FvH4_4g11630
ERF Family

4'-phosphopantetheinyl transferase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002919
Physical Location & Seq
Reverse (-)
15338473 .. 15340464
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11630.t1

Sequence Viewer

Length: 570 bp
ATGCTGCGAATGCGCGGGACAAATGATAGAGTTGATCCGAGATCATTGAACTTTCAAAAGAACGGTTATGGGAAGCCTGAGGTAGATTGTCAAATTGAAGATGATTGGCAGCCACCAGCGTTGCATTTCAACATCTCACGCACTTCGTCCTTGATAGCTTGTGGAGTAGCCGCTGATTCACCTATTGGCATTGATGTGGAAGAGAAGCAGCGAAAGTTGAAGCACCATATTCTAGCTTTTGCCAGACGCTACTTCTCTTCTCATGAAGTGGAACATCTAACTTCTATTGAAATTCAGCGGCATCAGTTCATTAAATTATGGACTCTCAAGGTATCTGAAATAAGCCTAGAGTCTTTTGGCTCCGAAGACATTGCGAACACTGGAAGTATTTGCTTTAAAGTTGGCTGGTTCCCATTATGGTGCCATTTGCAATTTTGCATGGAAAAACACAACACTGTAGGAGGAAGAAATTTTCCCATAAATTTGACAGCACGAATAACGATCCAACTTGTTGAAGATGAATGTGAAGGTACTGATGCTGTTGTACGAATAGGTGAATTGACTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 map00770
Pfam Domains
Protein Families
ACPS

Protein Analysis

190

Amino Acids

21.63

Weight (kDa)

