Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002919

Physical Location & Seq

Genomic Coordinates Reverse (-)

19785775 .. 19791460

Gene Structure 5686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG214900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTTTTTATTCAGACGCAGAGCCTTTTTCAGAATTATGAATATTCATGGCCTCCAAAGCCATTTTTGCTCTGTTCCTTCTTCAACTCTGTTACCTGTTCAACTCCCAACTCGAATGTATGTATTTACCACACAATGTTCAATTGTAGTGACTGATTTGTCAGATTGTTATCTTAGAAATTATGGGTTTTGTAGGGAGAGTCATTTGTGGTATGTTTTACCTGAGGAGGTGAAGAGTGAAACCCTTTTGAAACGGTATTTTGAGCTTCTCTCACCTTGTGAGAAGACAAATGTGCTGCGAATGCGCGGCGATGAGCTCCGAAAGAGAGCCCTGCTGGCCCGTGCGTTGGTTCGGACTACCATTGCTAGATATACAAACGATAGAGTTGATCCGAGGTCATTGAACTTTAAAAAGAACGGTTATGGGAAGCCTGAGGTAGACTGGCAAATTGCAGATCACTGGCAGCCACCTGCACTGCAATTCAACATCTCACACACTTCTTCCTTGATAGCTTGTGGAGTAGCTGTTGATTCACCAATCGGTATCGATGTGGAAGAGAAACACCGAAAGTTGAAGCACCATATTCTAGCTTTTGCCAAACGATACTTCTCTACTCATGAAGTGGAACATTTAACTTCTATCTCAGACATTGAAATTCAGCGGCAACAGTTCCTTAAACTGTGGACTCTCAAGGTCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

233

Amino Acids

27.33

Weight (kDa)

