Rw3G017360
ERF Family

4'-phosphopantetheinyl transferase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002919
Physical Location & Seq
Reverse (-)
18752118 .. 18754394
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017360.1

Sequence Viewer

Length: 921 bp
ATGCTTTTATTCAGACGTAGAGCCTTTTTCAGAATTATGAATATTCATGGCCTCCAAAGCCATTTTTGCTCTGTTCCTTCAACTCTGTCACCTGTTCAACTCCCAACTCGAATGGAGAGTCATTTGTGGTATGTTTTACCTGAGGAGGTGAAGAGTGAAACCCTTTTGAAACGGTATTTTGAGCTTCTCTCACCTTGTGAGAAGACAAATGTGCTGCGAATGCGCGGGGATGAGCTCCGAAAGAGAGCCCTGCTGGCCCGTGCGTTGGTTCGGACTACCATTGCTAGATATACAAACGATAGAGTTGATCCGAGGTCATTGAACTTTAAAAAGAACGGTTATGGGAAGCCTGAGGTAGACTGGCAAATTGCAGATGACTGGCAGCCACCTGCACTGCAATTCAACATCTCACACACTTCTTCCTTGATAGCTTGTGGAGTAGCTGTTGATTCACCAGTAAAAACAGCGAAAGTTGAAGCACCATATTCTGGCTTTTGCCAACGGTACTTCTCTACTCATGAAGTGGAACATTTAACTTCTATCTCAGACATTGAAATTCAGCGGCAACAGTTCCTTAAACTGTGGACTCTCAAGGGCTTCTCTGCTTCACCTTTTAAGACCTTTACCATTAGATTGAAGGCTGCTAAGAGAGGCATTCCTCTATCTGAGGAATTGGATTCTAAGATGTCCGAAATAAGTGTCGAGTCTCTTGGCTCTGAAGATCTTACAAAGAACTGGCAGTTTTTGCTTCTAGAGTTGGCTGGTTCCCATTATGGTGCCATTTGCATGGAAAAACATAACACTATAGGAAAAGGAAATGTTCCCATAAAATTGACAGCGCGAAGAACGATCCCACTTGTTGAAGATGAATGTGTTATAGGAACTTGTGCTGTTGTACCAATAGGTGGATTGACTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 map00770
Pfam Domains
Protein Families
ACPS

Protein Analysis

306

Amino Acids

34.75

Weight (kDa)

