Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002919

Physical Location & Seq

Genomic Coordinates Reverse (-)

19693107 .. 19702236

Gene Structure 9130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG214700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGTTTTTATTCAGACGCAGAGCCTTTTTCAGAATTATGAATATTCATGGCCTCCAAAGCCATTTTTGCTCTGTTCCTTCTTCAACTCTGTTACCTGTTCAACTCCCAACTCGAATGGAGAGTCATTTGTGGTATGTTTTACCTGAGGAGGTGAAGAGTGAAACCCTTTTGAAACGGTATTTTGAGCTTCTCTCACCTTGTGAGAAGACAAATGTGCTGCGAATGCGCGGCGATGAGCTCCGAAAGAGAGCCCTGCTGGCCCGTGCGTTGGTTCGGACTACCATTGCTAGATATACAAACGATAGAGTTGATCCGAGGTCATTGAACTTTAAAAAGAACGGTTATGGGAAGCCTGAGGTAGACTGGCAAATTGCAGATCACTGGCAGCCACCTGCACTGCAATTCAACATCTCACACACTTCTTCCTTGATAGCTTGTGGAGTAGCTGTTGATTCACCAATCGGTATCGATGTGGAAGAGAAACAGCGAAAGTTGAAGCACCATATTCTAGCTTTTGCCAAACGATACTTCTCTACTCATGAAGTGGAACATTTAACTTCTATCTCAGACATTGAAGTTCAGCGGCAGCAGTTCCTTAAACTGTGGACTCTCAAGGAGGCATATGTGAAAGCATTGGGGAGGGGCTTCTCTGCTTCACCTTTTAAGACCTTTACCATTAGATTGAAGGCTGCAGCTAGGAGAGGCATTCCTCTATCTGAGGAATTGGATTCTCAGATATTCCCAGCCCTAGACAAATTACTTCTGGTCCAGAGTGTTGATCATAGAACTCACGACGAATTGACCAAAGATCCAGAAGGAGCTTATAGCCAACTACTTCGCCTACAGGAAGGAGCTAAAGAAAAAGATGCAGAATCAACCGGTCTAGATAATGGTTTAGATATAGATAAGACCATGCTTAGCTCTGGGAGCCAGAGATTATCAGCAGGGGCATCTTTAAGCAGAGGTTCATCAGGTAGCCGGCTGTCCACCACAATTAGCAGCTTTGGCACTCCTGCTCTGGTTAATTGCCAAGTGACAGAAGTAGTTGATGGGGAGAGCCTTGAAAAAATTAAGGTTGATCCCAAAGAGCGTAAAGCAGTTTCAATCAAAAGGTTGGCCATGATGAACAAAAATGAGCTTCCAATTTTGCTTATTGGAGCCATTGCTGCAGCTTGTCATGGAGTAATTTTTCCTGTATTCGGCTTACTACTCTCAAAAGCCATTAAAATGTTCTATGAACCGCATAGTGTGCTACGAGAAGACTCGAAAACATGGGCTGGACTGTATGTAGGGATGGGTTGCCTTGGGCTGGTTGTCGTTCCTGTGCAGAATTTCTTCTTTGGAGTTGCAGGTGGAAAATTGATACAGCAAATTCGTTCCTTGACATTTCAAAAGGTGGTGCACCAAGAAATTAGTTGGTTTGATGATCCCGCAAATTCAAGGTGGGTTAAACAAACAATAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

488

Amino Acids

54.9

Weight (kDa)

