Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002919

Physical Location & Seq

Genomic Coordinates Reverse (-)

3065501 .. 3068517

Gene Structure 3017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1027200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAACATTCATGCCCTCCATAGCAATTTCTGCTCTCTGCTCCCTCTTCAACTTCCTTCTCGAATGGAAAGTCATTTGTGGTATGTTTTGCCTGAGGAGGTGAAGAGTGAGGGCCTTTTGAATCGGTATTTCGAGCTTCTGTCACCGTCTGAGAGAGATAATGTTTTGGGCATGCGTGGGATTGAGCTCCAGAAAAGAGCATTGCTTGCCCGGGCGTTGGTACGCACTACGATATCGAGATATGTAGATCAGACAGACCATCGAGTTGATCCGAGATCCTTAAAGTTTAAAAAGAACAATCATGGGAAGCCTGAGGTAGAGTGGCAAATTGCAGATGGCTGGCGGCCACCACCGTTGCATTTCAACCTCTCTCACACTTCTTCCTTGATAGCTTGTGGTGTAACTGTGGATTCACCCATTGGAATAGATGTGGAAGACAAGCAGCGGAAGTTGAAGAACCATATTTTAGCTTTTGCTCGACGGTACTTTTCTTCTCATGAAGTGGAACATTTATCTTCTATTTCGGACATAGAAATTCAGCGTCAACAATTTATAAAATTATGGACTCTCAAGGAGGCATATGTGAAAGCATTGGGAAAGGGCTTCTCTGCTTCTCCGTTTAATACCTTCTCCATTCGATTGAGGGATGCAGCTAAGAGAGGCATCAATTTATCTGGGGACGTAGATTCTGAGATAACCGAAATAAGTGTTGAACCTTTTGGCCCCGTGAACCTCACAAGAAATTGGCAATTTTCGCTTCTAGAGTTGGCCGGTTCTCATTATGCTGCCATTTGTATGGAAAGACATAAAACCGTTGGAGGCGAAGAAAAAGCTCCGTTACAATTGACGGTGCGGAGAACTATTCCATTTGTTGAAGAAGAATGTGTTACAGGAACTGATGCGGCCGTACCAATAGGCGGATTGAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

311

Amino Acids

35.08

Weight (kDa)

