)	326, 419, 530, 608, 626, 629
Bsh1236I	CGCG	2 cut(s)	152, 259
BshFI	GGCC	5 cut(s)	35, 266, 275, 434, 707
BshNI	GGYRCC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	5 cut(s)	107, 191, 276, 289, 524
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	2 cut(s)	282, 295
BsmAI	GTCTC	1 cut(s)	718
BsmBI	CGTCTC	1 cut(s)	718
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	5 cut(s)	35, 266, 275, 434, 707
BsoBI	CYCGRG	1 cut(s)	155
Bsp13I	TCCGGA	1 cut(s)	523
Bsp143I	GATC	3 cut(s)	138, 159, 174
BspANI	GGCC	5 cut(s)	35, 266, 275, 434, 707
BspEI	TCCGGA	1 cut(s)	523
BspFNI	CGCG	2 cut(s)	152, 259
BspLI	GGNNCC	2 cut(s)	148, 287
BspPI	GGATC	2 cut(s)	146, 169
BspT107I	GGYRCC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	213
BsrFI	RCCGGY	2 cut(s)	190, 275
BssAI	RCCGGY	2 cut(s)	190, 275
BssECI	CCNNGG	3 cut(s)	22, 134, 435
BssMI	GATC	3 cut(s)	138, 159, 174
Bst2UI	CCWGG	2 cut(s)	24, 37
Bst4CI	ACNGT	2 cut(s)	75, 581
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	3 cut(s)	192, 277, 380
BstDEI	CTNAG	1 cut(s)	702
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	4 cut(s)	505, 604, 661, 710
BstFNI	CGCG	2 cut(s)	152, 259
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	3 cut(s)	141, 162, 177
BstMAI	GTCTC	1 cut(s)	718
BstMBI	GATC	3 cut(s)	138, 159, 174
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 726
BstNI	CCWGG	2 cut(s)	24, 37
BstSCI	CCNGG	2 cut(s)	22, 35
BstUI	CGCG	2 cut(s)	152, 259
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	5 cut(s)	35, 266, 275, 434, 707
BtgI	CCRYGG	1 cut(s)	435
BtgZI	GCGATG	2 cut(s)	467, 485
BtrI	CACGTC	1 cut(s)	607
BtsCI	GGATG	4 cut(s)	505, 604, 661, 710
Cac8I	GCNNGC	3 cut(s)	192, 277, 380
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	2 cut(s)	190, 275
Cfr13I	GGNCC	2 cut(s)	273, 286
CseI	GACGC	2 cut(s)	211, 735
CviAII	CATG	1 cut(s)	673
DdeI	CTNAG	1 cut(s)	702
DpnI	GATC	3 cut(s)	140, 161, 176
DpnII	GATC	3 cut(s)	138, 159, 174
EaeI	YGGCCR	1 cut(s)	432
EciI	GGCGGA	2 cut(s)	434, 545
Eco147I	AGGCCT	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	344
Eco72I	CACGTG	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	22, 35
Esp3I	CGTCTC	1 cut(s)	718
FaeI	CATG	1 cut(s)	676
FaiI	YATR	3 cut(s)	71, 632, 674
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	1 cut(s)	672
FauI	CCCGC	4 cut(s)	252, 480, 542, 560
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	4 cut(s)	492, 611, 668, 697
Fsp4HI	GCNGC	1 cut(s)	417
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	417
GsuI	CTGGAG	2 cut(s)	404, 533
HaeIII	GGCC	5 cut(s)	35, 266, 275, 434, 707
HapII	CCGG	5 cut(s)	107, 191, 276, 289, 524
HgaI	GACGC	2 cut(s)	211, 735
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	676
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	2 cut(s)	60, 718
HinfI	GANTC	5 cut(s)	55, 110, 185, 520, 539
HpaII	CCGG	5 cut(s)	107, 191, 276, 289, 524
HphI	GGTGA	3 cut(s)	200, 241, 614
