Rh3BG219400
ERF Family

4'-phosphopantetheinyl transferase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002919
Physical Location & Seq
Reverse (-)
19754274 .. 19759987
5714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG219400.1

Sequence Viewer

Length: 624 bp
ATGTTTTTATTCAGACGCAGAGCCTTTTTCAGAATTATGAATATTCATGGCCTCCAAAGCCATTTTTGCTCTGTTCCTTCTTCAACTCTGTTACCTGTTCAACTCCCAACTCGAATGGAGAGTCATTTGTGGTATGTTTTACCTGAGGAGGTGAAGAGTGAAACCCTTTTGAAACGGTATTTTGAGCTTCTCTCACCTTGTGAGAAGACAAATGTGCTGCGAATGCGCGGCGATGAGCTCCGAAAGAGAGCCCTGCTGGCCCGTGCGTTGGTTCGGACTACCATTGCTAGATATACAAACGATAGAGTTGATCCGAGGTCATTGAACTTTAAAAAGAACGGTTATGGGAAGCCTGAGGTAGACTGGCAAATTGCAGATCACTGGCAGCCACCTGCACTGCAATTCAACATCTCACACACTTCTTCCTTGATAGCTTGTGGAGTAGCTGTTGATTCACCAATCGGTATCGATGTGGAAGAGAAACAGCGAAAGTTGAAGCACCATATTCTAGCTTTTGCCAAACGATACTTCTCTACTCATGAAGTGGAACATTTAACTTCTATCTCAGACATTGAAGTTCAGCGGCAGCAGTTCCTTAAACTGTGGACTCTCAAGGTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 map00770
Pfam Domains
Protein Families
ACPS

Protein Analysis

207

Amino Acids

24.26

Weight (kDa)