9.41

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AASDHPPT_N	PF22624	57 - 144	2.3e-07	4'-phosphopantetheinyl transferase, N-terminal
ACPS	PF01648	153 - 233	1.3e-16	4'-phosphopantetheinyl transferase superfamily
ABC_membrane	PF00664	383 - 480	3.8e-13	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02765 AT2G02765 AT2G02765 AT2G02765 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470
fragaria_vesca	FvH4_4g11630 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140
malus_domestica	MD12G1027200.v1.1 MD14G1027400.v1.1
prunus_persica	Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1
pyrus_communis	pycom12g02610
rosa_chinensis	RchiOBHm_Chr3g0474251
rosa_rugosa	Rorug03G0139700 Rorug03G0139700
rosa_samantha	Rh3AG190300 Rh3BG219400 Rh3CG214700 Rh3DG214900
rosa_wichuraiana	Rw3G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	400, 1340
Acc36I	ACCTGC	2 cut(s)	400, 1340
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	228
AciI	CCGC	4 cut(s)	228, 583, 1241, 1431
AclWI	GGATC	4 cut(s)	305, 803, 1073, 1421
AcoI	YGGCCR	1 cut(s)	1116
AcsI	RAATTY	3 cut(s)	1330, 1371, 1435
AdeI	CACNNNGTG	1 cut(s)	200
AfiI	CCNNNNNNNGG	3 cut(s)	268, 1199, 1309
AgeI	ACCGGT	1 cut(s)	878
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
Alw21I	GWGCWC	2 cut(s)	240, 1404
Alw44I	GTGCAC	1 cut(s)	1400
AlwI	GGATC	4 cut(s)	305, 803, 1073, 1421
AoxI	GGCC	3 cut(s)	49, 258, 1116
ApaLI	GTGCAC	1 cut(s)	1400
ApeKI	GCWGC	8 cut(s)	217, 385, 586, 689, 692, 999, 1166, 1169
ApoI	RAATTY	3 cut(s)	1330, 1371, 1435
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AsiGI	ACCGGT	1 cut(s)	878
Asp700I	GAANNNNTTC	1 cut(s)	1334
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	259, 766
AsuHPI	GGTGA	4 cut(s)	163, 186, 447, 648
AvaII	GGWCC	1 cut(s)	766
AxyI	CCTNAGG	2 cut(s)	144, 354
BaeGI	GKGCMC	1 cut(s)	1404
BalI	TGGCCA	1 cut(s)	1118
BanII	GRGCYC	2 cut(s)	240, 253
BbsI	GAAGAC	2 cut(s)	212, 1266
Bbv12I	GWGCWC	2 cut(s)	240, 1404
BbvI	GCAGC	8 cut(s)	204, 397, 598, 676, 704, 1011, 1153, 1181
BccI	CCATC	2 cut(s)	1043, 1288
BclI	TGATCA	1 cut(s)	778
BfaI	CTAG	5 cut(s)	288, 509, 696, 749, 884
BfmI	CTRYAG	3 cut(s)	690, 842, 1167
BfuAI	ACCTGC	2 cut(s)	400, 1340
BglI	GCCNNNNNGGC	1 cut(s)	257
BlpI	GCTNAGC	1 cut(s)	917
Bme18I	GGWCC	1 cut(s)	766
BmgT120I	GGNCC	2 cut(s)	259, 766
BmiI	GGNNCC	2 cut(s)	929, 1159
BmsI	GCATC	2 cut(s)	856, 959
BpiI	GAAGAC	2 cut(s)	212, 1266
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
Bpu1102I	GCTNAGC	1 cut(s)	917
BpuEI	CTTGAG	1 cut(s)	596
Bsa29I	ATCGAT	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	314, 1303
BsaWI	WCCGGW	1 cut(s)	878
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 1199, 1309