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	3 cut(s)	135, 179, 544
Hpy188III	TCNNGA	3 cut(s)	157, 337, 524
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	3 cut(s)	16, 167, 284
HpyAV	CCTTC	4 cut(s)	220, 229, 310, 319
HpyCH4III	ACNGT	2 cut(s)	75, 581
HpyCH4IV	ACGT	2 cut(s)	447, 606
HpyCH4V	TGCA	2 cut(s)	372, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 726
HpyF3I	CTNAG	1 cut(s)	702
HpySE526I	ACGT	2 cut(s)	447, 606
Hsp92II	CATG	1 cut(s)	676
HspAI	GCGC	1 cut(s)	152
Kpn2I	TCCGGA	1 cut(s)	523
KroI	GCCGGC	2 cut(s)	190, 275
KroNI	GCCGGC	2 cut(s)	192, 277
Kzo9I	GATC	3 cut(s)	138, 159, 174
MaeII	ACGT	2 cut(s)	447, 606
MaeIII	GTNAC	4 cut(s)	102, 199, 409, 602
MalI	GATC	3 cut(s)	140, 161, 176
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	3 cut(s)	138, 159, 174
MboII	GAAGA	1 cut(s)	122
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	202, 600
MreI	CGCCGGCG	1 cut(s)	190
MroI	TCCGGA	1 cut(s)	523
MroNI	GCCGGC	2 cut(s)	190, 275
MseI	TTAA	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	5 cut(s)	107, 191, 276, 289, 524
MspR9I	CCNGG	2 cut(s)	24, 37
MvaI	CCWGG	2 cut(s)	24, 37
MvnI	CGCG	2 cut(s)	152, 259
MwoI	GCNNNNNNNGC	2 cut(s)	272, 726
NaeI	GCCGGC	2 cut(s)	192, 277
NdeII	GATC	3 cut(s)	138, 159, 174
NgoMIV	GCCGGC	2 cut(s)	190, 275
NlaIII	CATG	1 cut(s)	676
NlaIV	GGNNCC	2 cut(s)	148, 287
NmuCI	GTSAC	3 cut(s)	199, 409, 602
PaeR7I	CTCGAG	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	2 cut(s)	131, 221
PdiI	GCCGGC	2 cut(s)	192, 277
PfeI	GAWTC	4 cut(s)	55, 110, 520, 539
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	1 cut(s)	179
PmaCI	CACGTG	1 cut(s)	448
PmlI	CACGTG	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	179
Ppu21I	YACGTR	1 cut(s)	448
Psp6I	CCWGG	2 cut(s)	22, 35
PspCI	CACGTG	1 cut(s)	448
PspGI	CCWGG	2 cut(s)	22, 35
PspN4I	GGNNCC	2 cut(s)	148, 287
PspPI	GGNCC	2 cut(s)	273, 286
PsuI	RGATCY	1 cut(s)	174
PsyI	GACNNNGTC	1 cut(s)	284
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	3 cut(s)	138, 159, 174
Sau96I	GGNCC	2 cut(s)	273, 286
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	24, 37
SetI	ASST	9 cut(s)	11, 64, 231, 321, 411, 426, 450, 609, 722
SfiI	GGCCNNNNNGGCC	1 cut(s)	272
Sfr274I	CTCGAG	1 cut(s)	155
SgrAI	CRCCGGYG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	2 cut(s)	155, 721
SmoI	CTYRAG	2 cut(s)	155, 721
Sse9I	AATT	1 cut(s)	362
SseBI	AGGCCT	1 cut(s)	707
StuI	AGGCCT	1 cut(s)	707
StyD4I	CCNGG	2 cut(s)	22, 35
TaaI	ACNGT	2 cut(s)	75, 581
TaiI	ACGT	2 cut(s)	450, 609
TaqI	TCGA	4 cut(s)	11, 156, 162, 294
TasI	AATT	1 cut(s)	362
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	4 cut(s)	55, 110, 520, 539
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseFI	GTSAC	3 cut(s)	199, 409, 602
Tsp45I	GTSAC	3 cut(s)	199, 409, 602
TspDTI	ATGAA	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	29
Tth111I	GACNNNGTC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.