Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002919

Physical Location & Seq

Genomic Coordinates Reverse (-)

19919287 .. 19922215

Gene Structure 2929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43989

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTTTTTATTCAGACGCAGAGCCTTTTTCAGAATTATGAATATTCATGGCCTCCAAAGCCATTTTTGCTCTGTTCCTTCTTCAACTCTGTTACCTGTTCAACTCCCAACTCGAATGGAGAGTCATTTGTGGTATGTTTTACCTGAGGAGGTGAAGAGTGAAACCCTTTTGAAACGGTATTTTGAGCTTCTCTCACCTTGTGAGAAGACAAATGTGCTGCGAATGCGCGGCGATGAGCTCCGAAAGAGAGCCCTGCTGGCCCGTGCGTTGGTTCGGACTACCATTGCTAGATATACAAACGATAGAGTTGATCCGAGGTCATTGAACTTTAAAAAGAACGGTTATGGGAAGCCTGAGGTAGACTGGCAAATTGCAGATCACTGGCAGCCACCTGCACTGCAATTCAACATCTCACACACTTCTTCCTTGATAGCTTGTGGAGTAGCTGTTGATTCACCAATCGGTATCGATGTGGAAGAGAAACAGCGAAAGTTGAAGCACCATATTCTAGCTTTTGCCAAACGATACTTCTCTACTCATGAAGTGGAACATTTAACTTCTATCTCAGACATTGAAGTTCAGCGGCAGCAGTTCCTTAAACTGTGGACTCTCAAGGAGGCATATGTGAAAGCATTGGGGAGGGGCTTCTCTGCTTCACCTTTTAAGACCTTTACCATTAGATTGAAGGCTGCAGCTAGGAGAGGCATTCCTCTATCTGAGGAATTGGATTCTCAGATATCTGAAATAAGTGTCGAGTCTCTTGGCTCTGAAGATCTTACAAAGAACTGGCAGTTTTTGCCTCTAGAGTTGGCTGGTTCCCATTATGGTGCCATTTGCATGGAAAAACATAACACTATAGGAAAAGGAAATGTTCCCATAAAATTGACAGCGCGAAGAACGATCCCACTTGTTGAAGATGAATGTGTTATAGGAACTGATCCTGTTGTACCAATAGGTGGATTGACTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 map00770

Pfam Domains

Protein Families

ACPS

Protein Analysis

323

Amino Acids

36.84

Weight (kDa)