6.06

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACPS PF01648 61 - 110 1.6e-07 4'-phosphopantetheinyl transferase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 420
AccII CGCG 1 cut(s) 15
AciI CCGC 3 cut(s) 15, 171, 298
AclWI GGATC 2 cut(s) 29, 496
AcsI RAATTY 3 cut(s) 291, 469, 481
AfaI GTAC 2 cut(s) 532, 546
AgsI TTSAA 7 cut(s) 49, 56, 98, 130, 220, 290, 515
AluBI AGCT 2 cut(s) 158, 236
AluI AGCT 2 cut(s) 158, 236
AlwI GGATC 2 cut(s) 29, 496
ApeKI GCWGC 3 cut(s) 4, 109, 208
ApoI RAATTY 3 cut(s) 291, 469, 481
AspLEI GCGC 1 cut(s) 15
AsuHPI GGTGA 2 cut(s) 171, 566
AxyI CCTNAGG 1 cut(s) 78
BanI GGYRCC 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 121, 220
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BfaI CTAG 2 cut(s) 233, 347
BfmI CTRYAG 1 cut(s) 456
BisI GCNGC 5 cut(s) 5, 110, 171, 209, 299
BlsI GCNGC 5 cut(s) 6, 111, 172, 210, 300
BmiI GGNNCC 3 cut(s) 361, 410, 422
BmsI GCATC 2 cut(s) 310, 526
BpiI GAAGAC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 385
Bse21I CCTNAGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 369
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 385
BseXI GCAGC 2 cut(s) 121, 220
Bsh1236I CGCG 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 420
BslFI GGGAC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 15
Bsp143I GATC 3 cut(s) 34, 41, 501
BspACI CCGC 3 cut(s) 15, 171, 298
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 15
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 3 cut(s) 361, 410, 422
BspPI GGATC 2 cut(s) 29, 496
BspT107I GGYRCC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 1 cut(s) 385
BssMI GATC 3 cut(s) 34, 41, 501
Bst4CI ACNGT 2 cut(s) 65, 457
Bst6I CTCTTC 2 cut(s) 195, 262
BstDEI CTNAG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 3 cut(s) 37, 44, 504
BstMBI GATC 3 cut(s) 34, 41, 501
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 456
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 2 cut(s) 121, 220
BstV2I GAAGAC 1 cut(s) 372
Bsu36I CCTNAGG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 378, 453
CciI TCATGA 1 cut(s) 262
CfoI GCGC 1 cut(s) 15
CseI GACGC 1 cut(s) 255
Csp6I GTAC 2 cut(s) 531, 545
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 2 cut(s) 263, 439
CviJI RGCY 8 cut(s) 76, 112, 158, 170, 236, 345, 360, 405
CviKI_1 RGCY 8 cut(s) 76, 112, 158, 170, 236, 345, 360, 405
CviQI GTAC 2 cut(s) 531, 545
DdeI CTNAG 1 cut(s) 78
DpnI GATC 3 cut(s) 36, 43, 503
DpnII GATC 3 cut(s) 34, 41, 501
DraI TTTAAA 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 195, 262
EarI CTCTTC 2 cut(s) 195, 262
Eco81I CCTNAGG 1 cut(s) 78
FaeI CATG 2 cut(s) 266, 442
FaiI YATR 7 cut(s) 69, 228, 264, 319, 418, 440, 479
FaqI GGGAC 1 cut(s) 31
FatI CATG 2 cut(s) 262, 438
FauI CCCGC 1 cut(s) 8
Fnu4HI GCNGC 5 cut(s) 5, 110, 171, 209, 299
Fsp4HI GCNGC 5 cut(s) 5, 110, 171, 209, 299
FspBI CTAG 2 cut(s) 233, 347
GlaI GCGC 1 cut(s) 14
GluI GCNGC 5 cut(s) 5, 110, 171, 209, 299
HgaI GACGC 1 cut(s) 255
HhaI GCGC 1 cut(s) 15
Hin1II CATG 2 cut(s) 266, 442
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 3 cut(s) 176, 322, 350
HphI GGTGA 2 cut(s) 171, 566
Hpy188I TCNGA 3 cut(s) 39, 337, 364
Hpy188III TCNNGA 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 521
HpyCH4III ACNGT 2 cut(s) 65, 457
HpyCH4V TGCA 3 cut(s) 124, 430, 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 2 cut(s) 266, 442
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 3 cut(s) 34, 41, 501
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 5 cut(s) 90, 129, 256, 366, 391
Lsp1109I GCAGC 2 cut(s) 121, 220
LweI GCATC 2 cut(s) 310, 526
MaeI CTAG 2 cut(s) 233, 347
MalI GATC 3 cut(s) 36, 43, 503
MboI GATC 3 cut(s) 34, 41, 501
MboII GAAGA 6 cut(s) 110, 212, 249, 377, 477, 527
MluCI AATT 7 cut(s) 93, 291, 314, 431, 469, 481, 557
MlyI GAGTC 2 cut(s) 316, 359
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 2 cut(s) 73, 455
MseI TTAA 3 cut(s) 312, 396, 568
MslI CAYNNNNRTG 2 cut(s) 194, 418
MspA1I CMGCKG 2 cut(s) 173, 298
Mva1269I GAATGC 1 cut(s) 15
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 3 cut(s) 34, 41, 501
NlaIII CATG 2 cut(s) 266, 442
NlaIV GGNNCC 3 cut(s) 361, 410, 422
PagI TCATGA 1 cut(s) 262
PctI GAATGC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 5 cut(s) 6, 111, 172, 210, 300
PleI GAGTC 2 cut(s) 316, 358
PpsI GAGTC 2 cut(s) 316, 358
PspN4I GGNNCC 3 cut(s) 361, 410, 422
RsaI GTAC 2 cut(s) 532, 546
RsaNI GTAC 2 cut(s) 531, 545
RseI CAYNNNNRTG 2 cut(s) 194, 418
SaqAI TTAA 3 cut(s) 312, 396, 568
SatI GCNGC 5 cut(s) 5, 110, 171, 209, 299
Sau3AI GATC 3 cut(s) 34, 41, 501
SchI GAGTC 2 cut(s) 316, 359
SetI ASST 7 cut(s) 84, 160, 184, 238, 333, 532, 556
SfaNI GCATC 2 cut(s) 310, 526
SfcI CTRYAG 1 cut(s) 456
SmiMI CAYNNNNRTG 2 cut(s) 194, 418
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 7 cut(s) 93, 291, 314, 431, 469, 481, 557
SsiI CCGC 3 cut(s) 15, 171, 298
SspMI CTAG 2 cut(s) 233, 347
TaaI ACNGT 2 cut(s) 65, 457
TasI AATT 7 cut(s) 93, 291, 314, 431, 469, 481, 557
TauI GCSGC 2 cut(s) 173, 301
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 3 cut(s) 312, 396, 568
Tru9I TTAA 3 cut(s) 312, 396, 568
TscAI CASTG 2 cut(s) 385, 460
TseI GCWGC 3 cut(s) 4, 109, 208
TspDTI ATGAA 3 cut(s) 279, 298, 534
TspRI CASTG 2 cut(s) 385, 460
XapI RAATTY 3 cut(s) 291, 469, 481
XspI CTAG 2 cut(s) 233, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.