Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002919

Physical Location & Seq

Genomic Coordinates Reverse (-)

12657469 .. 12660334

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19140.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTTTTTATTCAGACGCAGCGTCTTTTTGAGAATGAATATTCATGGCCTCCCAAGAAATTTATGCTCTGCTCCCTCAACTTTGTTACCTGTTCAACTCCCAACTCGAATGGAGAGTCATTTGTGGTATGTTGTACCTGAGGAGGTGAAGAGTGAGACCCTTTTGAAGCGGTATTTTCAGCTTCTCTCACCTTGTGAGAAGAAAAATGTGCTGCGAATGCGGGGGGATGAGCTCCAAAAGAGAGCCTTGCTGGCCCGAGCGTTGGTTCGGACTACCATTGCTAGATATACGAATGATAGAGTTGATCCGAGATCATTGAACTTTAAAAAGAACGGTTATGGAAAGCCTGAGGTAGATTGGAAAATTGAAGATGATTGGCAGCCACCAGCATTGCATTTCAACATCTCACACACTTCTTCCTTGATAGCTTGTGGAGTAGCCTTTGATTCACCTATTGGTATCGATGTGGAAGAGAAACAGCGAAAATTGAAGCACCATATTCTAGCTTTTGCCAGACGGTACTTCTCTTCTCATGAAGTGGATCATTTAACTTCTATTTCAGACTTTGAACTTCAGCGGCATCAGTTCATTAAATTATGGACTCTCAAGGAGGCATATGTGAAAGCATTGGGGAGGGGCTTCTCTGCTTCACCTTTTAAGACCTTTACCATTAAATTGAAAGCTGCAGCTAAGAGAGGCATTCCTGAATCTAGGGATTCTAAGATATCTGAAATAAGTGTCGAGTCTCTTGGCTCTGAAGACCTTACAAACAACTGGCAATTTTTGCTTCTAGAGTTGGCTGGCTCCCATTATGGTGCCATTTGCATGGAGAAACATAATACTCTTGGAGAAGGAAATGTTCCCATAAAATTGACGGCGCGAAGAACGATTCCACTTGTTGAAGATGAATTTGTAGGAACTGATGCTGTTGTACCAATTGGTGGATTGACTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

319

Amino Acids

36.24

Weight (kDa)