9.3

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AASDHPPT_N	PF22624	57 - 144	1.1e-07	4'-phosphopantetheinyl transferase, N-terminal
ACPS	PF01648	153 - 236	4.4e-17	4'-phosphopantetheinyl transferase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02765 AT2G02765 AT2G02765 AT2G02765 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470 AT3G11470
fragaria_vesca	FvH4_4g11630 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140 FvH4_6g19140
malus_domestica	MD12G1027200.v1.1 MD14G1027400.v1.1
prunus_persica	Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1 Prupe.7G104300_v2.0.a1
pyrus_communis	pycom12g02610
rosa_chinensis	RchiOBHm_Chr3g0474251
rosa_rugosa	Rorug03G0139700 Rorug03G0139700
rosa_samantha	Rh3AG190300 Rh3BG219400 Rh3CG214700 Rh3DG214900
rosa_wichuraiana	Rw3G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc36I	ACCTGC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	827
AccB7I	CCANNNNNTGG	1 cut(s)	956
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	2 cut(s)	228, 892
AciI	CCGC	2 cut(s)	228, 583
AclWI	GGATC	3 cut(s)	305, 895, 932
AcuI	CTGAAG	1 cut(s)	789
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	948
AfiI	CCNNNNNNNGG	2 cut(s)	268, 956
AgsI	TTSAA	9 cut(s)	84, 101, 172, 325, 406, 496, 575, 685, 914
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	6 cut(s)	187, 238, 434, 446, 512, 695
AluI	AGCT	6 cut(s)	187, 238, 434, 446, 512, 695
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	762
AlwI	GGATC	3 cut(s)	305, 895, 932
AoxI	GGCC	2 cut(s)	49, 258
ApeKI	GCWGC	5 cut(s)	217, 385, 586, 689, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspLEI	GCGC	2 cut(s)	228, 892
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	4 cut(s)	163, 186, 447, 648
AxyI	CCTNAGG	2 cut(s)	144, 354
BanI	GGYRCC	1 cut(s)	827
BanII	GRGCYC	2 cut(s)	240, 253
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	5 cut(s)	204, 397, 598, 676, 704
BcoDI	GTCTC	1 cut(s)	762
BfaI	CTAG	4 cut(s)	288, 509, 696, 803
BfmI	CTRYAG	2 cut(s)	690, 855
BfuAI	ACCTGC	1 cut(s)	400
BglI	GCCNNNNNGGC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	7 cut(s)	218, 229, 386, 584, 587, 690, 693
BlsI	GCNGC	7 cut(s)	219, 230, 387, 585, 588, 691, 694
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	817, 829
BpiI	GAAGAC	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpuEI	CTTGAG	1 cut(s)	596
Bsa29I	ATCGAT	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	314
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 956
Bse1I	ACTGG	3 cut(s)	368, 386, 791
Bse21I	CCTNAGG	2 cut(s)	144, 354
Bse3DI	GCAATG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	314
BseLI	CCNNNNNNNGG	2 cut(s)	268, 956
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	5 cut(s)	135, 345, 579, 708, 746
BseNI	ACTGG	3 cut(s)	368, 386, 791
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	5 cut(s)	204, 397, 598, 676, 704
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	2 cut(s)	228, 892
BshFI	GGCC	2 cut(s)	51, 260
BshNI	GGYRCC	1 cut(s)	827
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	268, 956
BsmAI	GTCTC	1 cut(s)	762
BsmI	GAATGC	2 cut(s)	228, 705
BsnI	GGCC	2 cut(s)	51, 260
Bsp1286I	GDGCHC	2 cut(s)	240, 253
Bsp143I	GATC	5 cut(s)	310, 376, 772, 900, 937
BspACI	CCGC	2 cut(s)	228, 583
BspANI	GGCC	2 cut(s)	51, 260
BspCNI	CTCAG	5 cut(s)	136, 346, 578, 709, 745
BspDI	ATCGAT	1 cut(s)	468
BspFNI	CGCG	2 cut(s)	228, 892
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	817, 829
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	3 cut(s)	305, 895, 932
BspT107I	GGYRCC	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	3 cut(s)	368, 386, 791
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	5 cut(s)	310, 376, 772, 900, 937
Bst4CI	ACNGT	3 cut(s)	177, 341, 603
Bst6I	CTCTTC	2 cut(s)	149, 471
BstAPI	GCANNNNNTGC	1 cut(s)	796
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	5 cut(s)	144, 354, 565, 717, 732
BstFNI	CGCG	2 cut(s)	228, 892
BstHHI	GCGC	2 cut(s)	228, 892
BstKTI	GATC	5 cut(s)	313, 379, 775, 903, 940
BstMAI	GTCTC	1 cut(s)	762
BstMBI	GATC	5 cut(s)	310, 376, 772, 900, 937
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 66, 223, 257, 796
BstSFI	CTRYAG	2 cut(s)	690, 855
BstUI	CGCG	2 cut(s)	228, 892
BstV1I	GCAGC	5 cut(s)	204, 397, 598, 676, 704
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	772
BstXI	CCANNNNNNTGG	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	772
Bsu15I	ATCGAT	1 cut(s)	468
Bsu36I	CCTNAGG	2 cut(s)	144, 354