7.74

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AASDHPPT_N	PF22624	42 - 130	6.5e-06	4'-phosphopantetheinyl transferase, N-terminal
ACPS	PF01648	139 - 227	9.4e-18	4'-phosphopantetheinyl transferase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02765 AT2G02765 AT2G02765 AT2G02765 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470
fragaria_vesca	FvH4_4g11630 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140
malus_domestica	MD12G1027200.v1.1 MD14G1027400.v1.1
prunus_persica	Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1
pyrus_communis	pycom12g02610
rosa_chinensis	RchiOBHm_Chr3g0474251
rosa_rugosa	Rorug03G0139700 Rorug03G0139700
rosa_samantha	Rh3AG190300 Rh3BG219400 Rh3CG214700 Rh3DG214900
rosa_wichuraiana	Rw3G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AciI	CCGC	5 cut(s)	343, 445, 853, 902, 918
AclWI	GGATC	2 cut(s)	263, 270
AcoI	YGGCCR	3 cut(s)	344, 768, 903
AcsI	RAATTY	1 cut(s)	534
AfaI	GTAC	3 cut(s)	222, 485, 909
AfiI	CCNNNNNNNGG	2 cut(s)	217, 917
AgsI	TTSAA	7 cut(s)	50, 121, 364, 454, 713, 875, 925
AluBI	AGCT	6 cut(s)	136, 187, 392, 470, 653, 833
AluI	AGCT	6 cut(s)	136, 187, 392, 470, 653, 833
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	2 cut(s)	263, 270
AlwNI	CAGNNNCTG	1 cut(s)	896
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	5 cut(s)	112, 344, 721, 768, 903
ApeKI	GCWGC	3 cut(s)	442, 650, 785
ApoI	RAATTY	1 cut(s)	534
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AspS9I	GGNCC	2 cut(s)	112, 722
AsuC2I	CCSGG	2 cut(s)	211, 212
AsuHPI	GGTGA	3 cut(s)	112, 135, 405
AvaI	CYCGRG	1 cut(s)	210
AxyI	CCTNAGG	2 cut(s)	93, 312
BanII	GRGCYC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	454, 662, 772
BccI	CCATC	2 cut(s)	267, 329
BceAI	ACGGC	1 cut(s)	890
BcnI	CCSGG	2 cut(s)	211, 212
BfaI	CTAG	1 cut(s)	761
BisI	GCNGC	5 cut(s)	344, 443, 651, 786, 903
BlsI	GCNGC	5 cut(s)	345, 444, 652, 787, 904
Bme1390I	CCNGG	2 cut(s)	211, 212
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	2 cut(s)	112, 722
BmiI	GGNNCC	1 cut(s)	724
BmrFI	CCNGG	2 cut(s)	211, 212
BmsI	GCATC	3 cut(s)	637, 672, 889
BpiI	GAAGAC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	2 cut(s)	211, 212
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 917
Bse118I	RCCGGY	1 cut(s)	770
Bse21I	CCTNAGG	2 cut(s)	93, 312
Bse3DI	GCAATG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	2 cut(s)	217, 917
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	4 cut(s)	84, 141, 303, 681
BseRI	GAGGAG	1 cut(s)	110
BseX3I	CGGCCG	1 cut(s)	903
BseXI	GCAGC	3 cut(s)	454, 662, 772
Bsh1285I	CGRYCG	1 cut(s)	906
BshFI	GGCC	5 cut(s)	114, 346, 723, 770, 905
BsiEI	CGRYCG	1 cut(s)	906
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	211, 771
BslFI	GGGAC	1 cut(s)	692
BslI	CCNNNNNNNGG	2 cut(s)	217, 917
BsmFI	GGGAC	1 cut(s)	692
BsnI	GGCC	5 cut(s)	114, 346, 723, 770, 905
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	247, 268, 275
BspACI	CCGC	5 cut(s)	343, 445, 853, 902, 918
BspANI	GGCC	5 cut(s)	114, 346, 723, 770, 905
BspCNI	CTCAG	4 cut(s)	85, 142, 304, 682
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	724
BspPI	GGATC	2 cut(s)	263, 270
BsrDI	GCAATG	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	770
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	247, 268, 275
Bst4CI	ACNGT	6 cut(s)	147, 354, 406, 483, 814, 850
Bst6I	CTCTTC	2 cut(s)	51, 98
BstAPI	GCANNNNNTGC	2 cut(s)	30, 206
BstC8I	GCNNGC	3 cut(s)	173, 207, 341
BstDEI	CTNAG	5 cut(s)	93, 150, 312, 654, 690
BstF5I	GGATG	1 cut(s)	652
BstKTI	GATC	3 cut(s)	250, 271, 278
BstMBI	GATC	3 cut(s)	247, 268, 275
BstMCI	CGRYCG	1 cut(s)	906
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 206, 754
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	209, 210
BstV1I	GCAGC	3 cut(s)	454, 662, 772
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	275
BstZI	CGGCCG	1 cut(s)	903
Bsu36I	CCTNAGG	2 cut(s)	93, 312
BsuRI	GGCC	5 cut(s)	114, 346, 723, 770, 905
BtsCI	GGATG	1 cut(s)	652
Cac8I	GCNNGC	3 cut(s)	173, 207, 341
CaiI	CAGNNNCTG	1 cut(s)	896
CciI	TCATGA	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	2 cut(s)	112, 722
Cfr9I	CCCGGG	1 cut(s)	210
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	3 cut(s)	221, 484, 908
CspCI	CAANNNNNGTGG	2 cut(s)	336, 371
CviAII	CATG	4 cut(s)	11, 172, 302, 497
CviQI	GTAC	3 cut(s)	221, 484, 908
DdeI	CTNAG	5 cut(s)	93, 150, 312, 654, 690
DpnI	GATC	3 cut(s)	249, 270, 277