9.38

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AASDHPPT_N	PF22624	83 - 171	5.6e-08	4'-phosphopantetheinyl transferase, N-terminal
ACPS	PF01648	179 - 231	6.3e-07	4'-phosphopantetheinyl transferase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02765 AT2G02765 AT2G02765 AT2G02765 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470
fragaria_vesca	FvH4_4g11630 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140
malus_domestica	MD12G1027200.v1.1 MD14G1027400.v1.1
prunus_persica	Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1
pyrus_communis	pycom12g02610
rosa_chinensis	RchiOBHm_Chr3g0474251
rosa_rugosa	Rorug03G0139700 Rorug03G0139700
rosa_samantha	Rh3AG190300 Rh3BG219400 Rh3CG214700 Rh3DG214900
rosa_wichuraiana	Rw3G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	478
AasI	GACNNNNNNGTC	1 cut(s)	157
Acc36I	ACCTGC	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	438
AccII	CGCG	1 cut(s)	306
AciI	CCGC	2 cut(s)	306, 661
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	654
AdeI	CACNNNGTG	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	8 cut(s)	84, 101, 141, 250, 403, 484, 574, 653
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AluBI	AGCT	5 cut(s)	265, 316, 512, 524, 590
AluI	AGCT	5 cut(s)	265, 316, 512, 524, 590
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	383
AoxI	GGCC	2 cut(s)	49, 336
ApeKI	GCWGC	2 cut(s)	295, 463
ApoI	RAATTY	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	3 cut(s)	241, 264, 525
AxyI	CCTNAGG	2 cut(s)	222, 432
BanII	GRGCYC	2 cut(s)	318, 331
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	282, 475
BfaI	CTAG	2 cut(s)	366, 587
BfuAI	ACCTGC	1 cut(s)	478
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	4 cut(s)	296, 307, 464, 662
BlsI	GCNGC	4 cut(s)	297, 308, 465, 663
BmgT120I	GGNCC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	290
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpuEI	CTTGAG	1 cut(s)	674
Bsa29I	ATCGAT	1 cut(s)	546
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	392
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	2 cut(s)	446, 464
Bse21I	CCTNAGG	2 cut(s)	222, 432
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	392
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	3 cut(s)	213, 423, 657
BseNI	ACTGG	2 cut(s)	446, 464
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	282, 475
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	51, 338
BshVI	ATCGAT	1 cut(s)	546
BsiHKAI	GWGCWC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	51, 338
Bsp1286I	GDGCHC	2 cut(s)	318, 331
Bsp143I	GATC	2 cut(s)	388, 454
BspACI	CCGC	2 cut(s)	306, 661
BspANI	GGCC	2 cut(s)	51, 338
BspCNI	CTCAG	3 cut(s)	214, 424, 656
BspDI	ATCGAT	1 cut(s)	546
BspFNI	CGCG	1 cut(s)	306
BspHI	TCATGA	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	446, 464
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	2 cut(s)	388, 454
Bst4CI	ACNGT	4 cut(s)	255, 419, 669, 681
Bst6I	CTCTTC	2 cut(s)	227, 549
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	4 cut(s)	173, 222, 432, 643
BstFNI	CGCG	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	2 cut(s)	391, 457
BstMBI	GATC	2 cut(s)	388, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 66, 301, 335
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	282, 475
BstV2I	GAAGAC	1 cut(s)	290
Bsu15I	ATCGAT	1 cut(s)	546
Bsu36I	CCTNAGG	2 cut(s)	222, 432
BsuRI	GGCC	2 cut(s)	51, 338
BsuTUI	ATCGAT	1 cut(s)	546
BtgZI	GCGATG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	2 cut(s)	457, 473
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	336
CciI	TCATGA	1 cut(s)	616
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	337
ClaI	ATCGAT	1 cut(s)	546
CseI	GACGC	1 cut(s)	24
CviAII	CATG	2 cut(s)	47, 617
DdeI	CTNAG	4 cut(s)	173, 222, 432, 643
DpnI	GATC	2 cut(s)	390, 456
DpnII	GATC	2 cut(s)	388, 454
DraI	TTTAAA	1 cut(s)	409
DraIII	CACNNNGTG	1 cut(s)	278
DrdI	GACNNNNNNGTC	1 cut(s)	157
DseDI	GACNNNNNNGTC	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	227, 549
EarI	CTCTTC	2 cut(s)	227, 549
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	2 cut(s)	318, 331
Eco53kI	GAGCTC	1 cut(s)	316
Eco81I	CCTNAGG	2 cut(s)	222, 432
EcoICRI	GAGCTC	1 cut(s)	316
EcoT38I	GRGCYC	2 cut(s)	318, 331
FaeI	CATG	2 cut(s)	50, 620
FaiI	YATR	9 cut(s)	38, 48, 120, 183, 213, 372, 423, 582, 618
FatI	CATG	2 cut(s)	46, 616
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	4 cut(s)	296, 307, 464, 662
FriOI	GRGCYC	2 cut(s)	318, 331
Fsp4HI	GCNGC	4 cut(s)	296, 307, 464, 662
FspBI	CTAG	2 cut(s)	366, 587
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	4 cut(s)	296, 307, 464, 662
HaeIII	GGCC	2 cut(s)	51, 338
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	50, 620
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HinfI	GANTC	3 cut(s)	199, 530, 685
HphI	GGTGA	3 cut(s)	241, 264, 525
Hpy166II	GTNNAC	2 cut(s)	439, 684
Hpy188I	TCNGA	7 cut(s)	14, 32, 163, 320, 354, 393, 646
Hpy188III	TCNNGA	1 cut(s)	617
Hpy8I	GTNNAC	2 cut(s)	439, 684
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	4 cut(s)	255, 419, 669, 681
HpyCH4V	TGCA	3 cut(s)	452, 473, 478
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 66, 301, 335
HpyF3I	CTNAG	4 cut(s)	173, 222, 432, 643
Hsp92II	CATG	2 cut(s)	50, 620
HspAI	GCGC	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	388, 454
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	8 cut(s)	108, 234, 320, 344, 427, 444, 445, 483
Lsp1109I	GCAGC	2 cut(s)	282, 475
MaeI	CTAG	2 cut(s)	366, 587
MaeIII	GTNAC	2 cut(s)	90, 148
MalI	GATC	2 cut(s)	390, 456
MboI	GATC	2 cut(s)	388, 454
MboII	GAAGA	5 cut(s)	72, 244, 295, 492, 566
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	2 cut(s)	318, 331
MluCI	AATT	6 cut(s)	33, 141, 178, 447, 479, 654
MlyI	GAGTC	2 cut(s)	208, 679
MnlI	CCTC	5 cut(s)	62, 217, 220, 387, 427
MseI	TTAA	3 cut(s)	408, 632, 675
MspA1I	CMGCKG	1 cut(s)	661
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	306
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	4 cut(s)	57, 66, 301, 335
NdeII	GATC	2 cut(s)	388, 454
NlaIII	CATG	2 cut(s)	50, 620
NmuCI	GTSAC	1 cut(s)	148
PagI	TCATGA	1 cut(s)	616
PaqCI	CACCTGC	1 cut(s)	478
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	530
PkrI	GCNGC	4 cut(s)	297, 308, 465, 663
PleI	GAGTC	2 cut(s)	207, 679
PpsI	GAGTC	2 cut(s)	207, 679
Psp124BI	GAGCTC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	408, 632, 675
SatI	GCNGC	4 cut(s)	296, 307, 464, 662
Sau3AI	GATC	2 cut(s)	388, 454
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	2 cut(s)	208, 679
SduI	GDGCHC	2 cut(s)	318, 331
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	6 cut(s)	33, 141, 178, 447, 479, 654
SsiI	CCGC	2 cut(s)	306, 661
SspI	AATATT	1 cut(s)	43
SspMI	CTAG	2 cut(s)	366, 587
SstI	GAGCTC	1 cut(s)	318
TaaI	ACNGT	4 cut(s)	255, 419, 669, 681
TaqI	TCGA	2 cut(s)	112, 546
TasI	AATT	6 cut(s)	33, 141, 178, 447, 479, 654
TauI	GCSGC	2 cut(s)	309, 664
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	3 cut(s)	408, 632, 675
Tru9I	TTAA	3 cut(s)	408, 632, 675
TscAI	CASTG	2 cut(s)	464, 480
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	295, 463
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	35, 53, 633
TspRI	CASTG	2 cut(s)	464, 480
XapI	RAATTY	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	2 cut(s)	366, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.