BsuRI	GGCC	2 cut(s)	51, 260
BsuTUI	ATCGAT	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	379, 395
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	2 cut(s)	228, 892
Cfr13I	GGNCC	1 cut(s)	259
ClaI	ATCGAT	1 cut(s)	468
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	947
CviAII	CATG	3 cut(s)	47, 539, 838
CviQI	GTAC	1 cut(s)	947
DdeI	CTNAG	5 cut(s)	144, 354, 565, 717, 732
DpnI	GATC	5 cut(s)	312, 378, 774, 902, 939
DpnII	GATC	5 cut(s)	310, 376, 772, 900, 937
DraI	TTTAAA	1 cut(s)	331
DraIII	CACNNNGTG	1 cut(s)	200
Eam1104I	CTCTTC	2 cut(s)	149, 471
EarI	CTCTTC	2 cut(s)	149, 471
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	2 cut(s)	240, 253
Eco32I	GATATC	1 cut(s)	738
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	789
Eco81I	CCTNAGG	2 cut(s)	144, 354
EcoICRI	GAGCTC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	738
EcoT38I	GRGCYC	2 cut(s)	240, 253
FaeI	CATG	3 cut(s)	50, 542, 841
FatI	CATG	3 cut(s)	46, 538, 837
FauNDI	CATATG	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	7 cut(s)	218, 229, 386, 584, 587, 690, 693
FriOI	GRGCYC	2 cut(s)	240, 253
Fsp4HI	GCNGC	7 cut(s)	218, 229, 386, 584, 587, 690, 693
FspBI	CTAG	4 cut(s)	288, 509, 696, 803
GlaI	GCGC	2 cut(s)	227, 891
GluI	GCNGC	7 cut(s)	218, 229, 386, 584, 587, 690, 693
HaeIII	GGCC	2 cut(s)	51, 260
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	2 cut(s)	228, 892
Hin1II	CATG	3 cut(s)	50, 542, 841
Hin6I	GCGC	2 cut(s)	226, 890
HinP1I	GCGC	2 cut(s)	226, 890
HinfI	GANTC	5 cut(s)	121, 452, 607, 728, 755
HphI	GGTGA	4 cut(s)	163, 186, 447, 648
Hpy166II	GTNNAC	2 cut(s)	361, 606
Hpy188III	TCNNGA	2 cut(s)	539, 803
Hpy8I	GTNNAC	2 cut(s)	361, 606
HpyAV	CCTTC	2 cut(s)	87, 679
HpyCH4III	ACNGT	3 cut(s)	177, 341, 603
HpyCH4V	TGCA	5 cut(s)	374, 395, 400, 692, 837
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 66, 223, 257, 796
HpyF3I	CTNAG	5 cut(s)	144, 354, 565, 717, 732
Hsp92II	CATG	3 cut(s)	50, 542, 841
HspAI	GCGC	2 cut(s)	226, 890
Kzo9I	GATC	5 cut(s)	310, 376, 772, 900, 937
LmnI	GCTCC	1 cut(s)	243
Lsp1109I	GCAGC	5 cut(s)	204, 397, 598, 676, 704
MaeI	CTAG	4 cut(s)	288, 509, 696, 803
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	5 cut(s)	312, 378, 774, 902, 939
MboI	GATC	5 cut(s)	310, 376, 772, 900, 937
MboII	GAAGA	8 cut(s)	72, 166, 217, 414, 488, 782, 906, 926
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	2 cut(s)	240, 253
MluCI	AATT	5 cut(s)	33, 369, 401, 722, 881
MlyI	GAGTC	3 cut(s)	130, 601, 764
MseI	TTAA	4 cut(s)	330, 554, 597, 663
MslI	CAYNNNNRTG	2 cut(s)	825, 836
MspA1I	CMGCKG	1 cut(s)	583
Mva1269I	GAATGC	2 cut(s)	228, 705
MvnI	CGCG	2 cut(s)	228, 892
MwoI	GCNNNNNNNGC	5 cut(s)	57, 66, 223, 257, 796
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	5 cut(s)	310, 376, 772, 900, 937
NlaIII	CATG	3 cut(s)	50, 542, 841
NlaIV	GGNNCC	2 cut(s)	817, 829
PagI	TCATGA	1 cut(s)	538
PaqCI	CACCTGC	1 cut(s)	400
PctI	GAATGC	2 cut(s)	228, 705
PfeI	GAWTC	2 cut(s)	452, 728
PflMI	CCANNNNNTGG	1 cut(s)	956
PkrI	GCNGC	7 cut(s)	219, 230, 387, 585, 588, 691, 694
PleI	GAGTC	3 cut(s)	129, 601, 763
PpsI	GAGTC	3 cut(s)	129, 601, 763
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	817, 829
PspPI	GGNCC	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	694
PsuI	RGATCY	1 cut(s)	772
RsaI	GTAC	1 cut(s)	948
RsaNI	GTAC	1 cut(s)	947
RseI	CAYNNNNRTG	2 cut(s)	825, 836
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	330, 554, 597, 663
SatI	GCNGC	7 cut(s)	218, 229, 386, 584, 587, 690, 693
Sau3AI	GATC	5 cut(s)	310, 376, 772, 900, 937
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	3 cut(s)	130, 601, 764
SduI	GDGCHC	2 cut(s)	240, 253
SfcI	CTRYAG	2 cut(s)	690, 855
SmiMI	CAYNNNNRTG	2 cut(s)	825, 836
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	5 cut(s)	33, 369, 401, 722, 881
SsiI	CCGC	2 cut(s)	228, 583
SspI	AATATT	1 cut(s)	43
SspMI	CTAG	4 cut(s)	288, 509, 696, 803
SstI	GAGCTC	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	177, 341, 603
TaqI	TCGA	3 cut(s)	112, 468, 753
TasI	AATT	5 cut(s)	33, 369, 401, 722, 881
TauI	GCSGC	2 cut(s)	231, 586
TfiI	GAWTC	2 cut(s)	452, 728
Tru1I	TTAA	4 cut(s)	330, 554, 597, 663
Tru9I	TTAA	4 cut(s)	330, 554, 597, 663
TscAI	CASTG	2 cut(s)	386, 402
TseI	GCWGC	5 cut(s)	217, 385, 586, 689, 692
TspDTI	ATGAA	4 cut(s)	35, 53, 555, 933
TspRI	CASTG	2 cut(s)	386, 402
Van91I	CCANNNNNTGG	1 cut(s)	956
XbaI	TCTAGA	1 cut(s)	802
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	4 cut(s)	288, 509, 696, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.