9.66

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AASDHPPT_N PF22624 57 - 145 4.3e-08 4'-phosphopantetheinyl transferase, N-terminal
ACPS PF01648 153 - 205 1.7e-07 4'-phosphopantetheinyl transferase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 400
Acc36I ACCTGC 1 cut(s) 400
AccI GTMKAC 1 cut(s) 360
AccII CGCG 1 cut(s) 228
AciI CCGC 2 cut(s) 228, 583
AclWI GGATC 1 cut(s) 305
AdeI CACNNNGTG 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 7 cut(s) 84, 101, 172, 325, 406, 496, 575
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AluBI AGCT 5 cut(s) 187, 238, 434, 446, 512
AluI AGCT 5 cut(s) 187, 238, 434, 446, 512
Alw21I GWGCWC 1 cut(s) 240
AlwI GGATC 1 cut(s) 305
AoxI GGCC 2 cut(s) 49, 258
ApeKI GCWGC 3 cut(s) 217, 385, 586
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 3 cut(s) 163, 186, 447
AxyI CCTNAGG 2 cut(s) 144, 354
BanII GRGCYC 2 cut(s) 240, 253
BbsI GAAGAC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 3 cut(s) 204, 397, 598
BfaI CTAG 2 cut(s) 288, 509
BfuAI ACCTGC 1 cut(s) 400
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 5 cut(s) 218, 229, 386, 584, 587
BlsI GCNGC 5 cut(s) 219, 230, 387, 585, 588
BmgT120I GGNCC 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpuEI CTTGAG 1 cut(s) 596
Bsa29I ATCGAT 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 368, 386
Bse21I CCTNAGG 2 cut(s) 144, 354
Bse3DI GCAATG 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 3 cut(s) 135, 345, 579
BseNI ACTGG 2 cut(s) 368, 386
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 3 cut(s) 204, 397, 598
BsgI GTGCAG 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 2 cut(s) 51, 260
BshVI ATCGAT 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 268
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 2 cut(s) 51, 260
Bsp1286I GDGCHC 2 cut(s) 240, 253
Bsp143I GATC 2 cut(s) 310, 376
BspACI CCGC 2 cut(s) 228, 583
BspANI GGCC 2 cut(s) 51, 260
BspCNI CTCAG 3 cut(s) 136, 346, 578
BspDI ATCGAT 1 cut(s) 468
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 1 cut(s) 538
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 2 cut(s) 368, 386
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 2 cut(s) 310, 376
Bst4CI ACNGT 3 cut(s) 177, 341, 603
Bst6I CTCTTC 2 cut(s) 149, 471
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 144, 354, 565
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 2 cut(s) 313, 379
BstMBI GATC 2 cut(s) 310, 376
BstMWI GCNNNNNNNGC 4 cut(s) 57, 66, 223, 257
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 3 cut(s) 204, 397, 598
BstV2I GAAGAC 1 cut(s) 212
Bsu15I ATCGAT 1 cut(s) 468
Bsu36I CCTNAGG 2 cut(s) 144, 354
BsuRI GGCC 2 cut(s) 51, 260
BsuTUI ATCGAT 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 2 cut(s) 379, 395
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 258
CciI TCATGA 1 cut(s) 538
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 259
ClaI ATCGAT 1 cut(s) 468
CseI GACGC 1 cut(s) 24
CviAII CATG 2 cut(s) 47, 539
DdeI CTNAG 3 cut(s) 144, 354, 565
DpnI GATC 2 cut(s) 312, 378
DpnII GATC 2 cut(s) 310, 376
DraI TTTAAA 1 cut(s) 331
DraIII CACNNNGTG 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 149, 471
EarI CTCTTC 2 cut(s) 149, 471
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 2 cut(s) 240, 253
Eco53kI GAGCTC 1 cut(s) 238
Eco81I CCTNAGG 2 cut(s) 144, 354
EcoICRI GAGCTC 1 cut(s) 238
EcoT38I GRGCYC 2 cut(s) 240, 253
FaeI CATG 2 cut(s) 50, 542
FaiI YATR 7 cut(s) 38, 48, 135, 294, 345, 504, 540
FatI CATG 2 cut(s) 46, 538
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 5 cut(s) 218, 229, 386, 584, 587
FriOI GRGCYC 2 cut(s) 240, 253
Fsp4HI GCNGC 5 cut(s) 218, 229, 386, 584, 587
FspBI CTAG 2 cut(s) 288, 509
GlaI GCGC 1 cut(s) 227
GluI GCNGC 5 cut(s) 218, 229, 386, 584, 587
HaeIII GGCC 2 cut(s) 51, 260
HgaI GACGC 1 cut(s) 24
HhaI GCGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 50, 542
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 3 cut(s) 121, 452, 607
HphI GGTGA 3 cut(s) 163, 186, 447
Hpy166II GTNNAC 2 cut(s) 361, 606
Hpy188I TCNGA 6 cut(s) 14, 32, 242, 276, 315, 568
Hpy188III TCNNGA 1 cut(s) 539
Hpy8I GTNNAC 2 cut(s) 361, 606
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 3 cut(s) 177, 341, 603
HpyCH4V TGCA 3 cut(s) 374, 395, 400
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 66, 223, 257
HpyF3I CTNAG 3 cut(s) 144, 354, 565
Hsp92II CATG 2 cut(s) 50, 542
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 310, 376
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 8 cut(s) 108, 156, 242, 266, 349, 366, 367, 405
Lsp1109I GCAGC 3 cut(s) 204, 397, 598
MaeI CTAG 2 cut(s) 288, 509
MaeIII GTNAC 1 cut(s) 90
MalI GATC 2 cut(s) 312, 378
MboI GATC 2 cut(s) 310, 376
MboII GAAGA 5 cut(s) 72, 166, 217, 414, 488
MhlI GDGCHC 2 cut(s) 240, 253
MluCI AATT 3 cut(s) 33, 369, 401
MlyI GAGTC 2 cut(s) 130, 601
MnlI CCTC 5 cut(s) 62, 139, 142, 309, 349
MseI TTAA 3 cut(s) 330, 554, 597
MspA1I CMGCKG 1 cut(s) 583
Mva1269I GAATGC 1 cut(s) 228
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 4 cut(s) 57, 66, 223, 257
NdeII GATC 2 cut(s) 310, 376
NlaIII CATG 2 cut(s) 50, 542
PagI TCATGA 1 cut(s) 538
PaqCI CACCTGC 1 cut(s) 400
PctI GAATGC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 5 cut(s) 219, 230, 387, 585, 588
PleI GAGTC 2 cut(s) 129, 601
PpsI GAGTC 2 cut(s) 129, 601
Psp124BI GAGCTC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 259
SacI GAGCTC 1 cut(s) 240
SaqAI TTAA 3 cut(s) 330, 554, 597
SatI GCNGC 5 cut(s) 218, 229, 386, 584, 587
Sau3AI GATC 2 cut(s) 310, 376
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 2 cut(s) 130, 601
SduI GDGCHC 2 cut(s) 240, 253
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
Sse9I AATT 3 cut(s) 33, 369, 401
SsiI CCGC 2 cut(s) 228, 583
SspI AATATT 1 cut(s) 43
SspMI CTAG 2 cut(s) 288, 509
SstI GAGCTC 1 cut(s) 240
TaaI ACNGT 3 cut(s) 177, 341, 603
TaqI TCGA 2 cut(s) 112, 468
TasI AATT 3 cut(s) 33, 369, 401
TauI GCSGC 2 cut(s) 231, 586
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 3 cut(s) 330, 554, 597
Tru9I TTAA 3 cut(s) 330, 554, 597
TscAI CASTG 2 cut(s) 386, 402
TseI GCWGC 3 cut(s) 217, 385, 586
TspDTI ATGAA 3 cut(s) 35, 53, 555
TspRI CASTG 2 cut(s) 386, 402
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 2 cut(s) 288, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.