9.11

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AASDHPPT_N PF22624 56 - 143 1.1e-07 4'-phosphopantetheinyl transferase, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 397
Acc36I ACCTGC 1 cut(s) 397
AccB1I GGYRCC 1 cut(s) 776
AccB7I CCANNNNNTGG 2 cut(s) 488, 905
AccI GTMKAC 1 cut(s) 357
AccII CGCG 2 cut(s) 225, 841
AciI CCGC 2 cut(s) 225, 562
AclWI GGATC 2 cut(s) 302, 844
AcsI RAATTY 1 cut(s) 555
AcuI CTGAAG 1 cut(s) 738
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 2 cut(s) 506, 897
AfiI CCNNNNNNNGG 3 cut(s) 265, 488, 905
AgsI TTSAA 9 cut(s) 81, 98, 169, 322, 403, 476, 554, 637, 863
AluBI AGCT 4 cut(s) 184, 235, 431, 443
AluI AGCT 4 cut(s) 184, 235, 431, 443
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 711
AlwI GGATC 2 cut(s) 302, 844
AoxI GGCC 2 cut(s) 49, 255
ApeKI GCWGC 3 cut(s) 214, 382, 641
ApoI RAATTY 1 cut(s) 555
ArsI GACNNNNNNTTYG 4 cut(s) 103, 135, 684, 716
AspLEI GCGC 2 cut(s) 225, 841
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 5 cut(s) 81, 160, 183, 444, 600
AxyI CCTNAGG 2 cut(s) 141, 351
BanI GGYRCC 1 cut(s) 776
BanII GRGCYC 2 cut(s) 237, 250
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 201, 394, 628
BcoDI GTCTC 1 cut(s) 711
BfaI CTAG 2 cut(s) 285, 752
BfmI CTRYAG 1 cut(s) 804
BfuAI ACCTGC 1 cut(s) 397
BglI GCCNNNNNGGC 1 cut(s) 254
BglII AGATCT 1 cut(s) 721
BisI GCNGC 4 cut(s) 215, 383, 563, 642
BlsI GCNGC 4 cut(s) 216, 384, 564, 643
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 766, 778
BpiI GAAGAC 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpuEI CTTGAG 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 488, 905
Bse1I ACTGG 4 cut(s) 365, 383, 455, 740
Bse21I CCTNAGG 2 cut(s) 141, 351
Bse3DI GCAATG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 3 cut(s) 265, 488, 905
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 4 cut(s) 132, 342, 558, 657
BseNI ACTGG 4 cut(s) 365, 383, 455, 740
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 3 cut(s) 201, 394, 628
BsgI GTGCAG 1 cut(s) 375
Bsh1236I CGCG 2 cut(s) 225, 841
BshFI GGCC 2 cut(s) 51, 257
BshNI GGYRCC 1 cut(s) 776
BsiHKAI GWGCWC 1 cut(s) 237
BslI CCNNNNNNNGG 3 cut(s) 265, 488, 905
BsmAI GTCTC 1 cut(s) 711
BsmI GAATGC 2 cut(s) 225, 654
BsnI GGCC 2 cut(s) 51, 257
Bsp1286I GDGCHC 2 cut(s) 237, 250
Bsp143I GATC 3 cut(s) 307, 721, 849
BspACI CCGC 2 cut(s) 225, 562
BspANI GGCC 2 cut(s) 51, 257
BspCNI CTCAG 4 cut(s) 133, 343, 557, 658
BspFNI CGCG 2 cut(s) 225, 841
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 2 cut(s) 766, 778
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 2 cut(s) 302, 844
BspT107I GGYRCC 1 cut(s) 776
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 4 cut(s) 365, 383, 455, 740
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 3 cut(s) 307, 721, 849
Bst4CI ACNGT 5 cut(s) 174, 338, 504, 570, 582
Bst6I CTCTTC 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 745
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 6 cut(s) 141, 351, 544, 645, 666, 681
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 2 cut(s) 225, 841
BstHHI GCGC 2 cut(s) 225, 841
BstKTI GATC 3 cut(s) 310, 724, 852
BstMAI GTCTC 1 cut(s) 711
BstMBI GATC 3 cut(s) 307, 721, 849
BstMWI GCNNNNNNNGC 5 cut(s) 57, 66, 220, 254, 745
BstSFI CTRYAG 1 cut(s) 804
BstUI CGCG 2 cut(s) 225, 841
BstV1I GCAGC 3 cut(s) 201, 394, 628
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 721
BstXI CCANNNNNNTGG 1 cut(s) 787
BstYI RGATCY 1 cut(s) 721
Bsu36I CCTNAGG 2 cut(s) 141, 351
BsuRI GGCC 2 cut(s) 51, 257
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 1 cut(s) 392
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 255
CciI TCATGA 1 cut(s) 517
CfoI GCGC 2 cut(s) 225, 841
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 505, 896
CviAII CATG 3 cut(s) 47, 518, 787
CviQI GTAC 2 cut(s) 505, 896
DdeI CTNAG 6 cut(s) 141, 351, 544, 645, 666, 681
DpnI GATC 3 cut(s) 309, 723, 851
DpnII GATC 3 cut(s) 307, 721, 849
DraI TTTAAA 1 cut(s) 328