Bse118I	RCCGGY	2 cut(s)	878, 978
Bse1I	ACTGG	2 cut(s)	368, 386
Bse21I	CCTNAGG	2 cut(s)	144, 354
Bse3DI	GCAATG	2 cut(s)	282, 1161
BseCI	ATCGAT	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	314, 1303
BseGI	GGATG	1 cut(s)	1299
BseLI	CCNNNNNNNGG	3 cut(s)	268, 1199, 1309
BseMI	GCAATG	2 cut(s)	282, 1161
BseMII	CTCAG	5 cut(s)	135, 345, 579, 708, 746
BseNI	ACTGG	2 cut(s)	368, 386
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	1404
BseXI	GCAGC	8 cut(s)	204, 397, 598, 676, 704, 1011, 1153, 1181
BseYI	CCCAGC	1 cut(s)	742
BsgI	GTGCAG	2 cut(s)	378, 1346
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	3 cut(s)	51, 260, 1118
BshTI	ACCGGT	1 cut(s)	878
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	2 cut(s)	240, 1404
BsiSI	CCGG	2 cut(s)	879, 979
BslI	CCNNNNNNNGG	3 cut(s)	268, 1199, 1309
BsmI	GAATGC	2 cut(s)	228, 705
BsnI	GGCC	3 cut(s)	51, 260, 1118
Bsp1286I	GDGCHC	3 cut(s)	240, 253, 1404
Bsp143I	GATC	6 cut(s)	310, 376, 778, 808, 1078, 1426
Bsp1720I	GCTNAGC	1 cut(s)	917
BspACI	CCGC	4 cut(s)	228, 583, 1241, 1431
BspANI	GGCC	3 cut(s)	51, 260, 1118
BspCNI	CTCAG	5 cut(s)	136, 346, 578, 709, 745
BspDI	ATCGAT	1 cut(s)	468
BspFNI	CGCG	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	929, 1159
BspMAI	CTGCAG	2 cut(s)	694, 1171
BspMI	ACCTGC	2 cut(s)	400, 1340
BspPI	GGATC	4 cut(s)	305, 803, 1073, 1421
BsrDI	GCAATG	2 cut(s)	282, 1161
BsrFI	RCCGGY	2 cut(s)	878, 978
BsrI	ACTGG	2 cut(s)	368, 386
BssAI	RCCGGY	2 cut(s)	878, 978
BssECI	CCNNGG	2 cut(s)	314, 1303
BssMI	GATC	6 cut(s)	310, 376, 778, 808, 1078, 1426
BssT1I	CCWWGG	1 cut(s)	1303
Bst4CI	ACNGT	4 cut(s)	177, 341, 603, 1284
Bst6I	CTCTTC	2 cut(s)	149, 471
BstAPI	GCANNNNNTGC	1 cut(s)	1249
BstC8I	GCNNGC	2 cut(s)	258, 980
BstDEI	CTNAG	6 cut(s)	144, 354, 565, 717, 732, 917
BstF5I	GGATG	1 cut(s)	1299
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	6 cut(s)	313, 379, 781, 811, 1081, 1429
BstMBI	GATC	6 cut(s)	310, 376, 778, 808, 1078, 1426
BstMWI	GCNNNNNNNGC	8 cut(s)	57, 66, 223, 257, 927, 1005, 1166, 1249
BstSFI	CTRYAG	3 cut(s)	690, 842, 1167
BstSLI	GKGCMC	1 cut(s)	1404
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	8 cut(s)	204, 397, 598, 676, 704, 1011, 1153, 1181
BstV2I	GAAGAC	2 cut(s)	212, 1266
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
Bsu15I	ATCGAT	1 cut(s)	468
Bsu36I	CCTNAGG	2 cut(s)	144, 354
BsuRI	GGCC	3 cut(s)	51, 260, 1118
BsuTUI	ATCGAT	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	1299
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	379, 395
BveI	ACCTGC	2 cut(s)	400, 1340
Cac8I	GCNNGC	2 cut(s)	258, 980
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	2 cut(s)	878, 978