9.28

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AASDHPPT_N	PF22624	55 - 142	4.2e-08	4'-phosphopantetheinyl transferase, N-terminal
ACPS	PF01648	151 - 230	1.4e-16	4'-phosphopantetheinyl transferase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02765 AT2G02765 AT2G02765 AT2G02765 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470
fragaria_vesca	FvH4_4g11630 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140
malus_domestica	MD12G1027200.v1.1 MD14G1027400.v1.1
prunus_persica	Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1
pyrus_communis	pycom12g02610
rosa_chinensis	RchiOBHm_Chr3g0474251
rosa_rugosa	Rorug03G0139700 Rorug03G0139700
rosa_samantha	Rh3AG190300 Rh3BG219400 Rh3CG214700 Rh3DG214900
rosa_wichuraiana	Rw3G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	815
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccII	CGCG	1 cut(s)	880
AciI	CCGC	3 cut(s)	169, 220, 577
AclWI	GGATC	2 cut(s)	299, 549
AcsI	RAATTY	2 cut(s)	58, 908
AcuI	CTGAAG	2 cut(s)	557, 777
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	3 cut(s)	135, 521, 933
AfiI	CCNNNNNNNGG	2 cut(s)	262, 941
AgsI	TTSAA	9 cut(s)	95, 166, 319, 368, 400, 490, 569, 679, 902
AhdI	GACNNNNNGTC	1 cut(s)	20
AluBI	AGCT	6 cut(s)	181, 232, 428, 506, 683, 689
AluI	AGCT	6 cut(s)	181, 232, 428, 506, 683, 689
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	149, 750
AlwI	GGATC	2 cut(s)	299, 549
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	2 cut(s)	46, 252
ApeKI	GCWGC	5 cut(s)	18, 211, 379, 683, 686
ApoI	RAATTY	2 cut(s)	58, 908
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
AspLEI	GCGC	1 cut(s)	880
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	4 cut(s)	157, 180, 441, 642
AvaI	CYCGRG	1 cut(s)	255
AxyI	CCTNAGG	2 cut(s)	138, 348
BanI	GGYRCC	1 cut(s)	815
BanII	GRGCYC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	765
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	5 cut(s)	30, 198, 391, 670, 698
BceAI	ACGGC	1 cut(s)	891
BcoDI	GTCTC	2 cut(s)	149, 750
BfaI	CTAG	4 cut(s)	282, 503, 711, 791
BfmI	CTRYAG	1 cut(s)	684
BglI	GCCNNNNNGGC	1 cut(s)	251
BisI	GCNGC	6 cut(s)	19, 212, 380, 578, 684, 687
BlsI	GCNGC	6 cut(s)	20, 213, 381, 579, 685, 688
BmeRI	GACNNNNNGTC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	2 cut(s)	805, 817
BmsI	GCATC	2 cut(s)	589, 913
BpiI	GAAGAC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	590
Bsa29I	ATCGAT	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 941
Bse1I	ACTGG	1 cut(s)	779
Bse21I	CCTNAGG	2 cut(s)	138, 348
Bse3DI	GCAATG	2 cut(s)	276, 389
BseCI	ATCGAT	1 cut(s)	462
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	262, 941
BseMI	GCAATG	2 cut(s)	276, 389
BseMII	CTCAG	2 cut(s)	129, 339
BseNI	ACTGG	1 cut(s)	779
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	5 cut(s)	30, 198, 391, 670, 698
Bsh1236I	CGCG	1 cut(s)	880
BshFI	GGCC	2 cut(s)	48, 254
BshNI	GGYRCC	1 cut(s)	815
BshVI	ATCGAT	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	262, 941
BsmAI	GTCTC	2 cut(s)	149, 750
BsmI	GAATGC	2 cut(s)	222, 699
BsnI	GGCC	2 cut(s)	48, 254
Bso31I	GGTCTC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	304, 311, 541
BspACI	CCGC	3 cut(s)	169, 220, 577
BspANI	GGCC	2 cut(s)	48, 254
BspCNI	CTCAG	2 cut(s)	130, 340
BspDI	ATCGAT	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	880
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	805, 817
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	2 cut(s)	299, 549
BspT107I	GGYRCC	1 cut(s)	815
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	276, 389
BsrI	ACTGG	1 cut(s)	779
BssMI	GATC	3 cut(s)	304, 311, 541
Bst4CI	ACNGT	2 cut(s)	335, 519
Bst6I	CTCTTC	3 cut(s)	143, 465, 532
BstAPI	GCANNNNNTGC	1 cut(s)	784
BstC8I	GCNNGC	2 cut(s)	252, 802
BstDEI	CTNAG	4 cut(s)	138, 348, 690, 720
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	880
BstHHI	GCGC	1 cut(s)	880
BstKTI	GATC	3 cut(s)	307, 314, 544
BstMAI	GTCTC	2 cut(s)	149, 750
BstMBI	GATC	3 cut(s)	304, 311, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 251, 784
BstSFI	CTRYAG	1 cut(s)	684
BstUI	CGCG	1 cut(s)	880
BstV1I	GCAGC	5 cut(s)	30, 198, 391, 670, 698
BstV2I	GAAGAC	1 cut(s)	765
BstXI	CCANNNNNNTGG	1 cut(s)	826
Bsu15I	ATCGAT	1 cut(s)	462
Bsu36I	CCTNAGG	2 cut(s)	138, 348
BsuRI	GGCC	2 cut(s)	48, 254
BsuTUI	ATCGAT	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	252, 802
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	880
Cfr13I	GGNCC	1 cut(s)	253
ClaI	ATCGAT	1 cut(s)	462
CseI	GACGC	2 cut(s)	10, 24