DraIII CACNNNGTG 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 2 cut(s) 237, 250
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 738
Eco81I CCTNAGG 2 cut(s) 141, 351
EcoICRI GAGCTC 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 237, 250
FaeI CATG 3 cut(s) 50, 521, 790
FatI CATG 3 cut(s) 46, 517, 786
FauI CCCGC 1 cut(s) 218
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 4 cut(s) 215, 383, 563, 642
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 2 cut(s) 237, 250
Fsp4HI GCNGC 4 cut(s) 215, 383, 563, 642
FspBI CTAG 2 cut(s) 285, 752
GlaI GCGC 2 cut(s) 224, 840
GluI GCNGC 4 cut(s) 215, 383, 563, 642
HaeIII GGCC 2 cut(s) 51, 257
HhaI GCGC 2 cut(s) 225, 841
Hin1II CATG 3 cut(s) 50, 521, 790
Hin6I GCGC 2 cut(s) 223, 839
HinP1I GCGC 2 cut(s) 223, 839
HinfI GANTC 5 cut(s) 118, 449, 586, 677, 704
HphI GGTGA 5 cut(s) 81, 160, 183, 444, 600
Hpy166II GTNNAC 2 cut(s) 358, 585
Hpy188I TCNGA 9 cut(s) 14, 32, 239, 273, 312, 547, 667, 691, 718
Hpy188III TCNNGA 2 cut(s) 518, 752
Hpy8I GTNNAC 2 cut(s) 358, 585
HpyAV CCTTC 2 cut(s) 87, 631
HpyCH4III ACNGT 5 cut(s) 174, 338, 504, 570, 582
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 4 cut(s) 371, 392, 397, 786
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 66, 220, 254, 745
HpyF3I CTNAG 6 cut(s) 141, 351, 544, 645, 666, 681
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 3 cut(s) 50, 521, 790
HspAI GCGC 2 cut(s) 223, 839
Kzo9I GATC 3 cut(s) 307, 721, 849
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 3 cut(s) 201, 394, 628
MaeI CTAG 2 cut(s) 285, 752
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 87
MalI GATC 3 cut(s) 309, 723, 851
MboI GATC 3 cut(s) 307, 721, 849
MboII GAAGA 6 cut(s) 163, 214, 411, 731, 855, 875
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 2 cut(s) 237, 250
MluCI AATT 6 cut(s) 33, 366, 398, 555, 671, 830
MlyI GAGTC 3 cut(s) 127, 580, 713
MnlI CCTC 8 cut(s) 62, 136, 139, 306, 346, 644, 661, 669
MseI TTAA 4 cut(s) 327, 533, 576, 615
MslI CAYNNNNRTG 2 cut(s) 774, 785
MspA1I CMGCKG 1 cut(s) 562
Mva1269I GAATGC 2 cut(s) 225, 654
MvnI CGCG 2 cut(s) 225, 841
MwoI GCNNNNNNNGC 5 cut(s) 57, 66, 220, 254, 745
NdeII GATC 3 cut(s) 307, 721, 849
NlaIII CATG 3 cut(s) 50, 521, 790
NlaIV GGNNCC 2 cut(s) 766, 778
NmuCI GTSAC 1 cut(s) 87
PagI TCATGA 1 cut(s) 517
PaqCI CACCTGC 1 cut(s) 397
PctI GAATGC 2 cut(s) 225, 654
PfeI GAWTC 2 cut(s) 449, 677
PflMI CCANNNNNTGG 2 cut(s) 488, 905
PkrI GCNGC 4 cut(s) 216, 384, 564, 643
PleI GAGTC 3 cut(s) 126, 580, 712
PpsI GAGTC 3 cut(s) 126, 580, 712
Psp124BI GAGCTC 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 766, 778
PspPI GGNCC 1 cut(s) 256
PsuI RGATCY 1 cut(s) 721
RsaI GTAC 2 cut(s) 506, 897
RsaNI GTAC 2 cut(s) 505, 896
RseI CAYNNNNRTG 2 cut(s) 774, 785
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 4 cut(s) 327, 533, 576, 615
SatI GCNGC 4 cut(s) 215, 383, 563, 642
Sau3AI GATC 3 cut(s) 307, 721, 849
Sau96I GGNCC 1 cut(s) 256
SchI GAGTC 3 cut(s) 127, 580, 713
SduI GDGCHC 2 cut(s) 237, 250
SfcI CTRYAG 1 cut(s) 804
SmiMI CAYNNNNRTG 2 cut(s) 774, 785
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 6 cut(s) 33, 366, 398, 555, 671, 830
SsiI CCGC 2 cut(s) 225, 562
SspI AATATT 1 cut(s) 43
SspMI CTAG 2 cut(s) 285, 752
SstI GAGCTC 1 cut(s) 237
TaaI ACNGT 5 cut(s) 174, 338, 504, 570, 582
TaiI ACGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 109, 702
TasI AATT 6 cut(s) 33, 366, 398, 555, 671, 830
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 2 cut(s) 449, 677
Tru1I TTAA 4 cut(s) 327, 533, 576, 615
Tru9I TTAA 4 cut(s) 327, 533, 576, 615
TscAI CASTG 1 cut(s) 399
TseFI GTSAC 1 cut(s) 87
TseI GCWGC 3 cut(s) 214, 382, 641
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 4 cut(s) 35, 53, 534, 882
TspRI CASTG 1 cut(s) 399
Van91I CCANNNNNTGG 2 cut(s) 488, 905
XapI RAATTY 1 cut(s) 555
XbaI TCTAGA 1 cut(s) 751
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 2 cut(s) 285, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.