DpnII	GATC	3 cut(s)	247, 268, 275
DraI	TTTAAA	1 cut(s)	289
EaeI	YGGCCR	3 cut(s)	344, 768, 903
EagI	CGGCCG	1 cut(s)	903
Eam1104I	CTCTTC	2 cut(s)	51, 98
EarI	CTCTTC	2 cut(s)	51, 98
EciI	GGCGGA	1 cut(s)	933
Ecl136II	GAGCTC	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	903
Eco24I	GRGCYC	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	234
Eco52I	CGGCCG	1 cut(s)	903
Eco53kI	GAGCTC	1 cut(s)	187
Eco81I	CCTNAGG	2 cut(s)	93, 312
Eco88I	CYCGRG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRV	GATATC	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	4 cut(s)	14, 175, 305, 500
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	4 cut(s)	10, 171, 301, 496
FauNDI	CATATG	1 cut(s)	580
Fnu4HI	GCNGC	5 cut(s)	344, 443, 651, 786, 903
FokI	GGATG	1 cut(s)	659
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	5 cut(s)	344, 443, 651, 786, 903
FspBI	CTAG	1 cut(s)	761
GluI	GCNGC	5 cut(s)	344, 443, 651, 786, 903
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	5 cut(s)	114, 346, 723, 770, 905
HapII	CCGG	2 cut(s)	211, 771
HgaI	GACGC	1 cut(s)	530
Hin1II	CATG	4 cut(s)	14, 175, 305, 500
HincII	GTYRAC	1 cut(s)	545
HindII	GTYRAC	1 cut(s)	545
HinfI	GANTC	4 cut(s)	121, 410, 565, 686
HpaII	CCGG	2 cut(s)	211, 771
HphI	GGTGA	3 cut(s)	112, 135, 405
Hpy166II	GTNNAC	2 cut(s)	545, 730
Hpy188I	TCNGA	5 cut(s)	151, 252, 273, 526, 691
Hpy188III	TCNNGA	5 cut(s)	60, 190, 237, 497, 761
Hpy8I	GTNNAC	2 cut(s)	545, 730
Hpy99I	CGWCG	1 cut(s)	483
HpyAV	CCTTC	2 cut(s)	66, 637
HpyCH4III	ACNGT	6 cut(s)	147, 354, 406, 483, 814, 850
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	3 cut(s)	332, 358, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 206, 754
HpyF3I	CTNAG	5 cut(s)	93, 150, 312, 654, 690
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	4 cut(s)	14, 175, 305, 500
Kzo9I	GATC	3 cut(s)	247, 268, 275
LmnI	GCTCC	3 cut(s)	45, 192, 838
LpnPI	CCDG	8 cut(s)	105, 203, 224, 324, 325, 660, 784, 876
Lsp1109I	GCAGC	3 cut(s)	454, 662, 772
LweI	GCATC	3 cut(s)	637, 672, 889
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	4 cut(s)	141, 400, 837, 886
MalI	GATC	3 cut(s)	249, 270, 277
MboI	GATC	3 cut(s)	247, 268, 275
MfeI	CAATTG	1 cut(s)	842
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	1 cut(s)	796
MseI	TTAA	3 cut(s)	281, 288, 621
MslI	CAYNNNNRTG	1 cut(s)	794
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	2 cut(s)	211, 771
MspR9I	CCNGG	2 cut(s)	211, 212
MunI	CAATTG	1 cut(s)	842
MwoI	GCNNNNNNNGC	3 cut(s)	30, 206, 754
NciI	CCSGG	2 cut(s)	211, 212
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	3 cut(s)	247, 268, 275
NlaIII	CATG	4 cut(s)	14, 175, 305, 500
NlaIV	GGNNCC	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	175
PaeI	GCATGC	1 cut(s)	175
PagI	TCATGA	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	121, 410, 686
PkrI	GCNGC	5 cut(s)	345, 444, 652, 787, 904
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PsiI	TTATAA	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	724
PspPI	GGNCC	2 cut(s)	112, 722
PstNI	CAGNNNCTG	1 cut(s)	896
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	3 cut(s)	222, 485, 909
RsaNI	GTAC	3 cut(s)	221, 484, 908
RseI	CAYNNNNRTG	1 cut(s)	794
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	3 cut(s)	281, 288, 621
SatI	GCNGC	5 cut(s)	344, 443, 651, 786, 903
Sau3AI	GATC	3 cut(s)	247, 268, 275
Sau96I	GGNCC	2 cut(s)	112, 722
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	211, 212
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	3 cut(s)	637, 672, 889
SmaI	CCCGGG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
SphI	GCATGC	1 cut(s)	175
SrfI	GCCCGGGC	1 cut(s)	212
SsiI	CCGC	5 cut(s)	343, 445, 853, 902, 918
SspMI	CTAG	1 cut(s)	761
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	209, 210
TaaI	ACNGT	6 cut(s)	147, 354, 406, 483, 814, 850
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	6 cut(s)	61, 132, 236, 262, 478, 637
TauI	GCSGC	2 cut(s)	346, 905
TfiI	GAWTC	3 cut(s)	121, 410, 686
Tru1I	TTAA	3 cut(s)	281, 288, 621
Tru9I	TTAA	3 cut(s)	281, 288, 621
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	3 cut(s)	442, 650, 785
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	17, 513
TspGWI	ACGGA	2 cut(s)	606, 825
TspMI	CCCGGG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	534
XbaI	TCTAGA	1 cut(s)	760
XceI	RCATGY	1 cut(s)	175
XmaI	CCCGGG	1 cut(s)	210
XspI	CTAG	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.