Csp6I	GTAC	3 cut(s)	134, 520, 932
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviAII	CATG	3 cut(s)	44, 533, 826
CviQI	GTAC	3 cut(s)	134, 520, 932
DdeI	CTNAG	4 cut(s)	138, 348, 690, 720
DpnI	GATC	3 cut(s)	306, 313, 543
DpnII	GATC	3 cut(s)	304, 311, 541
DraI	TTTAAA	1 cut(s)	325
DraIII	CACNNNGTG	1 cut(s)	194
DriI	GACNNNNNGTC	1 cut(s)	20
Eam1104I	CTCTTC	3 cut(s)	143, 465, 532
Eam1105I	GACNNNNNGTC	1 cut(s)	20
EarI	CTCTTC	3 cut(s)	143, 465, 532
Ecl136II	GAGCTC	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	149
Eco32I	GATATC	1 cut(s)	726
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	557, 777
Eco81I	CCTNAGG	2 cut(s)	138, 348
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	726
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	3 cut(s)	47, 536, 829
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FatI	CATG	3 cut(s)	43, 532, 825
FauI	CCCGC	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	616
Fnu4HI	GCNGC	6 cut(s)	19, 212, 380, 578, 684, 687
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	6 cut(s)	19, 212, 380, 578, 684, 687
FspBI	CTAG	4 cut(s)	282, 503, 711, 791
GlaI	GCGC	1 cut(s)	879
GluI	GCNGC	6 cut(s)	19, 212, 380, 578, 684, 687
HaeIII	GGCC	2 cut(s)	48, 254
HgaI	GACGC	2 cut(s)	10, 24
HhaI	GCGC	1 cut(s)	880
Hin1II	CATG	3 cut(s)	47, 536, 829
Hin6I	GCGC	1 cut(s)	878
HinP1I	GCGC	1 cut(s)	878
HinfI	GANTC	7 cut(s)	115, 446, 601, 707, 716, 743, 889
HphI	GGTGA	4 cut(s)	157, 180, 441, 642
Hpy188I	TCNGA	6 cut(s)	14, 270, 309, 562, 730, 757
Hpy188III	TCNNGA	3 cut(s)	533, 704, 791
HpyAV	CCTTC	1 cut(s)	845
HpyCH4III	ACNGT	2 cut(s)	335, 519
HpyCH4V	TGCA	3 cut(s)	394, 686, 825
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 251, 784
HpyF3I	CTNAG	4 cut(s)	138, 348, 690, 720
Hsp92II	CATG	3 cut(s)	47, 536, 829
HspAI	GCGC	1 cut(s)	878
Kzo9I	GATC	3 cut(s)	304, 311, 541
LmnI	GCTCC	3 cut(s)	76, 237, 809
LpnPI	CCDG	9 cut(s)	102, 150, 236, 360, 399, 526, 717, 760, 786
Lsp1109I	GCAGC	5 cut(s)	30, 198, 391, 670, 698
LweI	GCATC	2 cut(s)	589, 913
MaeI	CTAG	4 cut(s)	282, 503, 711, 791
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	3 cut(s)	306, 313, 543
MboI	GATC	3 cut(s)	304, 311, 541
MboII	GAAGA	9 cut(s)	160, 211, 380, 408, 482, 519, 770, 894, 914
MfeI	CAATTG	1 cut(s)	936
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	9 cut(s)	58, 363, 485, 593, 674, 779, 869, 908, 936
MlyI	GAGTC	3 cut(s)	124, 595, 752
MnlI	CCTC	8 cut(s)	59, 85, 133, 136, 343, 604, 627, 689
MseI	TTAA	5 cut(s)	324, 548, 591, 657, 672
MslI	CAYNNNNRTG	2 cut(s)	813, 824
MspA1I	CMGCKG	1 cut(s)	577
MunI	CAATTG	1 cut(s)	936
Mva1269I	GAATGC	2 cut(s)	222, 699
MvnI	CGCG	1 cut(s)	880
MwoI	GCNNNNNNNGC	3 cut(s)	217, 251, 784
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	3 cut(s)	304, 311, 541
NlaIII	CATG	3 cut(s)	47, 536, 829
NlaIV	GGNNCC	2 cut(s)	805, 817
PagI	TCATGA	1 cut(s)	532
PctI	GAATGC	2 cut(s)	222, 699
PfeI	GAWTC	4 cut(s)	446, 707, 716, 889
PflMI	CCANNNNNTGG	1 cut(s)	941
PkrI	GCNGC	6 cut(s)	20, 213, 381, 579, 685, 688
PleI	GAGTC	3 cut(s)	123, 595, 751
PpsI	GAGTC	3 cut(s)	123, 595, 751
Psp124BI	GAGCTC	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	805, 817
PspPI	GGNCC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	688
RsaI	GTAC	3 cut(s)	135, 521, 933
RsaNI	GTAC	3 cut(s)	134, 520, 932
RseI	CAYNNNNRTG	2 cut(s)	813, 824
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	5 cut(s)	324, 548, 591, 657, 672
SatI	GCNGC	6 cut(s)	19, 212, 380, 578, 684, 687
Sau3AI	GATC	3 cut(s)	304, 311, 541
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	3 cut(s)	124, 595, 752
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	2 cut(s)	589, 913
SfcI	CTRYAG	1 cut(s)	684
SmiMI	CAYNNNNRTG	2 cut(s)	813, 824
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	9 cut(s)	58, 363, 485, 593, 674, 779, 869, 908, 936
SsiI	CCGC	3 cut(s)	169, 220, 577
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	4 cut(s)	282, 503, 711, 791
SstI	GAGCTC	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	335, 519
TaqI	TCGA	3 cut(s)	106, 462, 741
TasI	AATT	9 cut(s)	58, 363, 485, 593, 674, 779, 869, 908, 936
TauI	GCSGC	1 cut(s)	580
TfiI	GAWTC	4 cut(s)	446, 707, 716, 889
Tru1I	TTAA	5 cut(s)	324, 548, 591, 657, 672
Tru9I	TTAA	5 cut(s)	324, 548, 591, 657, 672
TseI	GCWGC	5 cut(s)	18, 211, 379, 683, 686
TspDTI	ATGAA	5 cut(s)	32, 50, 549, 577, 921
Van91I	CCANNNNNTGG	1 cut(s)	941
XapI	RAATTY	2 cut(s)	58, 908
XbaI	TCTAGA	1 cut(s)	790
XspI	CTAG	4 cut(s)	282, 503, 711, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.