Cfr13I	GGNCC	2 cut(s)	259, 766
ClaI	ATCGAT	1 cut(s)	468
CseI	GACGC	1 cut(s)	24
CspAI	ACCGGT	1 cut(s)	878
CviAII	CATG	6 cut(s)	47, 539, 913, 1120, 1178, 1272
DdeI	CTNAG	6 cut(s)	144, 354, 565, 717, 732, 917
DpnI	GATC	6 cut(s)	312, 378, 780, 810, 1080, 1428
DpnII	GATC	6 cut(s)	310, 376, 778, 808, 1078, 1426
DraI	TTTAAA	1 cut(s)	331
DraIII	CACNNNGTG	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	1116
Eam1104I	CTCTTC	2 cut(s)	149, 471
EarI	CTCTTC	2 cut(s)	149, 471
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	1303
Eco24I	GRGCYC	2 cut(s)	240, 253
Eco47I	GGWCC	1 cut(s)	766
Eco53kI	GAGCTC	1 cut(s)	238
Eco81I	CCTNAGG	2 cut(s)	144, 354
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	1303
EcoT38I	GRGCYC	2 cut(s)	240, 253
ErhI	CCWWGG	1 cut(s)	1303
FaeI	CATG	6 cut(s)	50, 542, 916, 1123, 1181, 1275
FatI	CATG	6 cut(s)	46, 538, 912, 1119, 1177, 1271
FauI	CCCGC	1 cut(s)	1438
FauNDI	CATATG	1 cut(s)	622
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	360
FokI	GGATG	1 cut(s)	1306
FriOI	GRGCYC	2 cut(s)	240, 253
FspBI	CTAG	5 cut(s)	288, 509, 696, 749, 884
GlaI	GCGC	1 cut(s)	227
GsaI	CCCAGC	1 cut(s)	746
HaeIII	GGCC	3 cut(s)	51, 260, 1118
HapII	CCGG	2 cut(s)	879, 979
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	6 cut(s)	50, 542, 916, 1123, 1181, 1275
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	6 cut(s)	121, 452, 607, 728, 872, 1262
HpaII	CCGG	2 cut(s)	879, 979
HphI	GGTGA	4 cut(s)	163, 186, 447, 648
Hpy166II	GTNNAC	4 cut(s)	361, 606, 987, 1402
Hpy188I	TCNGA	8 cut(s)	14, 32, 242, 276, 315, 568, 718, 735
Hpy188III	TCNNGA	5 cut(s)	539, 769, 791, 812, 884
Hpy8I	GTNNAC	4 cut(s)	361, 606, 987, 1402
Hpy99I	CGWCG	1 cut(s)	797
HpyAV	CCTTC	4 cut(s)	87, 679, 809, 842
HpyCH4III	ACNGT	4 cut(s)	177, 341, 603, 1284
HpyCH4V	TGCA	9 cut(s)	374, 395, 400, 692, 869, 1169, 1327, 1349, 1402
HpyF10VI	GCNNNNNNNGC	8 cut(s)	57, 66, 223, 257, 927, 1005, 1166, 1249
HpyF3I	CTNAG	6 cut(s)	144, 354, 565, 717, 732, 917
Hsp92II	CATG	6 cut(s)	50, 542, 916, 1123, 1181, 1275
HspAI	GCGC	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	978
KroNI	GCCGGC	1 cut(s)	980
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	6 cut(s)	310, 376, 778, 808, 1078, 1426
LmnI	GCTCC	5 cut(s)	243, 818, 851, 927, 1157
Lsp1109I	GCAGC	8 cut(s)	204, 397, 598, 676, 704, 1011, 1153, 1181
LweI	GCATC	2 cut(s)	856, 959
MaeI	CTAG	5 cut(s)	288, 509, 696, 749, 884
MaeIII	GTNAC	2 cut(s)	90, 1033
MalI	GATC	6 cut(s)	312, 378, 780, 810, 1080, 1428
MboI	GATC	6 cut(s)	310, 376, 778, 808, 1078, 1426
MboII	GAAGA	7 cut(s)	72, 166, 217, 414, 488, 1271, 1327
MflI	RGATCY	1 cut(s)	808
MhlI	GDGCHC	3 cut(s)	240, 253, 1404
MlsI	TGGCCA	1 cut(s)	1118
MluNI	TGGCCA	1 cut(s)	1118
MlyI	GAGTC	3 cut(s)	130, 601, 1256
Mox20I	TGGCCA	1 cut(s)	1118
MroNI	GCCGGC	1 cut(s)	978
MroXI	GAANNNNTTC	1 cut(s)	1334
MscI	TGGCCA	1 cut(s)	1118
MseI	TTAA	9 cut(s)	330, 554, 597, 663, 956, 1023, 1071, 1224, 1449
MslI	CAYNNNNRTG	1 cut(s)	1226
Msp20I	TGGCCA	1 cut(s)	1118
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	2 cut(s)	879, 979
Mva1269I	GAATGC	2 cut(s)	228, 705
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	8 cut(s)	57, 66, 223, 257, 927, 1005, 1166, 1249
NaeI	GCCGGC	1 cut(s)	980
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	6 cut(s)	310, 376, 778, 808, 1078, 1426
NgoMIV	GCCGGC	1 cut(s)	978
NlaIII	CATG	6 cut(s)	50, 542, 916, 1123, 1181, 1275
NlaIV	GGNNCC	2 cut(s)	929, 1159
NmuCI	GTSAC	1 cut(s)	1033
PagI	TCATGA	1 cut(s)	538
PaqCI	CACCTGC	2 cut(s)	400, 1340
PctI	GAATGC	2 cut(s)	228, 705
PdiI	GCCGGC	1 cut(s)	980
PdmI	GAANNNNTTC	1 cut(s)	1334
PfeI	GAWTC	3 cut(s)	452, 728, 872
PinAI	ACCGGT	1 cut(s)	878
PleI	GAGTC	3 cut(s)	129, 601, 1256
PpsI	GAGTC	3 cut(s)	129, 601, 1256
Psp124BI	GAGCTC	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	742
PspN4I	GGNNCC	2 cut(s)	929, 1159
PspPI	GGNCC	2 cut(s)	259, 766
PstI	CTGCAG	2 cut(s)	694, 1171
PsuI	RGATCY	1 cut(s)	808
RseI	CAYNNNNRTG	1 cut(s)	1226
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	9 cut(s)	330, 554, 597, 663, 956, 1023, 1071, 1224, 1449
Sau3AI	GATC	6 cut(s)	310, 376, 778, 808, 1078, 1426
Sau96I	GGNCC	2 cut(s)	259, 766
SchI	GAGTC	3 cut(s)	130, 601, 1256
SduI	GDGCHC	3 cut(s)	240, 253, 1404
SfaNI	GCATC	2 cut(s)	856, 959
SfcI	CTRYAG	3 cut(s)	690, 842, 1167
SinI	GGWCC	1 cut(s)	766
SmiMI	CAYNNNNRTG	1 cut(s)	1226
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SsiI	CCGC	4 cut(s)	228, 583, 1241, 1431
SspI	AATATT	1 cut(s)	43
SspMI	CTAG	5 cut(s)	288, 509, 696, 749, 884
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	1303
TaaI	ACNGT	4 cut(s)	177, 341, 603, 1284
TaqI	TCGA	3 cut(s)	112, 468, 1265
TauI	GCSGC	2 cut(s)	231, 586
TfiI	GAWTC	3 cut(s)	452, 728, 872
Tru1I	TTAA	9 cut(s)	330, 554, 597, 663, 956, 1023, 1071, 1224, 1449
Tru9I	TTAA	9 cut(s)	330, 554, 597, 663, 956, 1023, 1071, 1224, 1449
TscAI	CASTG	2 cut(s)	386, 402
TseFI	GTSAC	1 cut(s)	1033
TseI	GCWGC	8 cut(s)	217, 385, 586, 689, 692, 999, 1166, 1169
Tsp45I	GTSAC	1 cut(s)	1033
TspDTI	ATGAA	6 cut(s)	35, 53, 555, 957, 1139, 1251
TspRI	CASTG	2 cut(s)	386, 402
VneI	GTGCAC	1 cut(s)	1400
VpaK11BI	GGWCC	1 cut(s)	766
XapI	RAATTY	3 cut(s)	1330, 1371, 1435
XbaI	TCTAGA	1 cut(s)	883
XmiI	GTMKAC	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	1334
XspI	CTAG	5 cut(s)	288, 509, 696, 749, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.